Wall clock time and date at job start Mon Mar 30 2020 21:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50699 * 109.47078 * 239.99821 * 2 1 3 5 5 H 1.08003 * 119.99962 * 240.00350 * 4 2 1 6 6 C 1.37874 * 120.00270 * 59.99958 * 4 2 1 7 7 N 1.31516 * 119.99500 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00390 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46950 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47111 * 120.00373 * 8 6 4 11 11 H 1.48500 * 109.47074 * 240.00166 * 8 6 4 12 12 N 1.46906 * 109.47302 * 120.00193 * 2 1 3 13 13 C 1.46904 * 110.99716 * 274.99847 * 12 2 1 14 14 H 1.09003 * 109.60347 * 35.00015 * 13 12 2 15 15 C 1.53346 * 109.60490 * 274.67418 * 13 12 2 16 16 C 1.53067 * 108.42495 * 172.71255 * 15 13 12 17 17 C 1.50175 * 109.89344 * 48.90159 * 16 15 13 18 18 O 1.21276 * 118.24826 * 162.38942 * 17 16 15 19 19 N 1.33361 * 123.50553 * 342.41461 * 17 16 15 20 20 C 1.45821 * 124.16505 * 2.04585 * 19 17 16 21 21 H 1.09007 * 109.45129 * 220.85669 * 20 19 17 22 22 C 1.52997 * 109.17852 * 101.46328 * 20 19 17 23 23 C 1.53004 * 117.50169 * 127.82381 * 22 20 19 24 24 C 1.53006 * 117.50104 * 59.16544 * 22 20 19 25 25 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 26 26 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 27 27 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 28 28 H 0.97002 * 119.99804 * 180.02562 * 7 6 4 29 29 H 1.00897 * 110.99997 * 151.04377 * 12 2 1 30 30 H 1.09001 * 109.66947 * 292.45066 * 15 13 12 31 31 H 1.09002 * 109.66914 * 52.93909 * 15 13 12 32 32 H 1.08997 * 109.39538 * 169.02659 * 16 15 13 33 33 H 1.08999 * 109.40082 * 288.85500 * 16 15 13 34 34 H 0.96995 * 117.94595 * 182.22316 * 19 17 16 35 35 H 1.08994 * 115.55038 * 273.49779 * 22 20 19 36 36 H 1.09002 * 117.49680 * 0.02562 * 23 22 20 37 37 H 1.08999 * 117.49997 * 145.02054 * 23 22 20 38 38 H 1.09000 * 117.50037 * 214.98279 * 24 22 20 39 39 H 1.09007 * 117.49701 * 359.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 3.1474 -2.2865 -3.6037 10 1 1.1678 -1.5867 -4.8165 11 1 3.1472 -0.1859 -4.8161 12 7 2.0197 -0.6926 1.1994 13 6 2.0825 0.2226 2.3469 14 1 1.2584 0.9340 2.2928 15 6 3.4167 0.9784 2.3298 16 6 3.3799 2.0495 3.4226 17 6 2.9125 1.4448 4.7153 18 8 3.1284 2.0505 5.7436 19 7 2.2730 0.2771 4.7931 20 6 1.9855 -0.5770 3.6467 21 1 0.9803 -0.9876 3.7430 22 6 2.9951 -1.7260 3.6102 23 6 2.4423 -3.1495 3.5142 24 6 3.0550 -2.6528 4.8261 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 0.7089 1.1613 -3.4844 29 1 2.9173 -1.1206 1.0287 30 1 4.2342 0.2841 2.5237 31 1 3.5587 1.4501 1.3574 32 1 4.3791 2.4638 3.5572 33 1 2.6950 2.8445 3.1276 34 1 1.9781 -0.0224 5.6672 35 1 3.9306 -1.5135 3.0929 36 1 1.3593 -3.2673 3.4767 37 1 3.0143 -3.8735 2.9341 38 1 4.0299 -3.0503 5.1085 39 1 2.3754 -2.4436 5.6523 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336756260.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:14:59 Heat of formation + Delta-G solvation = -20.398384 kcal Electronic energy + Delta-G solvation = -19421.496388 eV Core-core repulsion = 16557.164449 eV Total energy + Delta-G solvation = -2864.331939 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.41802 -37.92025 -36.18219 -34.50289 -32.91333 -31.68955 -29.32881 -26.72489 -25.21539 -24.17399 -22.49885 -22.04509 -21.33335 -19.85652 -18.27973 -17.17178 -16.46756 -16.01280 -15.43994 -15.16903 -14.94808 -14.38317 -13.87511 -13.77638 -13.59396 -12.97550 -12.49919 -12.36533 -11.94304 -11.64902 -11.43454 -11.29546 -11.25441 -10.99702 -10.71618 -10.63343 -10.41807 -10.20464 -10.12235 -10.06607 -9.90514 -9.53926 -8.94646 -8.89854 -8.54416 -7.37857 -6.09339 -4.15802 2.78578 3.24230 3.32512 3.33643 3.36572 4.04086 4.34118 4.67626 4.72025 4.84121 4.95584 5.11666 5.19331 5.23078 5.23412 5.48901 5.59539 5.63559 5.71595 5.77678 5.90527 6.00943 6.05545 6.19321 6.28897 6.33170 6.43252 6.79693 6.90352 7.06679 7.14151 7.39223 7.50236 7.71589 7.81408 8.19534 8.28599 8.35025 8.56449 8.94523 9.50774 10.96965 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.025362 B = 0.006075 C = 0.005395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.755354 B = 4607.749972 C = 5188.751563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.213 3.787 3 H 0.004 0.996 4 C -0.518 4.518 5 H 0.060 0.940 6 C 0.063 3.937 7 N -0.889 5.889 8 Si 0.895 3.105 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.285 1.285 12 N -0.671 5.671 13 C 0.085 3.915 14 H 0.081 0.919 15 C -0.155 4.155 16 C -0.132 4.132 17 C 0.523 3.477 18 O -0.572 6.572 19 N -0.709 5.709 20 C 0.178 3.822 21 H 0.089 0.911 22 C -0.153 4.153 23 C -0.153 4.153 24 C -0.188 4.188 25 H 0.080 0.920 26 H 0.003 0.997 27 H 0.032 0.968 28 H 0.261 0.739 29 H 0.335 0.665 30 H 0.068 0.932 31 H 0.083 0.917 32 H 0.095 0.905 33 H 0.098 0.902 34 H 0.394 0.606 35 H 0.103 0.897 36 H 0.096 0.904 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.875 -3.515 10.508 11.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.105 3.895 3 H 0.021 0.979 4 C -0.556 4.556 5 H 0.078 0.922 6 C -0.139 4.139 7 N -0.528 5.528 8 Si 0.723 3.277 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.211 1.211 12 N -0.302 5.302 13 C -0.027 4.027 14 H 0.099 0.901 15 C -0.195 4.195 16 C -0.172 4.172 17 C 0.311 3.689 18 O -0.453 6.453 19 N -0.359 5.359 20 C 0.073 3.927 21 H 0.107 0.893 22 C -0.172 4.172 23 C -0.191 4.191 24 C -0.225 4.225 25 H 0.099 0.901 26 H 0.022 0.978 27 H 0.051 0.949 28 H 0.071 0.929 29 H 0.153 0.847 30 H 0.087 0.913 31 H 0.101 0.899 32 H 0.114 0.886 33 H 0.117 0.883 34 H 0.229 0.771 35 H 0.121 0.879 36 H 0.115 0.885 37 H 0.112 0.888 38 H 0.107 0.893 39 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 2.341 -3.257 10.800 11.521 hybrid contribution 0.938 -0.081 -0.909 1.308 sum 3.278 -3.338 9.891 10.942 Atomic orbital electron populations 1.21741 0.97926 0.99392 0.99337 1.19121 0.92483 0.92497 0.85353 0.97859 1.21261 1.31475 1.12527 0.90359 0.92165 1.24905 0.95014 0.94959 0.99052 1.69901 1.36595 1.22851 1.23428 0.86491 0.78631 0.79618 0.82951 1.19768 1.20996 1.21128 1.60647 1.32395 1.31760 1.05383 1.21684 0.96280 0.93526 0.91240 0.90050 1.22501 0.99729 0.97966 0.99263 1.21588 1.03624 0.99626 0.92382 1.20251 0.76563 0.80619 0.91459 1.90715 1.57462 1.60721 1.36358 1.45583 1.58212 1.20758 1.11312 1.20600 0.97573 0.88993 0.85571 0.89350 1.22580 1.01183 0.91595 1.01856 1.22854 1.01058 0.96236 0.98929 1.22899 1.02418 1.05071 0.92125 0.90100 0.97811 0.94904 0.92944 0.84651 0.91312 0.89882 0.88649 0.88333 0.77124 0.87866 0.88534 0.88837 0.89304 0.89419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.92 9.18 37.16 0.34 -2.58 16 2 C 0.21 4.88 2.40 -68.86 -0.17 4.72 16 3 H 0.00 0.09 7.14 -51.93 -0.37 -0.28 16 4 C -0.52 -13.23 8.59 -34.44 -0.30 -13.53 16 5 H 0.06 1.52 7.62 -52.48 -0.40 1.12 16 6 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 7 N -0.89 -24.36 11.32 55.43 0.63 -23.73 16 8 Si 0.90 20.45 29.54 -169.99 -5.02 15.42 16 9 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.29 -6.52 7.11 56.52 0.40 -6.11 16 12 N -0.67 -12.28 5.58 -100.81 -0.56 -12.84 16 13 C 0.08 1.30 2.04 -67.58 -0.14 1.17 16 14 H 0.08 1.38 7.11 -51.93 -0.37 1.01 16 15 C -0.16 -2.21 5.24 -26.52 -0.14 -2.35 16 16 C -0.13 -1.78 6.03 -28.10 -0.17 -1.95 16 17 C 0.52 7.85 7.71 -11.87 -0.09 7.76 16 18 O -0.57 -10.50 17.78 5.56 0.10 -10.40 16 19 N -0.71 -9.12 4.88 -54.81 -0.27 -9.39 16 20 C 0.18 2.31 3.23 -68.34 -0.22 2.09 16 21 H 0.09 1.15 7.88 -51.92 -0.41 0.74 16 22 C -0.15 -1.85 4.15 -90.62 -0.38 -2.23 16 23 C -0.15 -1.75 10.18 -26.69 -0.27 -2.03 16 24 C -0.19 -1.97 10.10 -26.69 -0.27 -2.24 16 25 H 0.08 2.08 6.07 -51.93 -0.32 1.77 16 26 H 0.00 0.06 7.43 -51.93 -0.39 -0.32 16 27 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 29 H 0.34 6.08 7.38 -39.29 -0.29 5.79 16 30 H 0.07 0.92 6.43 -51.93 -0.33 0.59 16 31 H 0.08 1.32 7.42 -51.93 -0.39 0.93 16 32 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.10 1.29 8.14 -51.93 -0.42 0.86 16 34 H 0.39 4.59 8.80 -40.82 -0.36 4.23 16 35 H 0.10 1.32 6.47 -51.93 -0.34 0.98 16 36 H 0.10 1.12 8.04 -51.93 -0.42 0.70 16 37 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 38 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 309.53 15.07 4.66 4.66 Total: -1.00 -28.21 309.53 -8.39 -36.61 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: -6.04 Total: 9.27 kcal Atomic # 6 Polarization: -7.72 SS G_CDS: -1.89 Total: -9.61 kcal Atomic # 7 Polarization: -45.76 SS G_CDS: -0.20 Total: -45.96 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: 0.10 Total: -10.40 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -28.21 -8.39 -36.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336756260.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.208 kcal (2) G-P(sol) polarization free energy of solvation -28.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds