Wall clock time and date at job start Mon Mar 30 2020 21:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47473 * 2 1 4 4 C 1.53001 * 109.46939 * 239.99643 * 2 1 3 5 5 C 1.50711 * 109.46771 * 175.00068 * 4 2 1 6 6 H 1.07992 * 120.00039 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99594 * 179.97438 * 5 4 2 8 8 N 1.31516 * 119.99897 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 119.99852 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47040 * 90.00425 * 9 7 5 11 11 H 1.48494 * 109.47600 * 210.00452 * 9 7 5 12 12 H 1.48507 * 109.47164 * 330.00625 * 9 7 5 13 13 N 1.46908 * 109.46937 * 120.00272 * 2 1 3 14 14 C 1.46900 * 110.99727 * 274.20284 * 13 2 1 15 15 H 1.08999 * 110.85627 * 31.68723 * 14 13 2 16 16 C 1.54631 * 110.96998 * 155.47647 * 14 13 2 17 17 C 1.51279 * 104.19471 * 93.31830 * 16 14 13 18 18 O 1.21285 * 124.94248 * 196.23356 * 17 16 14 19 19 N 1.34426 * 110.11581 * 16.25727 * 17 16 14 20 20 C 1.46501 * 124.34863 * 180.14268 * 19 17 16 21 21 C 1.53000 * 117.49976 * 8.76463 * 20 19 17 22 22 C 1.53000 * 117.49423 * 300.10934 * 20 19 17 23 23 C 1.46763 * 111.29831 * 0.40398 * 19 17 16 24 24 H 1.09007 * 109.46905 * 304.85912 * 1 2 3 25 25 H 1.09002 * 109.46887 * 64.85605 * 1 2 3 26 26 H 1.09001 * 109.47601 * 184.85784 * 1 2 3 27 27 H 1.08991 * 109.47779 * 295.00091 * 4 2 1 28 28 H 1.08998 * 109.46741 * 55.01028 * 4 2 1 29 29 H 0.97005 * 119.99683 * 179.97438 * 8 7 5 30 30 H 1.00898 * 110.99795 * 38.15706 * 13 2 1 31 31 H 1.08997 * 110.48295 * 334.64527 * 16 14 13 32 32 H 1.08999 * 110.59887 * 212.05650 * 16 14 13 33 33 H 1.08993 * 115.54944 * 154.44196 * 20 19 17 34 34 H 1.09003 * 117.49932 * 0.02562 * 21 20 19 35 35 H 1.08996 * 117.49950 * 145.01942 * 21 20 19 36 36 H 1.09004 * 117.49752 * 214.98227 * 22 20 19 37 37 H 1.08999 * 117.50618 * 0.02562 * 22 20 19 38 38 H 1.08996 * 110.24489 * 101.98915 * 23 19 17 39 39 H 1.09001 * 110.24276 * 223.98549 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5419 -0.6150 -1.3127 6 1 4.0790 -0.0862 -0.5392 7 6 4.2304 -1.1937 -2.3577 8 7 3.5764 -1.8380 -3.2994 9 14 6.0920 -1.0613 -2.4368 10 1 6.7008 -2.2132 -1.7244 11 1 6.5291 -1.0699 -3.8559 12 1 6.5261 0.2045 -1.7928 13 7 2.0196 -0.6926 1.1995 14 6 2.1003 0.2270 2.3422 15 1 1.3274 0.9929 2.2793 16 6 2.0085 -0.5432 3.6799 17 6 3.4500 -0.8018 4.0588 18 8 3.8168 -1.6104 4.8851 19 7 4.2653 -0.0048 3.3467 20 6 5.7256 0.0004 3.4640 21 6 6.3706 -1.1016 4.3070 22 6 6.3232 0.3354 4.8321 23 6 3.5042 0.8639 2.4412 24 1 -0.3633 0.5874 0.8433 25 1 -0.3633 0.4367 -0.9303 26 1 -0.3634 -1.0240 0.0870 27 1 1.7516 -1.7715 -1.2056 28 1 1.6054 -0.2617 -2.1369 29 1 4.0608 -2.2449 -4.0348 30 1 1.4418 -1.4905 1.4175 31 1 1.4755 -1.4841 3.5425 32 1 1.5175 0.0649 4.4396 33 1 6.2669 0.3408 2.5814 34 1 5.7084 -1.8307 4.7740 35 1 7.3363 -1.4860 3.9790 36 1 7.2579 0.8959 4.8494 37 1 5.6299 0.5516 5.6450 38 1 3.4336 1.8701 2.8545 39 1 3.9762 0.8910 1.4591 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381362114.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:15:42 Heat of formation + Delta-G solvation = -4.253072 kcal Electronic energy + Delta-G solvation = -19248.728191 eV Core-core repulsion = 16385.096366 eV Total energy + Delta-G solvation = -2863.631826 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.46853 -37.35387 -36.43268 -35.05281 -32.60063 -30.99199 -28.32091 -27.34477 -26.71557 -23.18005 -22.75124 -22.28590 -20.88829 -19.90473 -18.85729 -16.86841 -16.45064 -16.05380 -15.28575 -14.87266 -14.47507 -14.26894 -14.17770 -13.64263 -13.22794 -12.88717 -12.67019 -12.63796 -12.21057 -11.83054 -11.75250 -11.51500 -11.39658 -11.24495 -10.91455 -10.86999 -10.62356 -10.43637 -10.31317 -10.10261 -9.35916 -9.25434 -9.02596 -8.29274 -8.27172 -7.72923 -5.90198 -3.87900 2.74116 3.10981 3.37326 3.43739 3.44656 3.99222 4.44354 4.50875 4.54285 4.61647 4.93045 5.04543 5.10132 5.19606 5.46033 5.53178 5.57231 5.65446 5.68698 5.71963 5.75588 5.80877 5.89560 5.97158 6.07061 6.10407 6.36815 6.37434 6.56301 6.88126 6.96038 7.34467 7.47458 7.63748 7.93776 7.97166 8.11443 8.39388 8.55986 9.16499 9.73378 11.21920 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.016640 B = 0.007902 C = 0.005802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.280474 B = 3542.524536 C = 4825.004140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.089 3.911 3 H 0.066 0.934 4 C 0.033 3.967 5 C -0.487 4.487 6 H 0.057 0.943 7 C 0.050 3.950 8 N -0.903 5.903 9 Si 0.888 3.112 10 H -0.283 1.283 11 H -0.290 1.290 12 H -0.276 1.276 13 N -0.654 5.654 14 C 0.075 3.925 15 H 0.069 0.931 16 C -0.157 4.157 17 C 0.526 3.474 18 O -0.542 6.542 19 N -0.577 5.577 20 C 0.087 3.913 21 C -0.190 4.190 22 C -0.195 4.195 23 C 0.111 3.889 24 H 0.037 0.963 25 H 0.058 0.942 26 H 0.051 0.949 27 H 0.017 0.983 28 H 0.018 0.982 29 H 0.257 0.743 30 H 0.337 0.663 31 H 0.103 0.897 32 H 0.102 0.898 33 H 0.129 0.871 34 H 0.131 0.869 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.091 0.909 38 H 0.066 0.934 39 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.909 6.639 12.902 14.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.020 4.020 3 H 0.084 0.916 4 C -0.004 4.004 5 C -0.526 4.526 6 H 0.075 0.925 7 C -0.149 4.149 8 N -0.544 5.544 9 Si 0.717 3.283 10 H -0.209 1.209 11 H -0.216 1.216 12 H -0.201 1.201 13 N -0.286 5.286 14 C -0.036 4.036 15 H 0.087 0.913 16 C -0.197 4.197 17 C 0.315 3.685 18 O -0.421 6.421 19 N -0.308 5.308 20 C -0.017 4.017 21 C -0.228 4.228 22 C -0.234 4.234 23 C -0.013 4.013 24 H 0.056 0.944 25 H 0.077 0.923 26 H 0.070 0.930 27 H 0.035 0.965 28 H 0.036 0.964 29 H 0.067 0.933 30 H 0.157 0.843 31 H 0.121 0.879 32 H 0.121 0.879 33 H 0.147 0.853 34 H 0.149 0.851 35 H 0.113 0.887 36 H 0.115 0.885 37 H 0.109 0.891 38 H 0.084 0.916 39 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -0.961 6.210 12.976 14.417 hybrid contribution 0.160 0.148 -0.063 0.227 sum -0.801 6.358 12.913 14.416 Atomic orbital electron populations 1.22567 0.99290 1.01072 1.00979 1.21870 0.90010 0.98121 0.92044 0.91566 1.19108 0.96246 0.95463 0.89617 1.21097 0.91809 1.32978 1.06677 0.92499 1.24995 0.97868 0.95936 0.96093 1.69958 1.35144 1.36899 1.12375 0.86667 0.86630 0.78252 0.76799 1.20914 1.21626 1.20147 1.60566 1.57737 1.08362 1.01968 1.22432 0.95709 0.95375 0.90092 0.91329 1.22571 0.95472 1.03226 0.98472 1.20745 0.88567 0.79457 0.79742 1.90565 1.80458 1.36116 1.34949 1.47467 1.04491 1.38515 1.40307 1.21491 0.79664 1.05369 0.95216 1.23717 1.02668 0.93347 1.03037 1.23343 1.02649 0.99488 0.97876 1.22326 0.92011 0.91863 0.95077 0.94358 0.92285 0.93012 0.96491 0.96388 0.93322 0.84339 0.87915 0.87947 0.85334 0.85141 0.88735 0.88515 0.89077 0.91608 0.88384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.70 9.17 37.16 0.34 -2.36 16 2 C 0.09 1.61 2.40 -67.71 -0.16 1.44 16 3 H 0.07 1.20 7.85 -51.93 -0.41 0.79 16 4 C 0.03 0.80 4.65 -27.88 -0.13 0.67 16 5 C -0.49 -13.15 8.84 -34.43 -0.30 -13.46 16 6 H 0.06 1.50 7.09 -52.49 -0.37 1.13 16 7 C 0.05 1.43 5.46 -17.82 -0.10 1.33 16 8 N -0.90 -27.01 13.29 55.43 0.74 -26.27 16 9 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 10 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 11 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 N -0.65 -10.94 5.83 -98.03 -0.57 -11.51 16 14 C 0.08 0.99 3.23 -66.08 -0.21 0.78 16 15 H 0.07 0.78 7.34 -51.93 -0.38 0.40 16 16 C -0.16 -1.95 6.54 -26.74 -0.17 -2.13 16 17 C 0.53 8.43 7.88 -10.86 -0.09 8.35 16 18 O -0.54 -10.15 14.69 5.55 0.08 -10.07 16 19 N -0.58 -8.79 3.27 -164.85 -0.54 -9.33 16 20 C 0.09 1.26 6.88 -67.93 -0.47 0.79 16 21 C -0.19 -2.75 9.77 -26.70 -0.26 -3.01 16 22 C -0.19 -2.45 10.34 -26.70 -0.28 -2.73 16 23 C 0.11 1.53 7.08 -3.12 -0.02 1.51 16 24 H 0.04 0.48 7.65 -51.92 -0.40 0.08 16 25 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.05 0.76 8.04 -51.93 -0.42 0.35 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 30 H 0.34 5.36 7.76 -39.29 -0.30 5.06 16 31 H 0.10 1.25 7.58 -51.93 -0.39 0.85 16 32 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.13 1.77 8.14 -51.93 -0.42 1.34 16 34 H 0.13 2.22 5.30 -51.93 -0.28 1.94 16 35 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.10 1.60 7.43 -51.93 -0.39 1.21 16 LS Contribution 317.81 15.07 4.79 4.79 Total: -1.00 -31.46 317.81 -8.65 -40.11 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -6.28 Total: 4.31 kcal Atomic # 6 Polarization: -6.96 SS G_CDS: -1.85 Total: -8.82 kcal Atomic # 7 Polarization: -46.74 SS G_CDS: -0.37 Total: -47.12 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.08 Total: -10.07 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -31.46 -8.65 -40.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381362114.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.861 kcal (2) G-P(sol) polarization free energy of solvation -31.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds