Wall clock time and date at job start Mon Mar 30 2020 21:15:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46938 * 2 1 4 4 N 1.46894 * 109.47178 * 239.99866 * 2 1 3 5 5 C 1.53002 * 109.47006 * 119.99842 * 2 1 3 6 6 C 1.50692 * 109.47130 * 185.60262 * 5 2 1 7 7 C 1.34848 * 125.89445 * 274.80471 * 6 5 2 8 8 C 1.40892 * 107.42282 * 179.97438 * 7 6 5 9 9 C 1.34849 * 107.41216 * 0.02562 * 8 7 6 10 10 N 1.36339 * 108.22383 * 359.73126 * 9 8 7 11 11 C 1.46497 * 125.64122 * 180.26658 * 10 9 8 12 12 C 1.52999 * 109.46986 * 261.85290 * 11 10 9 13 13 O 1.42908 * 109.47224 * 184.95864 * 12 11 10 14 14 C 1.42891 * 113.99938 * 179.97438 * 13 12 11 15 15 C 1.50705 * 109.47063 * 179.97438 * 14 13 12 16 16 H 1.08000 * 119.99724 * 0.02562 * 15 14 13 17 17 C 1.37880 * 120.00245 * 179.97438 * 15 14 13 18 18 N 1.31507 * 119.99740 * 180.02562 * 17 15 14 19 19 Si 1.86795 * 119.99970 * 0.02562 * 17 15 14 20 20 H 1.48497 * 109.47415 * 89.99719 * 19 17 15 21 21 H 1.48500 * 109.47269 * 209.99935 * 19 17 15 22 22 H 1.48500 * 109.47058 * 329.99778 * 19 17 15 23 23 H 1.08997 * 109.47515 * 299.99823 * 1 2 3 24 24 H 1.09001 * 109.46870 * 60.00468 * 1 2 3 25 25 H 1.09000 * 109.46938 * 179.97438 * 1 2 3 26 26 H 1.00894 * 111.00355 * 305.12484 * 4 2 1 27 27 H 1.00902 * 111.00286 * 69.08286 * 4 2 1 28 28 H 1.08997 * 109.46865 * 305.60522 * 5 2 1 29 29 H 1.09004 * 109.46880 * 65.60194 * 5 2 1 30 30 H 1.08008 * 126.28971 * 359.97438 * 7 6 5 31 31 H 1.07994 * 126.29247 * 179.97438 * 8 7 6 32 32 H 1.08001 * 125.88508 * 180.02562 * 9 8 7 33 33 H 1.08998 * 109.46803 * 21.84924 * 11 10 9 34 34 H 1.08997 * 109.47585 * 141.84942 * 11 10 9 35 35 H 1.09001 * 109.47145 * 304.95485 * 12 11 10 36 36 H 1.08998 * 109.47313 * 64.95375 * 12 11 10 37 37 H 1.09000 * 109.47643 * 299.99398 * 14 13 12 38 38 H 1.08999 * 109.47620 * 59.99857 * 14 13 12 39 39 H 0.97006 * 119.99847 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0400 -0.7212 1.2493 6 6 3.5405 -0.6023 1.3206 7 6 4.4278 -1.4121 0.7080 8 6 5.7176 -0.9498 1.0364 9 6 5.5693 0.1246 1.8377 10 7 4.2352 0.3462 2.0112 11 6 3.6456 1.4232 2.8103 12 6 3.2618 0.8835 4.1895 13 8 2.5827 1.9016 4.9274 14 6 2.1780 1.4981 6.2371 15 6 1.4763 2.6431 6.9211 16 1 1.3516 3.5846 6.4068 17 6 0.9927 2.4885 8.2030 18 7 0.3800 3.4875 8.7995 19 14 1.2078 0.8599 9.0922 20 1 2.4889 0.8713 9.8431 21 1 0.0811 0.6601 10.0387 22 1 1.2244 -0.2464 8.1018 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6293 -1.6205 -1.2659 27 1 1.8232 -0.1570 -2.0317 28 1 1.5970 -0.2686 2.1364 29 1 1.7608 -1.7738 1.2005 30 1 4.1930 -2.2594 0.0808 31 1 6.6530 -1.3777 0.7076 32 1 6.3693 0.7115 2.2643 33 1 4.3703 2.2294 2.9244 34 1 2.7558 1.8030 2.3082 35 1 2.6058 0.0209 4.0724 36 1 4.1622 0.5849 4.7263 37 1 1.4993 0.6485 6.1622 38 1 3.0557 1.2121 6.8167 39 1 0.0394 3.3786 9.7013 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385251195.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:15:55 Heat of formation + Delta-G solvation = -8.160575 kcal Electronic energy + Delta-G solvation = -18423.410244 eV Core-core repulsion = 15559.608977 eV Total energy + Delta-G solvation = -2863.801268 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.10806 -37.16497 -36.71212 -33.38602 -32.51717 -30.72532 -28.89495 -28.78847 -27.11114 -25.69844 -22.81590 -21.95582 -21.05370 -20.39394 -18.86706 -17.00160 -16.92287 -16.22057 -15.53635 -15.38562 -15.01372 -14.70173 -14.19064 -13.78504 -13.42425 -13.30592 -13.02991 -12.81421 -12.54527 -12.44600 -12.37467 -11.99315 -11.68959 -11.32707 -11.30949 -11.11576 -11.05726 -10.82059 -10.74501 -9.95443 -9.30437 -9.00787 -8.81948 -8.60026 -8.36968 -7.74036 -6.19588 -4.19785 2.44830 3.03884 3.19447 3.26947 3.27789 3.28859 4.28457 4.36998 4.58586 4.70686 4.85110 4.91889 5.09680 5.11701 5.24915 5.31772 5.41577 5.44158 5.48890 5.61456 5.67763 5.71086 5.83033 5.90108 5.95980 6.02222 6.02973 6.47844 6.53221 6.58006 6.87401 7.00955 7.28387 7.30224 7.48234 7.50297 7.60143 7.84427 8.53216 8.90182 9.38783 10.93191 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.023679 B = 0.004621 C = 0.004194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.222196 B = 6057.458430 C = 6675.152520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.094 3.906 3 H 0.077 0.923 4 N -0.835 5.835 5 C -0.047 4.047 6 C 0.031 3.969 7 C -0.176 4.176 8 C -0.208 4.208 9 C -0.018 4.018 10 N -0.440 5.440 11 C 0.107 3.893 12 C 0.047 3.953 13 O -0.379 6.379 14 C 0.172 3.828 15 C -0.523 4.523 16 H 0.083 0.917 17 C 0.075 3.925 18 N -0.893 5.893 19 Si 0.875 3.125 20 H -0.273 1.273 21 H -0.281 1.281 22 H -0.266 1.266 23 H 0.065 0.935 24 H 0.054 0.946 25 H 0.056 0.944 26 H 0.337 0.663 27 H 0.338 0.662 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.129 0.871 31 H 0.129 0.871 32 H 0.156 0.844 33 H 0.096 0.904 34 H 0.092 0.908 35 H 0.044 0.956 36 H 0.045 0.955 37 H 0.005 0.995 38 H 0.000 1.000 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.665 -9.790 -17.727 20.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.018 4.018 3 H 0.096 0.904 4 N -0.363 5.363 5 C -0.085 4.085 6 C -0.080 4.080 7 C -0.200 4.200 8 C -0.232 4.232 9 C -0.147 4.147 10 N -0.117 5.117 11 C -0.015 4.015 12 C -0.032 4.032 13 O -0.298 6.298 14 C 0.097 3.903 15 C -0.561 4.561 16 H 0.101 0.899 17 C -0.128 4.128 18 N -0.531 5.531 19 Si 0.701 3.299 20 H -0.198 1.198 21 H -0.206 1.206 22 H -0.191 1.191 23 H 0.084 0.916 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.149 0.851 27 H 0.150 0.850 28 H 0.093 0.907 29 H 0.098 0.902 30 H 0.147 0.853 31 H 0.147 0.853 32 H 0.174 0.826 33 H 0.114 0.886 34 H 0.111 0.889 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.022 0.978 38 H 0.018 0.982 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.101 -9.174 -17.066 20.036 hybrid contribution -0.850 -1.032 0.493 1.425 sum 4.251 -10.205 -16.574 19.923 Atomic orbital electron populations 1.22662 0.97478 1.02106 1.02627 1.21361 0.91642 0.98251 0.90595 0.90442 1.58809 1.66687 1.06427 1.04421 1.20184 0.89260 1.01580 0.97492 1.20027 0.93595 0.93452 1.00932 1.20464 0.91756 1.02550 1.05279 1.20802 0.97718 0.99731 1.04994 1.21739 0.84706 1.02182 1.06120 1.43971 1.05949 1.23736 1.38067 1.21592 1.00391 0.88455 0.91074 1.22577 0.96691 0.92136 0.91766 1.87850 1.75746 1.36559 1.29634 1.20640 0.93639 0.96964 0.79095 1.20854 1.36566 0.99325 0.99346 0.89874 1.24746 0.94537 0.96734 0.96757 1.69866 1.37978 1.31152 1.14084 0.86864 0.78456 0.84374 0.80163 1.19802 1.20614 1.19121 0.91565 0.92703 0.92539 0.85098 0.85018 0.90679 0.90171 0.85312 0.85344 0.82646 0.88552 0.88947 0.93756 0.93674 0.97766 0.98188 0.92230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.65 9.44 37.16 0.35 -1.30 16 2 C 0.09 0.93 3.34 -67.71 -0.23 0.70 16 3 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 4 N -0.83 -7.28 8.72 -4.67 -0.04 -7.32 16 5 C -0.05 -0.54 5.06 -27.89 -0.14 -0.68 16 6 C 0.03 0.42 5.95 -81.79 -0.49 -0.07 16 7 C -0.18 -2.37 10.47 -39.78 -0.42 -2.79 16 8 C -0.21 -2.75 10.86 -39.78 -0.43 -3.18 16 9 C -0.02 -0.24 11.42 -16.75 -0.19 -0.43 16 10 N -0.44 -6.16 2.75 -112.55 -0.31 -6.47 16 11 C 0.11 1.54 5.91 -4.04 -0.02 1.51 16 12 C 0.05 0.82 6.24 37.16 0.23 1.05 16 13 O -0.38 -8.55 10.33 -35.23 -0.36 -8.91 16 14 C 0.17 4.30 4.76 36.01 0.17 4.48 16 15 C -0.52 -15.33 9.99 -34.44 -0.34 -15.67 16 16 H 0.08 2.65 8.06 -52.49 -0.42 2.23 16 17 C 0.07 2.17 5.47 -17.82 -0.10 2.07 16 18 N -0.89 -27.19 13.96 55.43 0.77 -26.42 16 19 Si 0.88 21.16 27.47 -169.99 -4.67 16.49 16 20 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.27 -6.20 6.54 56.52 0.37 -5.83 16 23 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.34 2.48 8.97 -39.29 -0.35 2.13 16 27 H 0.34 2.50 9.08 -39.29 -0.36 2.14 16 28 H 0.07 0.94 6.93 -51.93 -0.36 0.58 16 29 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.13 1.58 8.06 -52.48 -0.42 1.16 16 31 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 32 H 0.16 1.73 8.06 -52.49 -0.42 1.31 16 33 H 0.10 1.29 8.11 -51.93 -0.42 0.87 16 34 H 0.09 1.29 7.96 -51.93 -0.41 0.87 16 35 H 0.04 0.76 7.40 -51.93 -0.38 0.38 16 36 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.00 0.11 7.20 -51.93 -0.37 -0.26 16 38 H 0.00 0.01 7.57 -51.93 -0.39 -0.38 16 39 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 325.49 15.07 4.91 4.91 Total: -1.00 -31.64 325.49 -7.76 -39.39 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -6.45 Total: 2.64 kcal Atomic # 6 Polarization: -12.71 SS G_CDS: -1.60 Total: -14.31 kcal Atomic # 7 Polarization: -40.63 SS G_CDS: 0.42 Total: -40.20 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: -0.36 Total: -8.91 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.67 Total: 16.49 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.64 -7.76 -39.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385251195.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.234 kcal (2) G-P(sol) polarization free energy of solvation -31.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds