Wall clock time and date at job start Mon Mar 30 2020 21:16:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46897 * 109.47183 * 2 1 4 4 C 1.46903 * 111.00181 * 160.46969 * 3 2 1 5 5 C 1.53000 * 109.46924 * 288.01290 * 4 3 2 6 6 C 1.46901 * 110.99986 * 284.42099 * 3 2 1 7 7 H 1.08995 * 115.51393 * 325.41669 * 6 3 2 8 8 C 1.53000 * 117.44358 * 180.02562 * 6 3 2 9 9 H 1.09000 * 119.53765 * 5.75642 * 8 6 3 10 10 C 1.54382 * 118.12183 * 160.85627 * 8 6 3 11 11 N 1.48145 * 104.61969 * 89.20637 * 10 8 6 12 12 C 1.34775 * 127.83997 * 140.43266 * 11 10 8 13 13 O 1.21694 * 120.00035 * 359.97438 * 12 11 10 14 14 C 1.46376 * 120.00532 * 180.02562 * 12 11 10 15 15 H 1.07999 * 119.99225 * 6.86189 * 14 12 11 16 16 C 1.40044 * 120.00246 * 186.86552 * 14 12 11 17 17 N 1.30676 * 120.00080 * 6.93207 * 16 14 12 18 18 Si 1.86799 * 119.99749 * 186.93524 * 16 14 12 19 19 H 1.48498 * 109.47306 * 94.98272 * 18 16 14 20 20 H 1.48499 * 109.47156 * 214.98535 * 18 16 14 21 21 H 1.48501 * 109.47236 * 334.98214 * 18 16 14 22 22 C 1.48137 * 104.32473 * 320.41412 * 11 10 8 23 23 C 1.54289 * 61.49866 * 253.31454 * 8 6 3 24 24 H 1.08994 * 121.82255 * 107.96919 * 23 8 6 25 25 H 1.09001 * 109.46981 * 65.40056 * 1 2 3 26 26 H 1.09001 * 109.47189 * 185.40171 * 1 2 3 27 27 H 1.09004 * 109.47453 * 305.40410 * 1 2 3 28 28 H 1.08997 * 109.47133 * 239.99346 * 2 1 3 29 29 H 1.09005 * 109.46663 * 119.99882 * 2 1 3 30 30 H 1.09002 * 109.47022 * 48.01043 * 4 3 2 31 31 H 1.08998 * 109.47639 * 168.01225 * 4 3 2 32 32 H 1.09003 * 109.46936 * 179.79019 * 5 4 3 33 33 H 1.08993 * 109.47226 * 299.78975 * 5 4 3 34 34 H 1.08997 * 109.47589 * 59.79569 * 5 4 3 35 35 H 1.09006 * 110.40471 * 207.99226 * 10 8 6 36 36 H 1.08997 * 110.40752 * 330.41706 * 10 8 6 37 37 H 0.97003 * 119.99540 * 180.02562 * 17 16 14 38 38 H 1.09002 * 110.40608 * 280.80382 * 22 11 10 39 39 H 1.09000 * 110.41188 * 158.36920 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4137 1.4505 0.4585 5 6 3.4685 1.1833 1.9640 6 6 1.8731 1.9951 -1.3282 7 1 2.0159 1.3212 -2.1728 8 6 2.3401 3.4426 -1.4947 9 1 2.8466 3.9421 -0.6688 10 6 2.6214 3.9568 -2.9229 11 7 1.3211 4.4903 -3.3911 12 6 1.0974 5.6027 -4.1184 13 8 2.0319 6.3003 -4.4664 14 6 -0.2696 5.9725 -4.4889 15 1 -1.1059 5.4189 -4.0885 16 6 -0.4928 7.0440 -5.3625 17 7 0.5168 7.6270 -5.9528 18 14 -2.2338 7.6399 -5.6839 19 1 -2.5436 8.7750 -4.7780 20 1 -2.3515 8.0865 -7.0952 21 1 -3.1903 6.5318 -5.4340 22 6 0.3224 3.5235 -2.8789 23 6 0.8242 3.1568 -1.4656 24 1 0.2041 3.4306 -0.6121 25 1 -0.3633 0.4278 -0.9344 26 1 -0.3633 -1.0231 0.0967 27 1 -0.3634 0.5954 0.8376 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5138 0.8901 30 1 4.0043 0.6990 -0.0657 31 1 3.8186 2.4408 0.2503 32 1 4.5034 1.2282 2.3035 33 1 2.8811 1.9368 2.4884 34 1 3.0604 0.1943 2.1726 35 1 3.3712 4.7477 -2.9013 36 1 2.9494 3.1384 -3.5638 37 1 0.3621 8.3695 -6.5576 38 1 0.2914 2.6373 -3.5129 39 1 -0.6624 3.9873 -2.8241 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395269377.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:16:39 Heat of formation + Delta-G solvation = 4.167411 kcal Electronic energy + Delta-G solvation = -18817.546800 eV Core-core repulsion = 15954.280114 eV Total energy + Delta-G solvation = -2863.266686 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.57443 -37.39102 -35.80801 -32.57580 -31.91144 -31.86392 -28.61435 -27.99165 -26.26759 -24.16243 -23.07220 -21.64058 -20.13623 -19.59774 -19.02887 -16.73400 -16.22713 -15.54159 -15.36964 -14.82952 -14.35576 -14.05825 -13.79595 -13.74494 -13.00851 -12.78904 -12.40241 -12.24237 -11.99283 -11.80573 -11.66726 -11.50994 -11.30639 -11.23470 -11.10876 -10.94156 -10.90807 -10.63445 -10.38973 -10.15862 -9.62905 -9.56193 -8.86035 -8.29153 -7.64434 -7.29756 -6.24283 -4.64721 3.13960 3.21015 3.24433 3.56669 3.82642 4.08536 4.53434 4.58511 4.83972 5.00053 5.06916 5.10664 5.17385 5.26329 5.34727 5.42263 5.49431 5.56900 5.60736 5.67661 5.77414 5.79907 5.88445 5.96931 6.03274 6.11954 6.15298 6.25380 6.39253 6.45092 6.59644 6.67593 7.03046 7.17099 7.25029 7.43576 8.09255 8.41162 9.00806 9.50036 10.55515 10.73843 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.036495 B = 0.004699 C = 0.004323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.049430 B = 5956.898092 C = 6475.681772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.054 3.946 3 N -0.512 5.512 4 C 0.049 3.951 5 C -0.147 4.147 6 C 0.035 3.965 7 H 0.089 0.911 8 C -0.163 4.163 9 H 0.111 0.889 10 C 0.137 3.863 11 N -0.643 5.643 12 C 0.579 3.421 13 O -0.578 6.578 14 C -0.540 4.540 15 H 0.071 0.929 16 C 0.088 3.912 17 N -0.770 5.770 18 Si 0.909 3.091 19 H -0.272 1.272 20 H -0.279 1.279 21 H -0.264 1.264 22 C 0.143 3.857 23 C -0.149 4.149 24 H 0.117 0.883 25 H 0.059 0.941 26 H 0.053 0.947 27 H 0.061 0.939 28 H 0.034 0.966 29 H 0.071 0.929 30 H 0.032 0.968 31 H 0.078 0.922 32 H 0.056 0.944 33 H 0.062 0.938 34 H 0.052 0.948 35 H 0.075 0.925 36 H 0.048 0.952 37 H 0.269 0.731 38 H 0.049 0.951 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.833 -14.175 11.756 18.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.074 4.074 3 N -0.236 5.236 4 C -0.078 4.078 5 C -0.204 4.204 6 C -0.075 4.075 7 H 0.106 0.894 8 C -0.183 4.183 9 H 0.129 0.871 10 C 0.012 3.988 11 N -0.382 5.382 12 C 0.386 3.614 13 O -0.461 6.461 14 C -0.576 4.576 15 H 0.089 0.911 16 C -0.131 4.131 17 N -0.399 5.399 18 Si 0.734 3.266 19 H -0.197 1.197 20 H -0.204 1.204 21 H -0.188 1.188 22 C 0.018 3.982 23 C -0.169 4.169 24 H 0.135 0.865 25 H 0.078 0.922 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.052 0.948 29 H 0.090 0.910 30 H 0.050 0.950 31 H 0.097 0.903 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.094 0.906 36 H 0.066 0.934 37 H 0.080 0.920 38 H 0.067 0.933 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.122 -13.237 11.662 17.677 hybrid contribution -0.338 -0.249 -0.561 0.701 sum 0.785 -13.487 11.100 17.485 Atomic orbital electron populations 1.21730 0.94666 1.00935 1.02966 1.22111 0.96540 0.88340 1.00422 1.61687 1.19902 1.17884 1.24106 1.22081 0.88408 1.01722 0.95613 1.21799 1.01268 1.01840 0.95519 1.23229 1.04210 0.89995 0.90020 0.89371 1.23875 0.98996 0.95961 0.99453 0.87128 1.21371 0.89923 0.97386 0.90102 1.49507 1.04147 1.26389 1.58176 1.18026 0.90585 0.76773 0.76029 1.90606 1.45860 1.51851 1.57756 1.20865 0.90799 1.16361 1.29620 0.91098 1.25715 0.98134 0.95279 0.94005 1.69995 1.31516 1.17706 1.20658 0.86334 0.82789 0.79553 0.77967 1.19710 1.20429 1.18804 1.21453 0.94335 0.92357 0.90055 1.24595 0.92031 1.00985 0.99314 0.86507 0.92201 0.92843 0.91986 0.94817 0.91030 0.94964 0.90342 0.92472 0.91918 0.92913 0.90645 0.93433 0.91982 0.93255 0.89967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.97 37.16 0.37 -1.06 16 2 C 0.05 0.54 5.54 -3.83 -0.02 0.52 16 3 N -0.51 -6.09 4.54 -223.99 -1.02 -7.11 16 4 C 0.05 0.52 5.62 -3.82 -0.02 0.50 16 5 C -0.15 -1.31 9.98 37.16 0.37 -0.94 16 6 C 0.03 0.47 4.52 -65.48 -0.30 0.18 16 7 H 0.09 1.22 7.89 -51.93 -0.41 0.81 16 8 C -0.16 -2.61 6.07 -89.22 -0.54 -3.15 16 9 H 0.11 1.71 7.21 -51.93 -0.37 1.34 16 10 C 0.14 2.71 6.85 -2.41 -0.02 2.69 16 11 N -0.64 -15.18 3.32 -170.97 -0.57 -15.75 16 12 C 0.58 16.99 7.81 -12.99 -0.10 16.88 16 13 O -0.58 -19.25 15.38 5.19 0.08 -19.17 16 14 C -0.54 -15.44 9.08 -35.63 -0.32 -15.76 16 15 H 0.07 1.86 6.48 -52.49 -0.34 1.52 16 16 C 0.09 2.48 5.48 -17.37 -0.10 2.39 16 17 N -0.77 -23.26 11.91 55.55 0.66 -22.60 16 18 Si 0.91 20.23 29.56 -169.99 -5.03 15.21 16 19 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 20 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 21 H -0.26 -5.64 7.11 56.52 0.40 -5.24 16 22 C 0.14 2.69 6.72 -2.41 -0.02 2.67 16 23 C -0.15 -2.36 7.24 -86.98 -0.63 -2.99 16 24 H 0.12 1.81 8.14 -51.93 -0.42 1.39 16 25 H 0.06 0.65 7.86 -51.93 -0.41 0.24 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.03 0.34 7.83 -51.93 -0.41 -0.06 16 29 H 0.07 0.64 6.25 -51.93 -0.32 0.32 16 30 H 0.03 0.33 8.05 -51.93 -0.42 -0.09 16 31 H 0.08 0.89 6.39 -51.93 -0.33 0.56 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.05 0.44 6.53 -51.93 -0.34 0.10 16 35 H 0.08 1.61 7.88 -51.93 -0.41 1.20 16 36 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.27 7.35 8.29 -40.82 -0.34 7.01 16 38 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.08 1.58 6.65 -51.93 -0.35 1.23 16 LS Contribution 315.22 15.07 4.75 4.75 Total: -1.00 -33.60 315.22 -8.64 -42.24 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -6.20 Total: 0.48 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: -1.32 Total: 1.95 kcal Atomic # 7 Polarization: -44.53 SS G_CDS: -0.92 Total: -45.45 kcal Atomic # 8 Polarization: -19.25 SS G_CDS: 0.08 Total: -19.17 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.03 Total: 15.21 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -33.60 -8.64 -42.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395269377.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.404 kcal (2) G-P(sol) polarization free energy of solvation -33.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds