Wall clock time and date at job start Mon Mar 30 2020 21:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46897 * 109.47183 * 2 1 4 4 C 1.46903 * 111.00181 * 160.46969 * 3 2 1 5 5 C 1.53000 * 109.46924 * 288.01290 * 4 3 2 6 6 C 1.46901 * 110.99986 * 284.42099 * 3 2 1 7 7 H 1.08995 * 115.51393 * 325.41669 * 6 3 2 8 8 C 1.53000 * 117.44358 * 180.02562 * 6 3 2 9 9 H 1.09000 * 119.53765 * 5.75642 * 8 6 3 10 10 C 1.54382 * 118.12183 * 160.85627 * 8 6 3 11 11 N 1.48145 * 104.61969 * 89.20637 * 10 8 6 12 12 C 1.34775 * 127.83997 * 140.43266 * 11 10 8 13 13 O 1.21694 * 120.00035 * 359.97438 * 12 11 10 14 14 C 1.46376 * 120.00532 * 180.02562 * 12 11 10 15 15 H 1.07999 * 119.99225 * 6.86189 * 14 12 11 16 16 C 1.40044 * 120.00246 * 186.86552 * 14 12 11 17 17 N 1.30676 * 120.00080 * 6.93207 * 16 14 12 18 18 Si 1.86799 * 119.99749 * 186.93524 * 16 14 12 19 19 H 1.48498 * 109.47306 * 94.98272 * 18 16 14 20 20 H 1.48499 * 109.47156 * 214.98535 * 18 16 14 21 21 H 1.48501 * 109.47236 * 334.98214 * 18 16 14 22 22 C 1.48137 * 104.32473 * 320.41412 * 11 10 8 23 23 C 1.54289 * 61.49866 * 253.31454 * 8 6 3 24 24 H 1.08994 * 121.82255 * 107.96919 * 23 8 6 25 25 H 1.09001 * 109.46981 * 65.40056 * 1 2 3 26 26 H 1.09001 * 109.47189 * 185.40171 * 1 2 3 27 27 H 1.09004 * 109.47453 * 305.40410 * 1 2 3 28 28 H 1.08997 * 109.47133 * 239.99346 * 2 1 3 29 29 H 1.09005 * 109.46663 * 119.99882 * 2 1 3 30 30 H 1.09002 * 109.47022 * 48.01043 * 4 3 2 31 31 H 1.08998 * 109.47639 * 168.01225 * 4 3 2 32 32 H 1.09003 * 109.46936 * 179.79019 * 5 4 3 33 33 H 1.08993 * 109.47226 * 299.78975 * 5 4 3 34 34 H 1.08997 * 109.47589 * 59.79569 * 5 4 3 35 35 H 1.09006 * 110.40471 * 207.99226 * 10 8 6 36 36 H 1.08997 * 110.40752 * 330.41706 * 10 8 6 37 37 H 0.97003 * 119.99540 * 180.02562 * 17 16 14 38 38 H 1.09002 * 110.40608 * 280.80382 * 22 11 10 39 39 H 1.09000 * 110.41188 * 158.36920 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4137 1.4505 0.4585 5 6 3.4685 1.1833 1.9640 6 6 1.8731 1.9951 -1.3282 7 1 2.0159 1.3212 -2.1728 8 6 2.3401 3.4426 -1.4947 9 1 2.8466 3.9421 -0.6688 10 6 2.6214 3.9568 -2.9229 11 7 1.3211 4.4903 -3.3911 12 6 1.0974 5.6027 -4.1184 13 8 2.0319 6.3003 -4.4664 14 6 -0.2696 5.9725 -4.4889 15 1 -1.1059 5.4189 -4.0885 16 6 -0.4928 7.0440 -5.3625 17 7 0.5168 7.6270 -5.9528 18 14 -2.2338 7.6399 -5.6839 19 1 -2.5436 8.7750 -4.7780 20 1 -2.3515 8.0865 -7.0952 21 1 -3.1903 6.5318 -5.4340 22 6 0.3224 3.5235 -2.8789 23 6 0.8242 3.1568 -1.4656 24 1 0.2041 3.4306 -0.6121 25 1 -0.3633 0.4278 -0.9344 26 1 -0.3633 -1.0231 0.0967 27 1 -0.3634 0.5954 0.8376 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5138 0.8901 30 1 4.0043 0.6990 -0.0657 31 1 3.8186 2.4408 0.2503 32 1 4.5034 1.2282 2.3035 33 1 2.8811 1.9368 2.4884 34 1 3.0604 0.1943 2.1726 35 1 3.3712 4.7477 -2.9013 36 1 2.9494 3.1384 -3.5638 37 1 0.3621 8.3695 -6.5576 38 1 0.2914 2.6373 -3.5129 39 1 -0.6624 3.9873 -2.8241 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395269377.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:16:38 Heat of formation + Delta-G solvation = -18.851110 kcal Electronic energy + Delta-G solvation = -18818.544958 eV Core-core repulsion = 15954.280114 eV Total energy + Delta-G solvation = -2864.264844 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.98992 -38.94514 -37.47228 -34.70368 -33.56918 -32.65024 -29.85181 -29.43968 -28.21346 -25.79986 -23.87948 -22.81125 -21.33960 -21.20203 -20.62420 -18.58286 -17.84685 -17.17040 -16.48998 -16.11460 -15.91110 -15.57254 -15.20899 -14.85171 -14.33293 -14.25426 -13.83480 -13.46142 -13.45862 -13.04945 -13.00998 -12.97042 -12.76049 -12.57331 -12.36472 -12.30424 -12.24938 -12.04864 -11.99317 -11.50669 -10.96227 -10.91344 -10.84509 -9.89747 -9.25841 -9.24603 -8.35800 -6.87501 1.39040 1.40773 1.56880 2.21731 2.37328 2.45352 2.64573 2.87691 3.53159 3.70416 3.92019 3.92928 4.05705 4.18597 4.26048 4.30063 4.37811 4.55344 4.62301 4.66828 4.74589 4.75507 4.75754 4.88541 4.93175 5.07332 5.12888 5.16234 5.20929 5.26946 5.32917 5.39709 5.48440 5.49470 5.98590 6.13484 6.20165 6.36647 6.83713 7.44983 8.40030 8.62607 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.036495 B = 0.004699 C = 0.004323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.049430 B = 5956.898092 C = 6475.681772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.051 3.949 3 N -0.519 5.519 4 C 0.046 3.954 5 C -0.141 4.141 6 C 0.072 3.928 7 H 0.095 0.905 8 C -0.164 4.164 9 H 0.117 0.883 10 C 0.134 3.866 11 N -0.655 5.655 12 C 0.559 3.441 13 O -0.636 6.636 14 C -0.566 4.566 15 H 0.089 0.911 16 C 0.030 3.970 17 N -0.824 5.824 18 Si 1.000 3.000 19 H -0.264 1.264 20 H -0.270 1.270 21 H -0.245 1.245 22 C 0.141 3.859 23 C -0.148 4.148 24 H 0.125 0.875 25 H 0.046 0.954 26 H 0.071 0.929 27 H 0.055 0.945 28 H 0.037 0.963 29 H 0.089 0.911 30 H 0.040 0.960 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.053 0.947 34 H 0.062 0.938 35 H 0.048 0.952 36 H 0.060 0.940 37 H 0.276 0.724 38 H 0.065 0.935 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.758 -16.164 13.140 20.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.076 4.076 3 N -0.243 5.243 4 C -0.081 4.081 5 C -0.198 4.198 6 C -0.038 4.038 7 H 0.112 0.888 8 C -0.184 4.184 9 H 0.135 0.865 10 C 0.010 3.990 11 N -0.392 5.392 12 C 0.367 3.633 13 O -0.523 6.523 14 C -0.602 4.602 15 H 0.107 0.893 16 C -0.185 4.185 17 N -0.454 5.454 18 Si 0.819 3.181 19 H -0.189 1.189 20 H -0.194 1.194 21 H -0.168 1.168 22 C 0.018 3.982 23 C -0.169 4.169 24 H 0.143 0.857 25 H 0.065 0.935 26 H 0.090 0.910 27 H 0.074 0.926 28 H 0.056 0.944 29 H 0.107 0.893 30 H 0.058 0.942 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.067 0.933 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.470 -15.305 13.096 20.148 hybrid contribution 0.237 0.269 -0.936 1.002 sum -0.233 -15.036 12.160 19.339 Atomic orbital electron populations 1.21716 0.94433 1.01910 1.01996 1.22219 0.96695 0.87187 1.01457 1.61714 1.20968 1.19197 1.22438 1.22146 0.87534 1.01459 0.96913 1.21753 1.02103 1.02035 0.93924 1.23097 1.00519 0.88695 0.91486 0.88783 1.23651 0.99253 0.98461 0.97001 0.86542 1.21467 0.87861 0.96839 0.92839 1.49333 1.06990 1.25740 1.57117 1.18405 0.90635 0.77810 0.76486 1.90543 1.47253 1.54294 1.60251 1.21368 0.91174 1.17436 1.30208 0.89288 1.27017 1.03734 0.94817 0.92969 1.70159 1.35016 1.18561 1.21618 0.84980 0.75705 0.79299 0.78158 1.18904 1.19443 1.16835 1.21597 0.93050 0.91578 0.91996 1.24452 0.91666 1.03155 0.97587 0.85746 0.93460 0.91035 0.92553 0.94424 0.89314 0.94203 0.91376 0.91165 0.92773 0.91942 0.93305 0.92163 0.91369 0.91698 0.90555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 9.97 71.98 0.72 -1.67 16 2 C 0.05 0.88 5.54 86.30 0.48 1.35 16 3 N -0.52 -10.93 4.54 -862.56 -3.92 -14.85 16 4 C 0.05 0.87 5.62 86.30 0.48 1.35 16 5 C -0.14 -2.11 9.98 71.98 0.72 -1.39 16 6 C 0.07 1.80 4.52 46.36 0.21 2.01 16 7 H 0.09 2.34 7.89 -2.39 -0.02 2.32 16 8 C -0.16 -5.13 6.07 -9.89 -0.06 -5.19 16 9 H 0.12 3.54 7.21 -2.39 -0.02 3.52 16 10 C 0.13 5.42 6.85 86.53 0.59 6.01 16 11 N -0.65 -31.68 3.32 -813.03 -2.70 -34.38 16 12 C 0.56 34.15 7.81 86.36 0.67 34.82 16 13 O -0.64 -44.66 15.38 -4.33 -0.07 -44.73 16 14 C -0.57 -32.97 9.08 24.83 0.23 -32.74 16 15 H 0.09 4.67 6.48 -2.91 -0.02 4.65 16 16 C 0.03 1.68 5.48 85.30 0.47 2.15 16 17 N -0.82 -51.40 11.91 21.83 0.26 -51.14 16 18 Si 1.00 41.44 29.56 68.60 2.03 43.47 16 19 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 20 H -0.27 -10.67 7.11 99.48 0.71 -9.97 16 21 H -0.25 -9.33 7.11 99.48 0.71 -8.62 16 22 C 0.14 5.24 6.72 86.54 0.58 5.82 16 23 C -0.15 -4.50 7.24 -8.44 -0.06 -4.56 16 24 H 0.12 3.64 8.14 -2.39 -0.02 3.62 16 25 H 0.05 0.91 7.86 -2.39 -0.02 0.89 16 26 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 28 H 0.04 0.63 7.83 -2.39 -0.02 0.62 16 29 H 0.09 1.25 6.25 -2.38 -0.01 1.23 16 30 H 0.04 0.70 8.05 -2.39 -0.02 0.68 16 31 H 0.07 1.43 6.39 -2.39 -0.02 1.41 16 32 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.06 0.82 6.53 -2.39 -0.02 0.80 16 35 H 0.05 2.21 7.88 -2.38 -0.02 2.19 16 36 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 37 H 0.28 15.52 8.29 -92.71 -0.77 14.75 16 38 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 39 H 0.08 2.90 6.65 -2.39 -0.02 2.88 16 Total: -1.00 -76.11 315.22 1.66 -74.45 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: 1.02 Total: 19.20 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: 5.03 Total: 7.98 kcal Atomic # 7 Polarization: -94.01 SS G_CDS: -6.36 Total: -100.36 kcal Atomic # 8 Polarization: -44.66 SS G_CDS: -0.07 Total: -44.73 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 2.03 Total: 43.47 kcal Total: -76.11 1.66 -74.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395269377.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.597 kcal (2) G-P(sol) polarization free energy of solvation -76.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds