Wall clock time and date at job start Mon Mar 30 2020 21:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50693 * 120.00161 * 2 1 4 4 N 1.46501 * 109.46966 * 125.00159 * 3 2 1 5 5 C 1.34784 * 119.99820 * 180.02562 * 4 3 2 6 6 O 1.21278 * 120.00151 * 359.97438 * 5 4 3 7 7 C 1.50700 * 120.00025 * 180.02562 * 5 4 3 8 8 H 1.09006 * 109.47154 * 299.99967 * 7 5 4 9 9 C 1.52999 * 109.47016 * 59.99615 * 7 5 4 10 10 N 1.46899 * 109.47098 * 179.97438 * 7 5 4 11 11 C 1.48561 * 110.99814 * 187.71774 * 10 7 5 12 12 C 1.54375 * 104.59634 * 200.95805 * 11 10 7 13 13 C 1.54270 * 105.05872 * 23.85713 * 12 11 10 14 14 H 1.09001 * 110.31989 * 240.99922 * 13 12 11 15 15 C 1.50697 * 110.32498 * 118.89453 * 13 12 11 16 16 H 1.08001 * 119.99544 * 241.45571 * 15 13 12 17 17 C 1.37875 * 119.99973 * 61.45128 * 15 13 12 18 18 N 1.31517 * 120.00362 * 0.02562 * 17 15 13 19 19 Si 1.86798 * 120.00035 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.47184 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47219 * 240.00332 * 19 17 15 22 22 H 1.48496 * 109.47347 * 120.00390 * 19 17 15 23 23 C 1.48561 * 110.99883 * 72.30256 * 10 7 5 24 24 H 1.07998 * 120.00151 * 179.97438 * 1 2 3 25 25 H 1.08001 * 120.00360 * 0.02562 * 1 2 3 26 26 H 1.08003 * 119.99785 * 180.02562 * 2 1 3 27 27 H 1.08998 * 109.47154 * 5.00364 * 3 2 1 28 28 H 1.08996 * 109.47430 * 244.99925 * 3 2 1 29 29 H 0.97000 * 120.00399 * 359.97438 * 4 3 2 30 30 H 1.09008 * 109.46916 * 185.80181 * 9 7 5 31 31 H 1.09002 * 109.47224 * 305.79770 * 9 7 5 32 32 H 1.09000 * 109.47239 * 65.79890 * 9 7 5 33 33 H 1.08998 * 110.41281 * 82.18375 * 11 10 7 34 34 H 1.09000 * 110.41280 * 319.74349 * 11 10 7 35 35 H 1.08998 * 110.32795 * 264.96109 * 12 11 10 36 36 H 1.08999 * 110.32634 * 142.74669 * 12 11 10 37 37 H 0.97000 * 119.99468 * 359.97438 * 18 17 15 38 38 H 1.08996 * 110.40989 * 40.25958 * 23 10 7 39 39 H 1.08999 * 110.40614 * 277.81551 * 23 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3050 0.0000 4 7 2.9937 1.3317 1.1314 5 6 3.7783 2.4089 1.3335 6 8 3.7145 3.3558 0.5784 7 6 4.7357 2.4362 2.4970 8 1 4.1783 2.3380 3.4286 9 6 5.7255 1.2764 2.3702 10 7 5.4701 3.7084 2.4970 11 6 6.5515 3.6988 3.5156 12 6 6.8522 5.1901 3.7779 13 6 5.5614 5.9352 3.3797 14 1 5.7631 6.6345 2.5682 15 6 4.9902 6.6647 4.5682 16 1 4.0062 6.4122 4.9348 17 6 5.7238 7.6543 5.1875 18 7 6.9218 7.9620 4.7407 19 14 5.0154 8.5589 6.6603 20 1 3.6612 8.0294 6.9621 21 1 4.9233 10.0089 6.3532 22 1 5.8988 8.3574 7.8368 23 6 4.5896 4.8314 2.9102 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5401 0.9353 -0.0004 26 1 1.8499 -0.9354 -0.0004 27 1 1.3586 2.1316 0.0896 28 1 2.6212 1.4026 -0.9313 29 1 3.0445 0.5746 1.7356 30 1 6.3513 1.2338 3.2617 31 1 5.1769 0.3402 2.2664 32 1 6.3534 1.4289 1.4924 33 1 7.4363 3.1955 3.1259 34 1 6.2087 3.2135 4.4294 35 1 7.6869 5.5223 3.1608 36 1 7.0724 5.3520 4.8331 37 1 7.2895 7.4925 3.9757 38 1 3.9398 4.5234 3.7292 39 1 3.9973 5.1809 2.0645 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397598116.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:16:46 Heat of formation + Delta-G solvation = -16.475061 kcal Electronic energy + Delta-G solvation = -18826.126707 eV Core-core repulsion = 15961.964896 eV Total energy + Delta-G solvation = -2864.161811 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.91525 -37.88004 -35.80028 -34.11855 -32.92693 -31.55591 -28.44966 -28.01949 -26.45034 -23.89931 -23.58363 -20.80096 -20.55957 -19.55032 -19.33146 -17.07798 -16.75812 -16.37207 -15.60601 -15.17807 -14.67398 -14.26525 -13.95770 -13.75286 -13.42920 -13.29833 -12.61246 -12.36763 -12.23396 -12.15304 -11.88095 -11.47508 -11.41636 -10.96313 -10.85061 -10.62645 -10.36803 -10.09596 -10.08897 -9.82133 -9.43429 -9.36981 -9.03753 -8.40418 -8.26672 -7.85461 -6.28817 -4.00491 1.76268 2.84642 3.27830 3.45798 3.49711 3.62972 4.47441 4.50001 4.60842 4.75805 4.86871 5.09531 5.27124 5.32216 5.43722 5.49936 5.53800 5.60435 5.69478 5.79877 5.96687 6.10289 6.14442 6.18068 6.24171 6.34286 6.43900 6.49350 6.83877 6.97241 7.03222 7.34139 7.41449 7.49284 7.66718 7.77542 8.33742 8.41319 8.49172 8.94929 9.71890 11.10227 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.031573 B = 0.004607 C = 0.004257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.627161 B = 6076.866206 C = 6575.890541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.174 4.174 3 C 0.147 3.853 4 N -0.736 5.736 5 C 0.519 3.481 6 O -0.512 6.512 7 C 0.053 3.947 8 H 0.064 0.936 9 C -0.141 4.141 10 N -0.494 5.494 11 C 0.039 3.961 12 C -0.113 4.113 13 C 0.033 3.967 14 H 0.025 0.975 15 C -0.594 4.594 16 H 0.048 0.952 17 C 0.019 3.981 18 N -0.913 5.913 19 Si 1.072 2.928 20 H -0.291 1.291 21 H -0.287 1.287 22 H -0.288 1.288 23 C 0.050 3.950 24 H 0.102 0.898 25 H 0.100 0.900 26 H 0.114 0.886 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.398 0.602 30 H 0.068 0.932 31 H 0.058 0.942 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.034 0.966 35 H 0.045 0.955 36 H 0.069 0.931 37 H 0.274 0.726 38 H 0.031 0.969 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.643 -18.191 -5.387 20.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.192 4.192 3 C 0.024 3.976 4 N -0.391 5.391 5 C 0.305 3.695 6 O -0.385 6.385 7 C -0.060 4.060 8 H 0.081 0.919 9 C -0.199 4.199 10 N -0.218 5.218 11 C -0.089 4.089 12 C -0.152 4.152 13 C 0.014 3.986 14 H 0.043 0.957 15 C -0.633 4.633 16 H 0.066 0.934 17 C -0.186 4.186 18 N -0.550 5.550 19 Si 0.901 3.099 20 H -0.217 1.217 21 H -0.214 1.214 22 H -0.215 1.215 23 C -0.077 4.077 24 H 0.120 0.880 25 H 0.119 0.881 26 H 0.132 0.868 27 H 0.088 0.912 28 H 0.092 0.908 29 H 0.232 0.768 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.053 0.947 35 H 0.064 0.936 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.050 0.950 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.153 -16.209 -5.398 18.521 hybrid contribution -0.750 -1.860 -0.035 2.005 sum -7.903 -18.068 -5.433 20.456 Atomic orbital electron populations 1.23978 0.95816 1.02384 0.98493 1.23026 0.96232 0.98170 1.01793 1.20353 0.91875 0.95290 0.90100 1.46008 1.41689 1.20402 1.31001 1.20658 0.80398 0.81913 0.86540 1.90706 1.66779 1.34760 1.46294 1.21739 0.94746 0.94015 0.95494 0.91887 1.21832 0.99094 0.95355 1.03601 1.65330 1.10023 1.00832 1.45651 1.23109 0.94087 0.99365 0.92296 1.22510 0.99508 0.91925 1.01226 1.19534 0.90631 0.92208 0.96266 0.95669 1.22073 1.04155 1.21912 1.15117 0.93407 1.25758 0.95156 0.95779 1.01879 1.70703 1.16154 1.42290 1.25808 0.83502 0.74881 0.76118 0.75387 1.21691 1.21359 1.21453 1.23220 0.95524 0.91281 0.97631 0.87969 0.88124 0.86771 0.91218 0.90781 0.76812 0.91321 0.92328 0.91209 0.91598 0.94738 0.93621 0.91235 0.91442 0.95031 0.90978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.16 14.32 29.02 0.42 -0.75 16 2 C -0.17 -1.32 9.63 -36.03 -0.35 -1.67 16 3 C 0.15 1.55 6.11 -5.20 -0.03 1.52 16 4 N -0.74 -8.49 5.40 -61.48 -0.33 -8.82 16 5 C 0.52 8.36 6.98 -10.98 -0.08 8.28 16 6 O -0.51 -10.58 15.04 5.56 0.08 -10.50 16 7 C 0.05 0.83 2.34 -68.87 -0.16 0.67 16 8 H 0.06 0.96 7.82 -51.93 -0.41 0.55 16 9 C -0.14 -1.69 8.62 37.16 0.32 -1.37 16 10 N -0.49 -9.91 4.86 -223.41 -1.09 -10.99 16 11 C 0.04 0.76 5.08 -2.18 -0.01 0.75 16 12 C -0.11 -2.68 5.03 -25.35 -0.13 -2.81 16 13 C 0.03 0.86 2.65 -90.39 -0.24 0.62 16 14 H 0.03 0.73 8.04 -51.93 -0.42 0.31 16 15 C -0.59 -17.00 8.37 -34.44 -0.29 -17.29 16 16 H 0.05 1.37 7.58 -52.49 -0.40 0.97 16 17 C 0.02 0.54 5.09 -17.82 -0.09 0.45 16 18 N -0.91 -27.68 13.27 55.43 0.74 -26.94 16 19 Si 1.07 25.55 29.90 -169.99 -5.08 20.47 16 20 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 23 C 0.05 1.17 5.39 -2.18 -0.01 1.16 16 24 H 0.10 0.54 8.06 -52.49 -0.42 0.12 16 25 H 0.10 0.70 7.84 -52.49 -0.41 0.29 16 26 H 0.11 0.70 8.06 -52.48 -0.42 0.28 16 27 H 0.07 0.82 7.79 -51.93 -0.40 0.41 16 28 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.40 3.41 7.82 -40.82 -0.32 3.09 16 30 H 0.07 0.79 7.11 -51.92 -0.37 0.42 16 31 H 0.06 0.52 7.41 -51.93 -0.38 0.13 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.07 1.14 7.79 -51.93 -0.40 0.73 16 34 H 0.03 0.64 7.94 -51.93 -0.41 0.23 16 35 H 0.04 1.07 7.92 -51.93 -0.41 0.66 16 36 H 0.07 1.78 7.24 -51.93 -0.38 1.41 16 37 H 0.27 8.26 6.00 -40.82 -0.25 8.02 16 38 H 0.03 0.73 7.35 -51.93 -0.38 0.35 16 39 H 0.07 1.77 7.08 -51.93 -0.37 1.40 16 LS Contribution 314.52 15.07 4.74 4.74 Total: -1.00 -33.29 314.52 -7.79 -41.08 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -6.20 Total: 1.39 kcal Atomic # 6 Polarization: -9.78 SS G_CDS: -0.65 Total: -10.42 kcal Atomic # 7 Polarization: -46.08 SS G_CDS: -0.68 Total: -46.76 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: 0.08 Total: -10.50 kcal Atomic # 14 Polarization: 25.55 SS G_CDS: -5.08 Total: 20.47 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -33.29 -7.79 -41.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397598116.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.601 kcal (2) G-P(sol) polarization free energy of solvation -33.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds