Wall clock time and date at job start Mon Mar 30 2020 21:16:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50693 * 120.00161 * 2 1 4 4 N 1.46501 * 109.46966 * 125.00159 * 3 2 1 5 5 C 1.34784 * 119.99820 * 180.02562 * 4 3 2 6 6 O 1.21278 * 120.00151 * 359.97438 * 5 4 3 7 7 C 1.50700 * 120.00025 * 180.02562 * 5 4 3 8 8 H 1.09006 * 109.47154 * 299.99967 * 7 5 4 9 9 C 1.52999 * 109.47016 * 59.99615 * 7 5 4 10 10 N 1.46899 * 109.47098 * 179.97438 * 7 5 4 11 11 C 1.48561 * 110.99814 * 187.71774 * 10 7 5 12 12 C 1.54375 * 104.59634 * 200.95805 * 11 10 7 13 13 C 1.54270 * 105.05872 * 23.85713 * 12 11 10 14 14 H 1.09001 * 110.31989 * 240.99922 * 13 12 11 15 15 C 1.50697 * 110.32498 * 118.89453 * 13 12 11 16 16 H 1.08001 * 119.99544 * 241.45571 * 15 13 12 17 17 C 1.37875 * 119.99973 * 61.45128 * 15 13 12 18 18 N 1.31517 * 120.00362 * 0.02562 * 17 15 13 19 19 Si 1.86798 * 120.00035 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.47184 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47219 * 240.00332 * 19 17 15 22 22 H 1.48496 * 109.47347 * 120.00390 * 19 17 15 23 23 C 1.48561 * 110.99883 * 72.30256 * 10 7 5 24 24 H 1.07998 * 120.00151 * 179.97438 * 1 2 3 25 25 H 1.08001 * 120.00360 * 0.02562 * 1 2 3 26 26 H 1.08003 * 119.99785 * 180.02562 * 2 1 3 27 27 H 1.08998 * 109.47154 * 5.00364 * 3 2 1 28 28 H 1.08996 * 109.47430 * 244.99925 * 3 2 1 29 29 H 0.97000 * 120.00399 * 359.97438 * 4 3 2 30 30 H 1.09008 * 109.46916 * 185.80181 * 9 7 5 31 31 H 1.09002 * 109.47224 * 305.79770 * 9 7 5 32 32 H 1.09000 * 109.47239 * 65.79890 * 9 7 5 33 33 H 1.08998 * 110.41281 * 82.18375 * 11 10 7 34 34 H 1.09000 * 110.41280 * 319.74349 * 11 10 7 35 35 H 1.08998 * 110.32795 * 264.96109 * 12 11 10 36 36 H 1.08999 * 110.32634 * 142.74669 * 12 11 10 37 37 H 0.97000 * 119.99468 * 359.97438 * 18 17 15 38 38 H 1.08996 * 110.40989 * 40.25958 * 23 10 7 39 39 H 1.08999 * 110.40614 * 277.81551 * 23 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3050 0.0000 4 7 2.9937 1.3317 1.1314 5 6 3.7783 2.4089 1.3335 6 8 3.7145 3.3558 0.5784 7 6 4.7357 2.4362 2.4970 8 1 4.1783 2.3380 3.4286 9 6 5.7255 1.2764 2.3702 10 7 5.4701 3.7084 2.4970 11 6 6.5515 3.6988 3.5156 12 6 6.8522 5.1901 3.7779 13 6 5.5614 5.9352 3.3797 14 1 5.7631 6.6345 2.5682 15 6 4.9902 6.6647 4.5682 16 1 4.0062 6.4122 4.9348 17 6 5.7238 7.6543 5.1875 18 7 6.9218 7.9620 4.7407 19 14 5.0154 8.5589 6.6603 20 1 3.6612 8.0294 6.9621 21 1 4.9233 10.0089 6.3532 22 1 5.8988 8.3574 7.8368 23 6 4.5896 4.8314 2.9102 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5401 0.9353 -0.0004 26 1 1.8499 -0.9354 -0.0004 27 1 1.3586 2.1316 0.0896 28 1 2.6212 1.4026 -0.9313 29 1 3.0445 0.5746 1.7356 30 1 6.3513 1.2338 3.2617 31 1 5.1769 0.3402 2.2664 32 1 6.3534 1.4289 1.4924 33 1 7.4363 3.1955 3.1259 34 1 6.2087 3.2135 4.4294 35 1 7.6869 5.5223 3.1608 36 1 7.0724 5.3520 4.8331 37 1 7.2895 7.4925 3.9757 38 1 3.9398 4.5234 3.7292 39 1 3.9973 5.1809 2.0645 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397598116.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:16:45 Heat of formation + Delta-G solvation = -40.923462 kcal Electronic energy + Delta-G solvation = -18827.186869 eV Core-core repulsion = 15961.964896 eV Total energy + Delta-G solvation = -2865.221973 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.24180 -39.47868 -36.78376 -35.89309 -34.10469 -33.04681 -30.15278 -29.74731 -27.39748 -26.01123 -24.83587 -22.33216 -21.58415 -21.23918 -20.57742 -18.90198 -18.15459 -17.57450 -16.73848 -16.62639 -16.14755 -15.75857 -15.41885 -15.20873 -14.95943 -14.19508 -14.03450 -13.84048 -13.70701 -13.41067 -13.26792 -13.05484 -12.75106 -12.50364 -12.24000 -12.17624 -12.05477 -11.93504 -11.81951 -11.40534 -10.96327 -10.58598 -10.50763 -10.44658 -10.05867 -9.43230 -8.60746 -6.33849 1.15121 1.52186 1.60617 1.61771 1.77982 2.23533 2.56488 3.07994 3.19519 3.71951 3.84647 3.89735 3.97854 4.09762 4.14648 4.24558 4.37142 4.40045 4.53660 4.63976 4.71950 4.77676 4.84786 4.87498 4.98348 5.06888 5.10851 5.19876 5.34423 5.36517 5.61245 5.61871 5.69507 5.77229 6.01853 6.14182 6.21079 6.56199 6.65019 7.26123 7.47540 8.78293 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.031573 B = 0.004607 C = 0.004257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.627161 B = 6076.866206 C = 6575.890541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.178 4.178 3 C 0.145 3.855 4 N -0.713 5.713 5 C 0.516 3.484 6 O -0.569 6.569 7 C 0.048 3.952 8 H 0.077 0.923 9 C -0.134 4.134 10 N -0.506 5.506 11 C 0.052 3.948 12 C -0.106 4.106 13 C 0.021 3.979 14 H -0.016 1.016 15 C -0.608 4.608 16 H 0.043 0.957 17 C -0.030 4.030 18 N -0.934 5.934 19 Si 1.120 2.880 20 H -0.274 1.274 21 H -0.281 1.281 22 H -0.275 1.275 23 C 0.068 3.932 24 H 0.125 0.875 25 H 0.094 0.906 26 H 0.137 0.863 27 H 0.052 0.948 28 H 0.064 0.936 29 H 0.416 0.584 30 H 0.080 0.920 31 H 0.096 0.904 32 H 0.059 0.941 33 H 0.096 0.904 34 H 0.051 0.949 35 H 0.036 0.964 36 H 0.047 0.953 37 H 0.262 0.738 38 H 0.030 0.970 39 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.443 -21.107 -4.368 23.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.196 4.196 3 C 0.022 3.978 4 N -0.368 5.368 5 C 0.302 3.698 6 O -0.447 6.447 7 C -0.064 4.064 8 H 0.094 0.906 9 C -0.192 4.192 10 N -0.231 5.231 11 C -0.075 4.075 12 C -0.144 4.144 13 C 0.002 3.998 14 H 0.002 0.998 15 C -0.646 4.646 16 H 0.061 0.939 17 C -0.228 4.228 18 N -0.571 5.571 19 Si 0.942 3.058 20 H -0.199 1.199 21 H -0.207 1.207 22 H -0.201 1.201 23 C -0.060 4.060 24 H 0.143 0.857 25 H 0.112 0.888 26 H 0.154 0.846 27 H 0.071 0.929 28 H 0.082 0.918 29 H 0.254 0.746 30 H 0.099 0.901 31 H 0.115 0.885 32 H 0.078 0.922 33 H 0.114 0.886 34 H 0.069 0.931 35 H 0.055 0.945 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.048 0.952 39 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -7.969 -19.206 -4.379 21.250 hybrid contribution -0.571 -0.990 -0.434 1.222 sum -8.540 -20.196 -4.813 22.449 Atomic orbital electron populations 1.24181 0.95694 1.03206 0.96815 1.22935 0.96301 0.97162 1.03171 1.20406 0.91434 0.96764 0.89227 1.45828 1.40204 1.19584 1.31145 1.20836 0.80713 0.82122 0.86129 1.90693 1.68663 1.37022 1.48306 1.21932 0.95642 0.92995 0.95833 0.90569 1.21853 0.98516 0.95068 1.03723 1.65220 1.10027 1.02103 1.45720 1.23035 0.95118 0.96183 0.93168 1.22290 0.97714 0.95034 0.99403 1.19529 0.93015 0.92780 0.94456 0.99754 1.22364 1.04021 1.22530 1.15734 0.93890 1.27252 0.94787 0.96511 1.04262 1.70820 1.17276 1.42949 1.26094 0.82886 0.75167 0.75201 0.72503 1.19917 1.20740 1.20081 1.22833 0.94891 0.91831 0.96421 0.85717 0.88782 0.84558 0.92936 0.91758 0.74624 0.90147 0.88494 0.92151 0.88576 0.93063 0.94487 0.93461 0.92723 0.95180 0.93164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.80 14.32 67.79 0.97 -0.83 16 2 C -0.18 -2.23 9.63 25.65 0.25 -1.98 16 3 C 0.14 2.91 6.11 85.63 0.52 3.44 16 4 N -0.71 -15.05 5.40 -466.80 -2.52 -17.57 16 5 C 0.52 16.15 6.98 87.66 0.61 16.76 16 6 O -0.57 -24.08 15.04 -3.02 -0.05 -24.12 16 7 C 0.05 1.42 2.34 44.17 0.10 1.52 16 8 H 0.08 2.09 7.82 -2.38 -0.02 2.07 16 9 C -0.13 -2.70 8.62 71.98 0.62 -2.08 16 10 N -0.51 -20.05 4.86 -860.74 -4.19 -24.24 16 11 C 0.05 1.95 5.08 86.45 0.44 2.39 16 12 C -0.11 -5.13 5.03 31.49 0.16 -4.97 16 13 C 0.02 1.17 2.65 -10.64 -0.03 1.14 16 14 H -0.02 -0.97 8.04 -2.39 -0.02 -0.99 16 15 C -0.61 -35.73 8.37 25.60 0.21 -35.52 16 16 H 0.04 2.50 7.58 -2.91 -0.02 2.48 16 17 C -0.03 -1.73 5.09 84.65 0.43 -1.30 16 18 N -0.93 -58.09 13.27 21.45 0.28 -57.81 16 19 Si 1.12 51.37 29.90 68.60 2.05 53.42 16 20 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 21 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 22 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 23 C 0.07 3.25 5.39 86.45 0.47 3.72 16 24 H 0.12 0.88 8.06 -2.91 -0.02 0.85 16 25 H 0.09 1.17 7.84 -2.91 -0.02 1.15 16 26 H 0.14 1.15 8.06 -2.91 -0.02 1.13 16 27 H 0.05 1.24 7.79 -2.39 -0.02 1.22 16 28 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.42 5.65 7.82 -92.71 -0.72 4.93 16 30 H 0.08 1.47 7.11 -2.38 -0.02 1.46 16 31 H 0.10 1.22 7.41 -2.39 -0.02 1.20 16 32 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.10 3.06 7.79 -2.39 -0.02 3.04 16 34 H 0.05 1.76 7.94 -2.39 -0.02 1.74 16 35 H 0.04 1.80 7.92 -2.39 -0.02 1.78 16 36 H 0.05 2.47 7.24 -2.39 -0.02 2.45 16 37 H 0.26 16.51 6.00 -92.71 -0.56 15.95 16 38 H 0.03 1.42 7.35 -2.39 -0.02 1.40 16 39 H 0.05 2.59 7.08 -2.39 -0.02 2.57 16 Total: -1.00 -75.88 314.52 0.85 -75.03 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: 0.51 Total: 13.00 kcal Atomic # 6 Polarization: -22.47 SS G_CDS: 4.76 Total: -17.72 kcal Atomic # 7 Polarization: -93.19 SS G_CDS: -6.42 Total: -99.62 kcal Atomic # 8 Polarization: -24.08 SS G_CDS: -0.05 Total: -24.12 kcal Atomic # 14 Polarization: 51.37 SS G_CDS: 2.05 Total: 53.42 kcal Total: -75.88 0.85 -75.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397598116.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.107 kcal (2) G-P(sol) polarization free energy of solvation -75.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds