Wall clock time and date at job start Mon Mar 30 2020 21:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.47459 * 2 1 4 4 C 1.50707 * 109.46851 * 240.00339 * 2 1 3 5 5 O 1.21283 * 119.99955 * 275.84895 * 4 2 1 6 6 N 1.34778 * 120.00040 * 95.84903 * 4 2 1 7 7 C 1.46492 * 119.99790 * 185.02712 * 6 4 2 8 8 C 1.53006 * 109.46847 * 175.63369 * 7 6 4 9 9 C 1.50703 * 115.55038 * 65.67328 * 8 7 6 10 10 H 1.08001 * 120.00037 * 265.67628 * 9 8 7 11 11 C 1.37879 * 119.99833 * 85.67481 * 9 8 7 12 12 N 1.31515 * 120.00040 * 3.23273 * 11 9 8 13 13 Si 1.86801 * 119.99885 * 183.23218 * 11 9 8 14 14 H 1.48503 * 109.46862 * 0.02562 * 13 11 9 15 15 H 1.48503 * 109.46719 * 120.00175 * 13 11 9 16 16 H 1.48497 * 109.46982 * 240.00094 * 13 11 9 17 17 C 1.52998 * 117.49768 * 280.00398 * 8 7 6 18 18 C 1.53000 * 117.49795 * 211.34394 * 8 7 6 19 19 C 1.53006 * 109.47078 * 120.00880 * 2 1 3 20 20 C 1.53939 * 113.72889 * 276.71927 * 19 2 1 21 21 N 1.47954 * 86.18161 * 221.92336 * 20 19 2 22 22 C 1.47958 * 90.76421 * 24.69344 * 21 20 19 23 23 H 1.09001 * 109.47299 * 63.77289 * 1 2 3 24 24 H 1.08999 * 109.47521 * 183.77820 * 1 2 3 25 25 H 1.09002 * 109.46888 * 303.77637 * 1 2 3 26 26 H 0.96996 * 119.99239 * 5.30353 * 6 4 2 27 27 H 1.09000 * 109.47416 * 295.62962 * 7 6 4 28 28 H 1.08996 * 109.47624 * 55.63140 * 7 6 4 29 29 H 0.96998 * 119.99923 * 185.01945 * 12 11 9 30 30 H 1.08997 * 117.49778 * 359.97438 * 17 8 7 31 31 H 1.08993 * 117.49891 * 145.02359 * 17 8 7 32 32 H 1.09004 * 117.49898 * 214.97848 * 18 8 7 33 33 H 1.09004 * 117.49658 * 359.97438 * 18 8 7 34 34 H 1.08988 * 112.94160 * 48.42700 * 19 2 1 35 35 H 1.08997 * 113.75877 * 336.24642 * 20 19 2 36 36 H 1.09010 * 113.75363 * 107.60543 * 20 19 2 37 37 H 1.00903 * 111.00517 * 271.80066 * 21 20 19 38 38 H 1.09004 * 113.76068 * 220.99446 * 22 21 20 39 39 H 1.09005 * 113.75912 * 89.62552 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2306 5 8 2.1334 -1.9190 -1.2342 6 7 2.3690 -0.0026 -2.3270 7 6 2.7518 -0.6977 -3.5584 8 6 2.9781 0.3262 -4.6726 9 6 4.1415 1.2622 -4.4688 10 1 3.9828 2.2308 -4.0182 11 6 5.4085 0.8820 -4.8576 12 7 5.5922 -0.2706 -5.4639 13 14 6.8642 2.0039 -4.5232 14 1 6.3942 3.2322 -3.8335 15 1 7.8457 1.2975 -3.6613 16 1 7.5097 2.3735 -5.8084 17 6 1.7424 0.8799 -5.3849 18 6 2.6633 -0.1079 -6.1056 19 6 2.0400 -0.7215 1.2492 20 6 2.0910 0.1709 2.5025 21 7 3.3952 -0.4686 2.7837 22 6 3.5751 -0.7787 1.3482 23 1 -0.3634 0.4542 -0.9219 24 1 -0.3634 -1.0254 0.0677 25 1 -0.3633 0.5713 0.8542 26 1 2.3617 0.9669 -2.2994 27 1 3.6708 -1.2586 -3.3884 28 1 1.9565 -1.3832 -3.8510 29 1 6.4906 -0.5713 -5.6721 30 1 0.7683 0.5144 -5.0601 31 1 1.7711 1.9209 -5.7065 32 1 3.2975 0.2838 -6.9010 33 1 2.2954 -1.1231 -6.2546 34 1 1.5536 -1.6830 1.4127 35 1 2.1626 1.2357 2.2808 36 1 1.3206 -0.0607 3.2381 37 1 3.2753 -1.3126 3.3236 38 1 3.9906 -1.7690 1.1615 39 1 4.0809 0.0085 0.7890 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404172201.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:12:52 Heat of formation + Delta-G solvation = 8.410263 kcal Electronic energy + Delta-G solvation = -19004.740762 eV Core-core repulsion = 16141.658060 eV Total energy + Delta-G solvation = -2863.082702 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.19947 -38.49835 -36.67163 -33.42027 -32.95104 -31.96990 -26.82530 -26.63674 -25.90982 -25.28235 -22.86894 -21.18290 -20.31354 -19.64086 -19.06319 -16.93194 -16.42231 -16.07095 -15.27063 -14.81406 -14.64602 -14.14915 -13.98767 -13.63950 -13.08334 -12.94775 -12.71011 -12.48498 -12.28667 -12.18376 -11.75504 -11.60458 -11.21510 -11.01230 -10.94964 -10.87860 -10.61038 -10.52565 -10.26384 -9.60205 -9.18385 -9.07488 -8.55134 -8.50469 -8.27273 -8.09417 -6.10384 -4.19599 3.17849 3.24259 3.33498 3.35121 3.77690 3.99890 4.34148 4.47408 4.68117 5.08186 5.13422 5.18666 5.28917 5.30498 5.35960 5.58309 5.65006 5.71181 5.75005 5.81429 5.94650 5.95157 6.03760 6.12619 6.26211 6.31759 6.44486 6.54015 6.67817 6.85763 7.09806 7.23123 7.26915 7.38568 7.51194 7.78694 8.28593 8.31549 8.81778 8.87109 9.48084 10.97726 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.020537 B = 0.006326 C = 0.005333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.074392 B = 4425.066371 C = 5248.947441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.103 4.103 3 H 0.089 0.911 4 C 0.509 3.491 5 O -0.558 6.558 6 N -0.703 5.703 7 C 0.164 3.836 8 C 0.023 3.977 9 C -0.498 4.498 10 H 0.060 0.940 11 C 0.073 3.927 12 N -0.875 5.875 13 Si 0.888 3.112 14 H -0.272 1.272 15 H -0.283 1.283 16 H -0.284 1.284 17 C -0.211 4.211 18 C -0.142 4.142 19 C -0.134 4.134 20 C 0.022 3.978 21 N -0.663 5.663 22 C 0.023 3.977 23 H 0.060 0.940 24 H 0.060 0.940 25 H 0.063 0.937 26 H 0.400 0.600 27 H 0.067 0.933 28 H 0.037 0.963 29 H 0.261 0.739 30 H 0.064 0.936 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.063 0.937 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.071 0.929 37 H 0.334 0.666 38 H 0.075 0.925 39 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.313 1.504 11.095 13.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.125 4.125 3 H 0.107 0.893 4 C 0.294 3.706 5 O -0.437 6.437 6 N -0.351 5.351 7 C 0.040 3.960 8 C 0.022 3.978 9 C -0.536 4.536 10 H 0.078 0.922 11 C -0.131 4.131 12 N -0.511 5.511 13 Si 0.716 3.284 14 H -0.197 1.197 15 H -0.209 1.209 16 H -0.210 1.210 17 C -0.248 4.248 18 C -0.180 4.180 19 C -0.154 4.154 20 C -0.108 4.108 21 N -0.289 5.289 22 C -0.107 4.107 23 H 0.079 0.921 24 H 0.079 0.921 25 H 0.082 0.918 26 H 0.234 0.766 27 H 0.085 0.915 28 H 0.056 0.944 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.096 0.904 32 H 0.105 0.895 33 H 0.081 0.919 34 H 0.115 0.885 35 H 0.115 0.885 36 H 0.089 0.911 37 H 0.148 0.852 38 H 0.094 0.906 39 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -7.535 1.165 11.122 13.485 hybrid contribution 0.223 0.170 -0.271 0.390 sum -7.312 1.335 10.851 13.153 Atomic orbital electron populations 1.21655 0.92876 1.02583 1.02301 1.21317 0.97571 1.00284 0.93351 0.89250 1.20439 0.77936 0.87874 0.84343 1.90638 1.55048 1.14459 1.83561 1.46061 1.66627 1.10554 1.11877 1.20973 0.98200 0.93916 0.82866 1.19062 0.92965 0.96201 0.89523 1.20390 0.90812 1.01158 1.41232 0.92171 1.24982 0.98848 0.95376 0.93853 1.70008 1.21698 1.20284 1.39102 0.86603 0.82826 0.80978 0.78016 1.19668 1.20904 1.21005 1.23015 0.94176 0.98492 1.09159 1.22469 1.01341 0.96226 0.98001 1.24110 0.97424 0.99713 0.94123 1.23735 0.91763 0.99858 0.95470 1.65072 1.27244 1.26246 1.10332 1.23672 0.94940 1.02338 0.89702 0.92066 0.92116 0.91792 0.76560 0.91485 0.94426 0.92912 0.91778 0.90386 0.89510 0.91851 0.88515 0.88472 0.91094 0.85171 0.90624 0.88396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.17 37.16 0.34 -1.16 16 2 C -0.10 -1.33 2.49 -91.77 -0.23 -1.56 16 3 H 0.09 1.04 7.87 -51.93 -0.41 0.63 16 4 C 0.51 9.04 6.30 -10.98 -0.07 8.97 16 5 O -0.56 -11.93 16.46 5.55 0.09 -11.84 16 6 N -0.70 -13.23 5.48 -60.29 -0.33 -13.56 16 7 C 0.16 3.66 5.51 -4.04 -0.02 3.64 16 8 C 0.02 0.54 1.46 -155.66 -0.23 0.31 16 9 C -0.50 -12.70 8.62 -34.44 -0.30 -13.00 16 10 H 0.06 1.51 7.82 -52.49 -0.41 1.10 16 11 C 0.07 1.94 5.43 -17.82 -0.10 1.84 16 12 N -0.87 -24.22 12.65 55.43 0.70 -23.51 16 13 Si 0.89 20.51 29.54 -169.99 -5.02 15.49 16 14 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 15 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 16 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 17 C -0.21 -4.36 9.96 -26.69 -0.27 -4.62 16 18 C -0.14 -3.25 9.13 -26.69 -0.24 -3.50 16 19 C -0.13 -1.63 2.83 -89.68 -0.25 -1.88 16 20 C 0.02 0.22 8.46 -2.77 -0.02 0.20 16 21 N -0.66 -7.84 8.55 -117.02 -1.00 -8.84 16 22 C 0.02 0.31 7.91 -2.77 -0.02 0.29 16 23 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 24 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.40 6.92 8.30 -40.82 -0.34 6.58 16 27 H 0.07 1.72 8.14 -51.93 -0.42 1.30 16 28 H 0.04 0.84 8.09 -51.93 -0.42 0.42 16 29 H 0.26 6.95 8.32 -40.82 -0.34 6.61 16 30 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 31 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 32 H 0.09 2.13 8.14 -51.93 -0.42 1.71 16 33 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 34 H 0.10 1.22 8.14 -51.94 -0.42 0.80 16 35 H 0.10 0.95 7.96 -51.93 -0.41 0.54 16 36 H 0.07 0.59 8.14 -51.92 -0.42 0.17 16 37 H 0.33 3.40 8.89 -39.29 -0.35 3.05 16 38 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.10 1.44 8.10 -51.93 -0.42 1.01 16 LS Contribution 326.19 15.07 4.92 4.92 Total: -1.00 -29.19 326.19 -8.60 -37.79 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: -6.55 Total: 10.03 kcal Atomic # 6 Polarization: -9.06 SS G_CDS: -1.41 Total: -10.47 kcal Atomic # 7 Polarization: -45.28 SS G_CDS: -0.63 Total: -45.91 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: 0.09 Total: -11.84 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -29.19 -8.60 -37.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404172201.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.203 kcal (2) G-P(sol) polarization free energy of solvation -29.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds