Wall clock time and date at job start Mon Mar 30 2020 21:12:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.47459 * 2 1 4 4 C 1.50707 * 109.46851 * 240.00339 * 2 1 3 5 5 O 1.21283 * 119.99955 * 275.84895 * 4 2 1 6 6 N 1.34778 * 120.00040 * 95.84903 * 4 2 1 7 7 C 1.46492 * 119.99790 * 185.02712 * 6 4 2 8 8 C 1.53006 * 109.46847 * 175.63369 * 7 6 4 9 9 C 1.50703 * 115.55038 * 65.67328 * 8 7 6 10 10 H 1.08001 * 120.00037 * 265.67628 * 9 8 7 11 11 C 1.37879 * 119.99833 * 85.67481 * 9 8 7 12 12 N 1.31515 * 120.00040 * 3.23273 * 11 9 8 13 13 Si 1.86801 * 119.99885 * 183.23218 * 11 9 8 14 14 H 1.48503 * 109.46862 * 0.02562 * 13 11 9 15 15 H 1.48503 * 109.46719 * 120.00175 * 13 11 9 16 16 H 1.48497 * 109.46982 * 240.00094 * 13 11 9 17 17 C 1.52998 * 117.49768 * 280.00398 * 8 7 6 18 18 C 1.53000 * 117.49795 * 211.34394 * 8 7 6 19 19 C 1.53006 * 109.47078 * 120.00880 * 2 1 3 20 20 C 1.53939 * 113.72889 * 276.71927 * 19 2 1 21 21 N 1.47954 * 86.18161 * 221.92336 * 20 19 2 22 22 C 1.47958 * 90.76421 * 24.69344 * 21 20 19 23 23 H 1.09001 * 109.47299 * 63.77289 * 1 2 3 24 24 H 1.08999 * 109.47521 * 183.77820 * 1 2 3 25 25 H 1.09002 * 109.46888 * 303.77637 * 1 2 3 26 26 H 0.96996 * 119.99239 * 5.30353 * 6 4 2 27 27 H 1.09000 * 109.47416 * 295.62962 * 7 6 4 28 28 H 1.08996 * 109.47624 * 55.63140 * 7 6 4 29 29 H 0.96998 * 119.99923 * 185.01945 * 12 11 9 30 30 H 1.08997 * 117.49778 * 359.97438 * 17 8 7 31 31 H 1.08993 * 117.49891 * 145.02359 * 17 8 7 32 32 H 1.09004 * 117.49898 * 214.97848 * 18 8 7 33 33 H 1.09004 * 117.49658 * 359.97438 * 18 8 7 34 34 H 1.08988 * 112.94160 * 48.42700 * 19 2 1 35 35 H 1.08997 * 113.75877 * 336.24642 * 20 19 2 36 36 H 1.09010 * 113.75363 * 107.60543 * 20 19 2 37 37 H 1.00903 * 111.00517 * 271.80066 * 21 20 19 38 38 H 1.09004 * 113.76068 * 220.99446 * 22 21 20 39 39 H 1.09005 * 113.75912 * 89.62552 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2306 5 8 2.1334 -1.9190 -1.2342 6 7 2.3690 -0.0026 -2.3270 7 6 2.7518 -0.6977 -3.5584 8 6 2.9781 0.3262 -4.6726 9 6 4.1415 1.2622 -4.4688 10 1 3.9828 2.2308 -4.0182 11 6 5.4085 0.8820 -4.8576 12 7 5.5922 -0.2706 -5.4639 13 14 6.8642 2.0039 -4.5232 14 1 6.3942 3.2322 -3.8335 15 1 7.8457 1.2975 -3.6613 16 1 7.5097 2.3735 -5.8084 17 6 1.7424 0.8799 -5.3849 18 6 2.6633 -0.1079 -6.1056 19 6 2.0400 -0.7215 1.2492 20 6 2.0910 0.1709 2.5025 21 7 3.3952 -0.4686 2.7837 22 6 3.5751 -0.7787 1.3482 23 1 -0.3634 0.4542 -0.9219 24 1 -0.3634 -1.0254 0.0677 25 1 -0.3633 0.5713 0.8542 26 1 2.3617 0.9669 -2.2994 27 1 3.6708 -1.2586 -3.3884 28 1 1.9565 -1.3832 -3.8510 29 1 6.4906 -0.5713 -5.6721 30 1 0.7683 0.5144 -5.0601 31 1 1.7711 1.9209 -5.7065 32 1 3.2975 0.2838 -6.9010 33 1 2.2954 -1.1231 -6.2546 34 1 1.5536 -1.6830 1.4127 35 1 2.1626 1.2357 2.2808 36 1 1.3206 -0.0607 3.2381 37 1 3.2753 -1.3126 3.3236 38 1 3.9906 -1.7690 1.1615 39 1 4.0809 0.0085 0.7890 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404172201.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:12:51 Heat of formation + Delta-G solvation = -12.550054 kcal Electronic energy + Delta-G solvation = -19005.649670 eV Core-core repulsion = 16141.658060 eV Total energy + Delta-G solvation = -2863.991610 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.37022 -39.82207 -38.41786 -34.96481 -34.16173 -33.91068 -28.35585 -27.72786 -27.27679 -26.77740 -24.07775 -22.93315 -21.45098 -21.31207 -20.51840 -18.40277 -17.83049 -17.35469 -16.81309 -16.57835 -16.19946 -15.67770 -15.23824 -14.93978 -14.48107 -14.40543 -13.98326 -13.65804 -13.46849 -13.39111 -13.21577 -13.07315 -12.90720 -12.86681 -12.34140 -12.23991 -12.03867 -11.81512 -11.61929 -11.40303 -10.97983 -10.69007 -10.43457 -10.03013 -9.82984 -9.46912 -8.11929 -6.25097 1.39955 1.43923 1.52710 1.76233 2.36594 2.43044 3.07768 3.17533 3.40072 3.54109 3.69223 3.99065 4.20411 4.23867 4.33100 4.40678 4.53719 4.57981 4.63690 4.71419 4.72412 4.77946 4.83481 4.92250 4.97826 5.00343 5.02739 5.10029 5.24313 5.27519 5.32788 5.56791 5.60965 5.70456 5.76904 6.35179 6.37978 6.79211 6.84944 7.41388 7.45312 8.96205 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.020537 B = 0.006326 C = 0.005333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.074392 B = 4425.066371 C = 5248.947441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.094 4.094 3 H 0.109 0.891 4 C 0.506 3.494 5 O -0.598 6.598 6 N -0.700 5.700 7 C 0.181 3.819 8 C 0.001 3.999 9 C -0.500 4.500 10 H 0.065 0.935 11 C 0.023 3.977 12 N -0.909 5.909 13 Si 0.946 3.054 14 H -0.259 1.259 15 H -0.289 1.289 16 H -0.285 1.285 17 C -0.175 4.175 18 C -0.156 4.156 19 C -0.131 4.131 20 C 0.036 3.964 21 N -0.669 5.669 22 C 0.014 3.986 23 H 0.061 0.939 24 H 0.049 0.951 25 H 0.097 0.903 26 H 0.410 0.590 27 H 0.022 0.978 28 H 0.035 0.965 29 H 0.258 0.742 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.091 0.909 35 H 0.107 0.893 36 H 0.098 0.902 37 H 0.343 0.657 38 H 0.056 0.944 39 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.898 3.461 12.841 16.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.116 4.116 3 H 0.128 0.872 4 C 0.294 3.706 5 O -0.480 6.480 6 N -0.349 5.349 7 C 0.056 3.944 8 C 0.001 3.999 9 C -0.538 4.538 10 H 0.083 0.917 11 C -0.177 4.177 12 N -0.547 5.547 13 Si 0.773 3.227 14 H -0.183 1.183 15 H -0.215 1.215 16 H -0.211 1.211 17 C -0.212 4.212 18 C -0.194 4.194 19 C -0.151 4.151 20 C -0.093 4.093 21 N -0.296 5.296 22 C -0.116 4.116 23 H 0.080 0.920 24 H 0.069 0.931 25 H 0.116 0.884 26 H 0.246 0.754 27 H 0.041 0.959 28 H 0.053 0.947 29 H 0.067 0.933 30 H 0.107 0.893 31 H 0.104 0.896 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.109 0.891 35 H 0.125 0.875 36 H 0.116 0.884 37 H 0.158 0.842 38 H 0.074 0.926 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -9.140 3.159 12.888 16.113 hybrid contribution 0.702 -0.474 -0.805 1.168 sum -8.438 2.685 12.083 14.980 Atomic orbital electron populations 1.21671 0.90779 1.02619 1.03885 1.21379 0.99080 1.00519 0.90599 0.87247 1.21396 0.76547 0.87542 0.85151 1.90620 1.56525 1.16553 1.84305 1.45980 1.66757 1.10944 1.11254 1.20502 0.96028 0.93567 0.84294 1.19098 0.94237 0.96795 0.89815 1.20714 0.91519 1.01475 1.40115 0.91691 1.25700 1.01421 0.96507 0.94061 1.70130 1.21863 1.22022 1.40691 0.85684 0.79790 0.79658 0.77604 1.18285 1.21492 1.21125 1.22998 0.94021 0.98281 1.05912 1.22385 1.02475 0.97235 0.97295 1.24107 0.95865 1.00166 0.94932 1.23788 0.91380 0.99734 0.94412 1.65050 1.28683 1.26906 1.08997 1.23592 0.96110 1.00790 0.91158 0.92005 0.93143 0.88429 0.75440 0.95933 0.94677 0.93298 0.89281 0.89590 0.91825 0.91398 0.89093 0.87497 0.88395 0.84159 0.92555 0.89775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.47 9.17 71.98 0.66 -1.81 16 2 C -0.09 -2.21 2.49 -11.54 -0.03 -2.24 16 3 H 0.11 2.18 7.87 -2.39 -0.02 2.16 16 4 C 0.51 17.72 6.30 87.66 0.55 18.27 16 5 O -0.60 -26.05 16.46 -3.04 -0.05 -26.10 16 6 N -0.70 -26.00 5.48 -463.06 -2.54 -28.54 16 7 C 0.18 8.21 5.51 86.38 0.48 8.69 16 8 C 0.00 0.06 1.46 -52.93 -0.08 -0.02 16 9 C -0.50 -25.38 8.62 25.60 0.22 -25.16 16 10 H 0.06 3.16 7.82 -2.91 -0.02 3.14 16 11 C 0.02 1.25 5.43 84.65 0.46 1.71 16 12 N -0.91 -51.69 12.65 21.45 0.27 -51.42 16 13 Si 0.95 42.30 29.54 68.60 2.03 44.33 16 14 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 15 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 16 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 17 C -0.18 -6.89 9.96 30.62 0.30 -6.58 16 18 C -0.16 -7.15 9.13 30.62 0.28 -6.87 16 19 C -0.13 -2.94 2.83 -10.14 -0.03 -2.97 16 20 C 0.04 0.61 8.46 86.41 0.73 1.34 16 21 N -0.67 -14.58 8.55 -524.13 -4.48 -19.07 16 22 C 0.01 0.37 7.91 86.41 0.68 1.05 16 23 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 24 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.41 13.55 8.30 -92.71 -0.77 12.78 16 27 H 0.02 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.03 1.59 8.09 -2.39 -0.02 1.57 16 29 H 0.26 14.16 8.32 -92.71 -0.77 13.39 16 30 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16 31 H 0.09 3.26 8.14 -2.39 -0.02 3.24 16 32 H 0.06 3.19 8.14 -2.39 -0.02 3.17 16 33 H 0.07 3.00 8.14 -2.38 -0.02 2.98 16 34 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.11 1.64 7.96 -2.39 -0.02 1.62 16 36 H 0.10 1.18 8.14 -2.38 -0.02 1.16 16 37 H 0.34 6.39 8.89 -89.69 -0.80 5.60 16 38 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 39 H 0.08 2.46 8.10 -2.38 -0.02 2.44 16 Total: -1.00 -64.19 326.19 -1.07 -65.26 By element: Atomic # 1 Polarization: 30.66 SS G_CDS: -0.53 Total: 30.13 kcal Atomic # 6 Polarization: -18.82 SS G_CDS: 4.23 Total: -14.58 kcal Atomic # 7 Polarization: -92.28 SS G_CDS: -6.75 Total: -99.03 kcal Atomic # 8 Polarization: -26.05 SS G_CDS: -0.05 Total: -26.10 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.33 kcal Total: -64.19 -1.07 -65.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404172201.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.714 kcal (2) G-P(sol) polarization free energy of solvation -64.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds