Wall clock time and date at job start Mon Mar 30 2020 21:13:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.46875 * 2 1 4 4 C 1.52999 * 109.47077 * 239.99867 * 2 1 3 5 5 C 1.50697 * 109.47171 * 170.57596 * 4 2 1 6 6 H 1.08006 * 119.99601 * 354.25001 * 5 4 2 7 7 C 1.37879 * 120.00334 * 174.25866 * 5 4 2 8 8 N 1.31516 * 119.99647 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00288 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.47004 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47128 * 119.99392 * 9 7 5 12 12 H 1.48496 * 109.47011 * 239.99820 * 9 7 5 13 13 N 1.46897 * 109.47044 * 119.99948 * 2 1 3 14 14 C 1.46909 * 110.99687 * 192.35667 * 13 2 1 15 15 C 1.52982 * 108.87700 * 54.31911 * 14 13 2 16 16 N 1.46010 * 109.95039 * 50.31691 * 15 14 13 17 17 C 1.46500 * 118.53626 * 161.89825 * 16 15 14 18 18 C 1.52995 * 117.50108 * 3.74848 * 17 16 15 19 19 C 1.52996 * 60.00398 * 252.51127 * 18 17 16 20 20 C 1.33713 * 122.92623 * 341.87680 * 16 15 14 21 21 O 1.21278 * 118.62403 * 181.71106 * 20 16 15 22 22 C 1.46910 * 111.00014 * 315.20064 * 13 2 1 23 23 H 1.09001 * 109.46835 * 186.46644 * 1 2 3 24 24 H 1.09002 * 109.47075 * 306.46318 * 1 2 3 25 25 H 1.09000 * 109.46949 * 66.46598 * 1 2 3 26 26 H 1.08997 * 109.46791 * 290.57327 * 4 2 1 27 27 H 1.09000 * 109.46998 * 50.57092 * 4 2 1 28 28 H 0.96995 * 119.99867 * 180.02562 * 8 7 5 29 29 H 1.08992 * 109.45480 * 294.53900 * 14 13 2 30 30 H 1.08999 * 109.58794 * 174.17788 * 14 13 2 31 31 H 1.09000 * 109.37767 * 290.19942 * 15 14 13 32 32 H 1.09004 * 109.37730 * 170.43130 * 15 14 13 33 33 H 1.09004 * 115.55007 * 149.46048 * 17 16 15 34 34 H 1.09008 * 117.50130 * 0.02562 * 18 17 16 35 35 H 1.08997 * 117.50492 * 145.02283 * 18 17 16 36 36 H 1.08996 * 117.50124 * 252.51386 * 19 18 17 37 37 H 1.09001 * 117.50245 * 107.48358 * 19 18 17 38 38 H 1.08993 * 109.38322 * 166.78043 * 22 13 2 39 39 H 1.08992 * 109.29881 * 47.03422 * 22 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5289 -0.5230 -1.3711 6 1 4.0440 0.1342 -0.6860 7 6 4.2336 -1.1804 -2.3572 8 7 3.6063 -1.9809 -3.1911 9 14 6.0790 -0.9341 -2.5087 10 1 6.5404 0.0091 -1.4585 11 1 6.7680 -2.2387 -2.3402 12 1 6.3956 -0.3764 -3.8480 13 7 2.0197 -0.6925 1.1994 14 6 3.4583 -0.4631 1.3892 15 6 3.7216 1.0438 1.4035 16 7 2.8116 1.6997 2.3381 17 6 3.1426 3.0472 2.8081 18 6 4.3844 3.7167 2.2162 19 6 4.4037 3.2086 3.6592 20 6 1.6893 1.1255 2.7838 21 8 0.9737 1.7539 3.5348 22 6 1.2776 -0.2659 2.3934 23 1 -0.3633 -1.0211 0.1157 24 1 -0.3633 0.6108 0.8265 25 1 -0.3633 0.4103 -0.9422 26 1 1.8206 -1.7859 -1.1690 27 1 1.5458 -0.3139 -2.1312 28 1 4.1021 -2.4437 -3.8846 29 1 4.0104 -0.9229 0.5697 30 1 3.7759 -0.8987 2.3366 31 1 3.5657 1.4477 0.4032 32 1 4.7509 1.2281 1.7115 33 1 2.2909 3.6851 3.0444 34 1 4.9551 3.1547 1.4767 35 1 4.3501 4.7952 2.0628 36 1 4.3818 3.9529 4.4552 37 1 4.9871 2.3122 3.8695 38 1 1.4901 -0.9499 3.2150 39 1 0.2093 -0.2801 2.1778 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411325427.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:13:03 Heat of formation + Delta-G solvation = -1.646611 kcal Electronic energy + Delta-G solvation = -20005.574847 eV Core-core repulsion = 17142.056046 eV Total energy + Delta-G solvation = -2863.518801 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.06375 -39.02836 -38.33620 -35.28386 -34.46082 -32.39743 -31.41891 -28.74235 -27.23486 -24.99172 -24.34545 -23.19514 -23.09505 -21.48541 -18.84389 -18.60514 -18.25727 -17.71919 -16.82655 -16.62023 -16.51755 -15.90112 -15.49730 -15.00710 -14.90325 -14.02344 -13.84188 -13.68852 -13.55772 -13.25012 -13.10155 -12.91792 -12.65388 -12.47473 -12.33694 -12.25543 -12.11561 -11.92659 -11.75775 -11.51468 -11.32272 -10.93202 -10.86851 -10.44599 -9.58503 -9.06255 -8.08297 -6.13207 1.45705 1.46330 1.48186 1.57297 1.81648 2.47885 2.85309 3.05261 3.26718 3.50705 3.70127 3.92358 3.96600 4.05024 4.09969 4.16206 4.26072 4.43875 4.47683 4.58578 4.66409 4.69243 4.77961 4.84494 4.98731 5.06425 5.14146 5.18667 5.25026 5.33080 5.45139 5.54001 5.62980 5.92996 6.14051 6.26130 6.32573 6.41422 6.98100 7.04410 7.50749 9.04223 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.020970 B = 0.008372 C = 0.006519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.943332 B = 3343.818711 C = 4294.111792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.085 3.915 3 H 0.032 0.968 4 C 0.038 3.962 5 C -0.522 4.522 6 H 0.088 0.912 7 C 0.003 3.997 8 N -0.934 5.934 9 Si 0.947 3.053 10 H -0.247 1.247 11 H -0.286 1.286 12 H -0.291 1.291 13 N -0.514 5.514 14 C 0.024 3.976 15 C 0.078 3.922 16 N -0.572 5.572 17 C 0.041 3.959 18 C -0.170 4.170 19 C -0.175 4.175 20 C 0.487 3.513 21 O -0.593 6.593 22 C 0.034 3.966 23 H 0.065 0.935 24 H 0.055 0.945 25 H 0.058 0.942 26 H 0.002 0.998 27 H -0.010 1.010 28 H 0.258 0.742 29 H 0.124 0.876 30 H 0.085 0.915 31 H 0.070 0.930 32 H 0.094 0.906 33 H 0.116 0.884 34 H 0.101 0.899 35 H 0.121 0.879 36 H 0.116 0.884 37 H 0.096 0.904 38 H 0.124 0.876 39 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.190 7.463 11.130 13.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.022 4.022 3 H 0.050 0.950 4 C 0.000 4.000 5 C -0.559 4.559 6 H 0.106 0.894 7 C -0.195 4.195 8 N -0.575 5.575 9 Si 0.773 3.227 10 H -0.171 1.171 11 H -0.212 1.212 12 H -0.218 1.218 13 N -0.237 5.237 14 C -0.104 4.104 15 C -0.045 4.045 16 N -0.303 5.303 17 C -0.063 4.063 18 C -0.208 4.208 19 C -0.214 4.214 20 C 0.276 3.724 21 O -0.474 6.474 22 C -0.097 4.097 23 H 0.084 0.916 24 H 0.074 0.926 25 H 0.077 0.923 26 H 0.021 0.979 27 H 0.008 0.992 28 H 0.067 0.933 29 H 0.141 0.859 30 H 0.103 0.897 31 H 0.088 0.912 32 H 0.112 0.888 33 H 0.133 0.867 34 H 0.120 0.880 35 H 0.139 0.861 36 H 0.134 0.866 37 H 0.115 0.885 38 H 0.141 0.859 39 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 1.760 7.130 11.278 13.459 hybrid contribution 0.875 0.686 -0.584 1.255 sum 2.635 7.815 10.695 13.506 Atomic orbital electron populations 1.21981 0.94768 1.02246 1.01385 1.21743 0.94451 0.95168 0.90866 0.94994 1.18988 0.95477 0.94953 0.90565 1.21937 0.93858 1.26030 1.14124 0.89406 1.25850 1.02563 0.95329 0.95724 1.70119 1.37459 1.30762 1.19193 0.85666 0.80723 0.78127 0.78234 1.17059 1.21215 1.21777 1.62458 1.03715 1.56313 1.01239 1.23031 0.89847 0.92666 1.04810 1.22274 0.94321 0.95323 0.92609 1.47087 1.22721 1.15838 1.44605 1.21769 0.93469 0.85557 1.05469 1.23437 0.98355 1.02075 0.96900 1.23396 0.99470 1.03754 0.94744 1.21748 0.80093 0.90803 0.79784 1.90625 1.52911 1.65132 1.38782 1.22740 1.01970 0.89769 0.95191 0.91568 0.92584 0.92302 0.97933 0.99201 0.93305 0.85892 0.89651 0.91212 0.88780 0.86651 0.88045 0.86082 0.86560 0.88548 0.85850 0.86295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.95 8.15 71.98 0.59 -4.36 16 2 C 0.09 3.31 1.90 44.92 0.09 3.39 16 3 H 0.03 1.29 5.49 -2.39 -0.01 1.27 16 4 C 0.04 1.83 4.63 29.85 0.14 1.97 16 5 C -0.52 -25.79 6.74 25.60 0.17 -25.62 16 6 H 0.09 3.89 3.64 -2.91 -0.01 3.88 16 7 C 0.00 0.15 5.46 84.65 0.46 0.61 16 8 N -0.93 -54.10 13.29 21.45 0.28 -53.81 16 9 Si 0.95 40.43 29.54 68.60 2.03 42.46 16 10 H -0.25 -9.46 7.11 99.48 0.71 -8.76 16 11 H -0.29 -12.26 7.11 99.48 0.71 -11.55 16 12 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 13 N -0.51 -17.91 4.89 -876.39 -4.28 -22.19 16 14 C 0.02 0.79 5.36 86.30 0.46 1.26 16 15 C 0.08 2.33 4.01 86.47 0.35 2.68 16 16 N -0.57 -17.43 3.03 -801.24 -2.43 -19.86 16 17 C 0.04 1.11 6.01 44.99 0.27 1.38 16 18 C -0.17 -3.49 9.69 30.59 0.30 -3.19 16 19 C -0.18 -3.58 10.21 30.59 0.31 -3.26 16 20 C 0.49 16.37 7.11 87.68 0.62 17.00 16 21 O -0.59 -23.09 16.50 -3.02 -0.05 -23.14 16 22 C 0.03 1.03 5.44 85.42 0.46 1.50 16 23 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 24 H 0.06 1.74 6.51 -2.39 -0.02 1.72 16 25 H 0.06 1.97 8.10 -2.39 -0.02 1.95 16 26 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 27 H -0.01 -0.55 8.08 -2.39 -0.02 -0.57 16 28 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 29 H 0.12 4.72 4.84 -2.39 -0.01 4.71 16 30 H 0.09 2.40 8.07 -2.39 -0.02 2.38 16 31 H 0.07 2.40 5.17 -2.39 -0.01 2.38 16 32 H 0.09 2.39 6.73 -2.38 -0.02 2.37 16 33 H 0.12 3.35 7.59 -2.38 -0.02 3.33 16 34 H 0.10 2.15 6.44 -2.38 -0.02 2.14 16 35 H 0.12 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.12 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.12 3.25 8.14 -2.39 -0.02 3.23 16 39 H 0.12 3.51 5.50 -2.39 -0.01 3.50 16 Total: -1.00 -62.39 296.59 0.82 -61.57 By element: Atomic # 1 Polarization: 20.59 SS G_CDS: 1.05 Total: 21.64 kcal Atomic # 6 Polarization: -10.88 SS G_CDS: 4.22 Total: -6.66 kcal Atomic # 7 Polarization: -89.43 SS G_CDS: -6.43 Total: -95.86 kcal Atomic # 8 Polarization: -23.09 SS G_CDS: -0.05 Total: -23.14 kcal Atomic # 14 Polarization: 40.43 SS G_CDS: 2.03 Total: 42.46 kcal Total: -62.39 0.82 -61.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411325427.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.921 kcal (2) G-P(sol) polarization free energy of solvation -62.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds