Wall clock time and date at job start Mon Mar 30 2020 21:13:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50701 * 119.99826 * 2 1 4 4 H 1.09001 * 109.47291 * 5.27780 * 3 2 1 5 5 C 1.53000 * 109.46860 * 125.27738 * 3 2 1 6 6 N 1.46499 * 109.47460 * 245.27423 * 3 2 1 7 7 C 1.34780 * 119.99773 * 155.00190 * 6 3 2 8 8 O 1.21583 * 120.00406 * 359.97438 * 7 6 3 9 9 N 1.34782 * 119.99572 * 180.02562 * 7 6 3 10 10 C 1.46500 * 119.99739 * 180.02562 * 9 7 6 11 11 H 1.09002 * 110.01430 * 325.05187 * 10 9 7 12 12 C 1.53868 * 110.03771 * 86.44545 * 10 9 7 13 13 C 1.54274 * 106.59776 * 119.28173 * 12 10 9 14 14 C 1.54895 * 104.19170 * 23.61469 * 13 12 10 15 15 H 1.08996 * 110.75508 * 80.55852 * 14 13 12 16 16 C 1.50695 * 110.75378 * 203.73958 * 14 13 12 17 17 H 1.08007 * 120.00158 * 118.54415 * 16 14 13 18 18 C 1.37884 * 119.99938 * 298.54961 * 16 14 13 19 19 N 1.31515 * 119.99615 * 179.97438 * 18 16 14 20 20 Si 1.86789 * 120.00038 * 359.97438 * 18 16 14 21 21 H 1.48497 * 109.47164 * 90.00313 * 20 18 16 22 22 H 1.48504 * 109.47114 * 210.00306 * 20 18 16 23 23 H 1.48495 * 109.47475 * 330.00092 * 20 18 16 24 24 C 1.54262 * 110.02966 * 203.61851 * 10 9 7 25 25 H 1.08002 * 120.00350 * 359.72370 * 1 2 3 26 26 H 1.07998 * 120.00195 * 179.72135 * 1 2 3 27 27 H 1.08002 * 120.00352 * 180.28242 * 2 1 3 28 28 H 1.09005 * 109.47394 * 180.02562 * 5 3 2 29 29 H 1.09007 * 109.47145 * 300.00092 * 5 3 2 30 30 H 1.09001 * 109.47134 * 59.99947 * 5 3 2 31 31 H 0.96995 * 119.99979 * 335.00298 * 6 3 2 32 32 H 0.96995 * 120.00180 * 359.97438 * 9 7 6 33 33 H 1.08994 * 110.03772 * 238.56868 * 12 10 9 34 34 H 1.09002 * 110.03343 * 0.02562 * 12 10 9 35 35 H 1.08999 * 110.48427 * 142.28874 * 13 12 10 36 36 H 1.08993 * 110.48826 * 264.93696 * 13 12 10 37 37 H 0.96998 * 119.99933 * 179.97438 * 19 18 16 38 38 H 1.09004 * 110.48531 * 335.77964 * 24 10 9 39 39 H 1.08999 * 110.48932 * 98.42613 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 1 1.3589 2.1314 0.0945 5 6 3.0399 1.3302 1.1776 6 7 2.8079 1.4393 -1.2545 7 6 3.1333 2.6625 -1.7176 8 8 2.8085 3.6547 -1.0944 9 7 3.8178 2.7859 -2.8720 10 6 4.1719 4.1155 -3.3751 11 1 3.3816 4.8273 -3.1365 12 6 5.5020 4.5770 -2.7542 13 6 6.4850 4.7874 -3.9245 14 6 5.5699 5.0374 -5.1489 15 1 5.2220 6.0702 -5.1667 16 6 6.2864 4.6953 -6.4297 17 1 5.9021 3.9168 -7.0722 18 6 7.4327 5.3761 -6.7814 19 7 8.0582 5.0772 -7.8990 20 14 8.0971 6.7228 -5.6706 21 1 9.0452 6.1338 -4.6911 22 1 8.8021 7.7393 -6.4922 23 1 6.9723 7.3661 -4.9453 24 6 4.3929 4.0615 -4.9008 25 1 -0.5401 0.9353 0.0045 26 1 -0.5400 -0.9353 -0.0045 27 1 1.8500 -0.9353 -0.0046 28 1 3.5846 2.2744 1.1780 29 1 2.4859 1.2304 2.1111 30 1 3.7444 0.5039 1.0831 31 1 3.0667 0.6478 -1.7519 32 1 4.0766 1.9944 -3.3694 33 1 5.3575 5.5132 -2.2151 34 1 5.8843 3.8116 -2.0789 35 1 7.1191 5.6543 -3.7388 36 1 7.0921 3.8952 -4.0778 37 1 8.8644 5.5564 -8.1466 38 1 4.6622 3.0521 -5.2118 39 1 3.5003 4.3988 -5.4278 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000454673335.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:13:09 Heat of formation + Delta-G solvation = -22.905329 kcal Electronic energy + Delta-G solvation = -18557.151582 eV Core-core repulsion = 15692.710934 eV Total energy + Delta-G solvation = -2864.440648 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.04143 -37.75973 -36.26920 -33.72093 -32.77922 -31.92064 -29.78185 -28.41878 -27.37264 -23.93186 -23.23686 -20.91115 -20.47814 -19.71796 -19.35511 -17.94282 -17.01291 -16.41591 -15.36154 -15.15391 -14.81230 -14.43505 -14.27492 -13.88649 -13.65019 -12.80890 -12.72393 -12.52677 -12.38726 -12.35072 -11.93016 -11.58111 -11.11910 -11.00984 -10.94314 -10.45888 -10.18380 -10.02654 -9.94663 -9.75843 -9.71735 -9.43654 -9.16598 -9.00888 -8.57516 -8.50717 -6.07015 -4.05994 1.78034 2.99805 3.30961 3.39711 3.40506 3.42887 4.42098 4.43618 4.45144 4.79748 5.13733 5.20660 5.22692 5.35333 5.45439 5.49685 5.54060 5.63581 5.78585 6.01268 6.15131 6.18473 6.22298 6.32743 6.34398 6.47473 6.53018 6.56306 6.59996 6.73935 6.86607 6.98396 7.09417 7.20987 7.54113 7.77372 8.19689 8.52250 8.79152 8.96083 9.56308 11.06215 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.048642 B = 0.004119 C = 0.003968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.500267 B = 6795.765749 C = 7054.108317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.169 4.169 3 C 0.188 3.812 4 H 0.089 0.911 5 C -0.161 4.161 6 N -0.745 5.745 7 C 0.702 3.298 8 O -0.595 6.595 9 N -0.734 5.734 10 C 0.156 3.844 11 H 0.082 0.918 12 C -0.131 4.131 13 C -0.130 4.130 14 C 0.015 3.985 15 H 0.035 0.965 16 C -0.510 4.510 17 H 0.073 0.927 18 C 0.070 3.930 19 N -0.903 5.903 20 Si 0.883 3.117 21 H -0.279 1.279 22 H -0.296 1.296 23 H -0.264 1.264 24 C -0.109 4.109 25 H 0.099 0.901 26 H 0.102 0.898 27 H 0.113 0.887 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.394 0.606 32 H 0.394 0.606 33 H 0.058 0.942 34 H 0.056 0.944 35 H 0.045 0.955 36 H 0.066 0.934 37 H 0.263 0.737 38 H 0.067 0.933 39 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.180 -10.123 15.096 21.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.188 4.188 3 C 0.083 3.917 4 H 0.107 0.893 5 C -0.219 4.219 6 N -0.401 5.401 7 C 0.402 3.598 8 O -0.474 6.474 9 N -0.388 5.388 10 C 0.051 3.949 11 H 0.100 0.900 12 C -0.170 4.170 13 C -0.168 4.168 14 C -0.005 4.005 15 H 0.053 0.947 16 C -0.548 4.548 17 H 0.091 0.909 18 C -0.131 4.131 19 N -0.541 5.541 20 Si 0.712 3.288 21 H -0.205 1.205 22 H -0.223 1.223 23 H -0.189 1.189 24 C -0.148 4.148 25 H 0.118 0.882 26 H 0.120 0.880 27 H 0.131 0.869 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.228 0.772 32 H 0.228 0.772 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.064 0.936 36 H 0.085 0.915 37 H 0.073 0.927 38 H 0.086 0.914 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.323 -9.125 15.552 21.292 hybrid contribution 0.843 -0.143 0.107 0.862 sum -10.481 -9.268 15.660 20.999 Atomic orbital electron populations 1.23983 0.95868 1.02274 0.98309 1.23069 0.96148 0.97998 1.01562 1.19828 0.92978 0.95629 0.83270 0.89280 1.22171 0.99593 1.02702 0.97475 1.45226 1.61867 1.06946 1.26056 1.16036 0.78828 0.83509 0.81425 1.90892 1.60312 1.36532 1.59631 1.45507 1.59608 1.10041 1.23654 1.21698 0.96547 0.82042 0.94570 0.89960 1.22568 0.95665 1.00456 0.98280 1.22821 0.97899 1.00659 0.95449 1.20061 0.91676 0.94933 0.93798 0.94700 1.20980 1.09006 1.20607 1.04194 0.90856 1.24993 0.96569 0.96653 0.94885 1.69903 1.19034 1.41956 1.23243 0.86890 0.79385 0.82184 0.80342 1.20477 1.22319 1.18905 1.22571 0.99599 1.01386 0.91199 0.88222 0.88020 0.86892 0.91647 0.91822 0.92527 0.77229 0.77168 0.92307 0.92540 0.93632 0.91539 0.92706 0.91415 0.92206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.17 14.32 29.02 0.42 -0.76 16 2 C -0.17 -1.29 8.96 -36.02 -0.32 -1.61 16 3 C 0.19 1.91 2.93 -69.08 -0.20 1.71 16 4 H 0.09 1.08 7.23 -51.93 -0.38 0.70 16 5 C -0.16 -1.56 9.47 37.16 0.35 -1.21 16 6 N -0.75 -8.29 5.07 -59.81 -0.30 -8.59 16 7 C 0.70 10.63 8.52 -86.91 -0.74 9.89 16 8 O -0.60 -11.33 15.68 5.29 0.08 -11.25 16 9 N -0.73 -10.68 5.00 -57.58 -0.29 -10.96 16 10 C 0.16 2.70 3.23 -66.82 -0.22 2.48 16 11 H 0.08 1.51 7.60 -51.93 -0.39 1.11 16 12 C -0.13 -2.39 6.59 -25.61 -0.17 -2.56 16 13 C -0.13 -2.76 5.08 -25.06 -0.13 -2.89 16 14 C 0.01 0.33 2.30 -89.78 -0.21 0.13 16 15 H 0.03 0.82 7.37 -51.93 -0.38 0.44 16 16 C -0.51 -13.96 9.12 -34.44 -0.31 -14.27 16 17 H 0.07 2.16 8.03 -52.48 -0.42 1.73 16 18 C 0.07 2.01 5.46 -17.82 -0.10 1.91 16 19 N -0.90 -27.40 13.96 55.43 0.77 -26.63 16 20 Si 0.88 21.84 24.46 -169.99 -4.16 17.68 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.30 -7.36 7.11 56.52 0.40 -6.96 16 23 H -0.26 -6.29 6.48 56.52 0.37 -5.92 16 24 C -0.11 -2.06 5.94 -25.07 -0.15 -2.20 16 25 H 0.10 0.73 7.84 -52.49 -0.41 0.32 16 26 H 0.10 0.55 8.06 -52.49 -0.42 0.13 16 27 H 0.11 0.70 8.06 -52.49 -0.42 0.28 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.39 3.35 8.61 -40.82 -0.35 3.00 16 32 H 0.39 4.77 8.36 -40.82 -0.34 4.43 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.06 0.99 7.92 -51.93 -0.41 0.58 16 35 H 0.05 0.99 4.91 -51.93 -0.25 0.74 16 36 H 0.07 1.44 8.04 -51.93 -0.42 1.02 16 37 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 38 H 0.07 1.24 7.63 -51.93 -0.40 0.85 16 39 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 315.42 15.07 4.75 4.75 Total: -1.00 -32.05 315.42 -7.20 -39.25 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -6.29 Total: 5.14 kcal Atomic # 6 Polarization: -7.61 SS G_CDS: -1.78 Total: -9.39 kcal Atomic # 7 Polarization: -46.37 SS G_CDS: 0.18 Total: -46.19 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: 0.08 Total: -11.25 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.16 Total: 17.68 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.05 -7.20 -39.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000454673335.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.345 kcal (2) G-P(sol) polarization free energy of solvation -32.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds