Wall clock time and date at job start Mon Mar 30 2020 21:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.49430 * 110.99831 * 2 1 4 4 C 1.51150 * 105.21797 * 245.41357 * 3 2 1 5 5 H 1.09002 * 111.29229 * 84.97359 * 4 3 2 6 6 C 1.52052 * 122.57194 * 220.35536 * 4 3 2 7 7 C 1.56299 * 100.79758 * 149.82949 * 6 4 3 8 8 N 1.49459 * 106.37647 * 336.41854 * 7 6 4 9 9 C 1.34778 * 127.15076 * 171.04607 * 8 7 6 10 10 O 1.21284 * 119.99943 * 179.97438 * 9 8 7 11 11 C 1.50695 * 120.00131 * 359.94164 * 9 8 7 12 12 C 1.52999 * 109.47559 * 180.02562 * 11 9 8 13 13 C 1.50695 * 109.47559 * 180.02562 * 12 11 9 14 14 H 1.07999 * 119.99954 * 359.97438 * 13 12 11 15 15 C 1.37876 * 120.00019 * 179.97438 * 13 12 11 16 16 N 1.31515 * 120.00127 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99907 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47337 * 59.99451 * 17 15 13 19 19 H 1.48493 * 109.47014 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.46719 * 299.99880 * 17 15 13 21 21 C 1.42335 * 105.69545 * 351.00032 * 8 7 6 22 22 H 1.09001 * 107.58679 * 284.81497 * 21 8 7 23 23 C 1.50065 * 110.99867 * 240.10709 * 2 1 3 24 24 H 1.08995 * 109.47263 * 60.00074 * 1 2 3 25 25 H 1.09002 * 109.46817 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46858 * 299.99425 * 1 2 3 27 27 H 1.09002 * 110.29183 * 126.47977 * 3 2 1 28 28 H 1.08999 * 110.28990 * 4.34826 * 3 2 1 29 29 H 1.09002 * 111.15926 * 267.72644 * 6 4 3 30 30 H 1.08995 * 111.16103 * 31.93282 * 6 4 3 31 31 H 1.09001 * 110.06310 * 95.62565 * 7 6 4 32 32 H 1.08999 * 110.06590 * 217.14818 * 7 6 4 33 33 H 1.09004 * 109.47362 * 300.00419 * 11 9 8 34 34 H 1.09000 * 109.47081 * 59.99988 * 11 9 8 35 35 H 1.09004 * 109.46764 * 300.00342 * 12 11 9 36 36 H 1.09000 * 109.47295 * 59.99676 * 12 11 9 37 37 H 0.97000 * 119.99913 * 180.02562 * 16 15 13 38 38 H 1.09002 * 110.83405 * 264.39049 * 23 2 1 39 39 H 1.09008 * 110.82983 * 27.77151 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 2.0045 1.3951 0.0000 4 6 2.7132 1.5480 -1.3263 5 1 2.0182 1.8341 -2.1157 6 6 4.0395 2.2784 -1.4662 7 6 4.6712 1.5098 -2.6718 8 7 4.0186 0.1656 -2.7031 9 6 4.1272 -0.7696 -3.6675 10 8 3.5369 -1.8236 -3.5594 11 6 4.9816 -0.5055 -4.8805 12 6 4.9323 -1.7176 -5.8128 13 6 5.7872 -1.4537 -7.0255 14 1 6.3127 -0.5152 -7.1218 15 6 5.8984 -2.4105 -8.0119 16 7 5.2589 -3.5537 -7.8944 17 14 6.9586 -2.0837 -9.5148 18 1 8.3607 -1.8430 -9.0887 19 1 6.9117 -3.2606 -10.4191 20 1 6.4468 -0.8877 -10.2310 21 6 3.2594 0.0781 -1.5024 22 1 3.9574 -0.0946 -0.6832 23 6 2.0068 -0.6982 -1.2146 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 2.7075 1.5302 0.8221 28 1 1.1883 2.1132 0.0775 29 1 3.8859 3.3303 -1.7071 30 1 4.6464 2.1677 -0.5676 31 1 4.4724 2.0437 -3.6011 32 1 5.7457 1.4015 -2.5246 33 1 4.6051 0.3722 -5.4060 34 1 6.0108 -0.3283 -4.5684 35 1 5.3086 -2.5955 -5.2875 36 1 3.9031 -1.8944 -6.1249 37 1 5.3374 -4.2270 -8.5883 38 1 2.2387 -1.7398 -0.9921 39 1 1.3041 -0.6280 -2.0450 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590046960.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:13:11 Heat of formation + Delta-G solvation = -12.225429 kcal Electronic energy + Delta-G solvation = -18896.577818 eV Core-core repulsion = 16032.600285 eV Total energy + Delta-G solvation = -2863.977533 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.94435 -38.35119 -36.08208 -33.46285 -31.96434 -31.01633 -30.07893 -27.96891 -25.94259 -25.12973 -23.09961 -21.84596 -20.75849 -20.50530 -18.27979 -16.98562 -16.76162 -15.78134 -15.42199 -15.21053 -14.62665 -14.44083 -14.15053 -14.02749 -13.50926 -13.35166 -12.73748 -12.58056 -12.28321 -12.13257 -11.94731 -11.74606 -11.57573 -11.24759 -11.07400 -10.97781 -10.90444 -10.63164 -10.44903 -9.94671 -9.65832 -9.18347 -9.02045 -8.58457 -8.38210 -8.30013 -5.95469 -4.00106 3.04585 3.19682 3.34598 3.39312 3.41034 3.73636 3.97909 4.46720 4.56965 4.59221 4.81310 5.00350 5.07218 5.17598 5.25966 5.27876 5.36288 5.39040 5.39321 5.52794 5.62153 5.66380 5.69168 5.77583 5.89189 6.01844 6.10300 6.22079 6.24001 6.45807 6.67180 6.78456 6.94395 7.74326 7.85277 7.86386 8.07557 8.38795 8.74720 9.08014 9.63321 11.15475 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.041047 B = 0.004351 C = 0.004024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.973613 B = 6434.163436 C = 6956.807735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.529 5.529 3 C 0.054 3.946 4 C -0.152 4.152 5 H 0.084 0.916 6 C -0.111 4.111 7 C 0.108 3.892 8 N -0.615 5.615 9 C 0.526 3.474 10 O -0.527 6.527 11 C -0.124 4.124 12 C 0.037 3.963 13 C -0.528 4.528 14 H 0.055 0.945 15 C 0.059 3.941 16 N -0.890 5.890 17 Si 0.893 3.107 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 C 0.119 3.881 22 H 0.066 0.934 23 C 0.059 3.941 24 H 0.027 0.973 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.083 0.917 28 H 0.063 0.937 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.024 0.976 36 H 0.023 0.977 37 H 0.261 0.739 38 H 0.093 0.907 39 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.435 13.759 15.834 21.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.254 5.254 3 C -0.074 4.074 4 C -0.172 4.172 5 H 0.102 0.898 6 C -0.149 4.149 7 C -0.015 4.015 8 N -0.351 5.351 9 C 0.317 3.683 10 O -0.402 6.402 11 C -0.163 4.163 12 C 0.000 4.000 13 C -0.566 4.566 14 H 0.073 0.927 15 C -0.143 4.143 16 N -0.528 5.528 17 Si 0.721 3.279 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.203 1.203 21 C 0.012 3.988 22 H 0.083 0.917 23 C -0.068 4.068 24 H 0.046 0.954 25 H 0.089 0.911 26 H 0.087 0.913 27 H 0.101 0.899 28 H 0.082 0.918 29 H 0.100 0.900 30 H 0.098 0.902 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.042 0.958 36 H 0.041 0.959 37 H 0.071 0.929 38 H 0.111 0.889 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.626 12.628 16.174 21.277 hybrid contribution 0.259 0.623 -1.615 1.750 sum -5.367 13.251 14.560 20.405 Atomic orbital electron populations 1.22537 0.87592 1.02396 1.00472 1.65093 1.08298 1.13500 1.38503 1.22297 0.98992 0.89701 0.96369 1.23087 0.97337 0.97787 0.99031 0.89756 1.22228 0.95168 0.99127 0.98416 1.22877 0.97475 0.82120 0.98980 1.47900 1.48949 1.17531 1.20765 1.21384 0.81567 0.82103 0.83219 1.90679 1.46763 1.24803 1.77945 1.21840 0.97898 1.03753 0.92852 1.18907 0.97937 0.90933 0.92269 1.21173 1.29219 1.01776 1.04447 0.92673 1.25020 0.95837 0.95112 0.98353 1.69990 1.42255 1.06337 1.34239 0.86649 0.80903 0.77621 0.82737 1.20235 1.21265 1.20259 1.21042 0.94379 0.94879 0.88503 0.91662 1.22227 0.94568 0.98923 0.91106 0.95443 0.91087 0.91256 0.89880 0.91810 0.90010 0.90154 0.90510 0.90683 0.90393 0.90286 0.95784 0.95867 0.92884 0.88871 0.92563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.22 60.07 0.55 0.74 16 2 N -0.53 -6.12 5.57 -240.76 -1.34 -7.46 16 3 C 0.05 0.51 6.61 -3.34 -0.02 0.49 16 4 C -0.15 -1.58 3.32 -89.41 -0.30 -1.87 16 5 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 6 C -0.11 -0.93 6.67 -25.44 -0.17 -1.10 16 7 C 0.11 1.19 6.75 -0.63 0.00 1.19 16 8 N -0.61 -9.57 3.20 -163.19 -0.52 -10.10 16 9 C 0.53 10.68 7.88 -10.99 -0.09 10.59 16 10 O -0.53 -12.80 15.81 5.55 0.09 -12.71 16 11 C -0.12 -2.59 4.95 -27.89 -0.14 -2.73 16 12 C 0.04 1.01 4.26 -27.89 -0.12 0.90 16 13 C -0.53 -15.11 9.11 -34.44 -0.31 -15.42 16 14 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 15 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 16 N -0.89 -27.63 13.29 55.43 0.74 -26.90 16 17 Si 0.89 21.76 29.54 -169.99 -5.02 16.73 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 C 0.12 1.65 2.91 -68.91 -0.20 1.45 16 22 H 0.07 0.91 7.92 -51.93 -0.41 0.50 16 23 C 0.06 0.84 5.94 -3.47 -0.02 0.82 16 24 H 0.03 0.26 8.11 -51.93 -0.42 -0.16 16 25 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.51 7.64 -51.93 -0.40 0.12 16 29 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 34 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 35 H 0.02 0.72 8.10 -51.93 -0.42 0.29 16 36 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 37 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 38 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 39 H 0.06 0.86 7.85 -51.92 -0.41 0.45 16 LS Contribution 315.15 15.07 4.75 4.75 Total: -1.00 -33.78 315.15 -8.89 -42.67 By element: Atomic # 1 Polarization: 3.03 SS G_CDS: -6.67 Total: -3.64 kcal Atomic # 6 Polarization: -2.43 SS G_CDS: -0.91 Total: -3.35 kcal Atomic # 7 Polarization: -43.33 SS G_CDS: -1.13 Total: -44.45 kcal Atomic # 8 Polarization: -12.80 SS G_CDS: 0.09 Total: -12.71 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -33.78 -8.89 -42.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590046960.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.446 kcal (2) G-P(sol) polarization free energy of solvation -33.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds