Wall clock time and date at job start Mon Mar 30 2020 21:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.49430 * 110.99831 * 2 1 4 4 C 1.51150 * 105.21797 * 245.41357 * 3 2 1 5 5 H 1.09002 * 111.29229 * 84.97359 * 4 3 2 6 6 C 1.52052 * 122.57194 * 220.35536 * 4 3 2 7 7 C 1.56299 * 100.79758 * 149.82949 * 6 4 3 8 8 N 1.49459 * 106.37647 * 336.41854 * 7 6 4 9 9 C 1.34778 * 127.15076 * 171.04607 * 8 7 6 10 10 O 1.21284 * 119.99943 * 179.97438 * 9 8 7 11 11 C 1.50695 * 120.00131 * 359.94164 * 9 8 7 12 12 C 1.52999 * 109.47559 * 180.02562 * 11 9 8 13 13 C 1.50695 * 109.47559 * 180.02562 * 12 11 9 14 14 H 1.07999 * 119.99954 * 359.97438 * 13 12 11 15 15 C 1.37876 * 120.00019 * 179.97438 * 13 12 11 16 16 N 1.31515 * 120.00127 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99907 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47337 * 59.99451 * 17 15 13 19 19 H 1.48493 * 109.47014 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.46719 * 299.99880 * 17 15 13 21 21 C 1.42335 * 105.69545 * 351.00032 * 8 7 6 22 22 H 1.09001 * 107.58679 * 284.81497 * 21 8 7 23 23 C 1.50065 * 110.99867 * 240.10709 * 2 1 3 24 24 H 1.08995 * 109.47263 * 60.00074 * 1 2 3 25 25 H 1.09002 * 109.46817 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46858 * 299.99425 * 1 2 3 27 27 H 1.09002 * 110.29183 * 126.47977 * 3 2 1 28 28 H 1.08999 * 110.28990 * 4.34826 * 3 2 1 29 29 H 1.09002 * 111.15926 * 267.72644 * 6 4 3 30 30 H 1.08995 * 111.16103 * 31.93282 * 6 4 3 31 31 H 1.09001 * 110.06310 * 95.62565 * 7 6 4 32 32 H 1.08999 * 110.06590 * 217.14818 * 7 6 4 33 33 H 1.09004 * 109.47362 * 300.00419 * 11 9 8 34 34 H 1.09000 * 109.47081 * 59.99988 * 11 9 8 35 35 H 1.09004 * 109.46764 * 300.00342 * 12 11 9 36 36 H 1.09000 * 109.47295 * 59.99676 * 12 11 9 37 37 H 0.97000 * 119.99913 * 180.02562 * 16 15 13 38 38 H 1.09002 * 110.83405 * 264.39049 * 23 2 1 39 39 H 1.09008 * 110.82983 * 27.77151 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 2.0045 1.3951 0.0000 4 6 2.7132 1.5480 -1.3263 5 1 2.0182 1.8341 -2.1157 6 6 4.0395 2.2784 -1.4662 7 6 4.6712 1.5098 -2.6718 8 7 4.0186 0.1656 -2.7031 9 6 4.1272 -0.7696 -3.6675 10 8 3.5369 -1.8236 -3.5594 11 6 4.9816 -0.5055 -4.8805 12 6 4.9323 -1.7176 -5.8128 13 6 5.7872 -1.4537 -7.0255 14 1 6.3127 -0.5152 -7.1218 15 6 5.8984 -2.4105 -8.0119 16 7 5.2589 -3.5537 -7.8944 17 14 6.9586 -2.0837 -9.5148 18 1 8.3607 -1.8430 -9.0887 19 1 6.9117 -3.2606 -10.4191 20 1 6.4468 -0.8877 -10.2310 21 6 3.2594 0.0781 -1.5024 22 1 3.9574 -0.0946 -0.6832 23 6 2.0068 -0.6982 -1.2146 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 2.7075 1.5302 0.8221 28 1 1.1883 2.1132 0.0775 29 1 3.8859 3.3303 -1.7071 30 1 4.6464 2.1677 -0.5676 31 1 4.4724 2.0437 -3.6011 32 1 5.7457 1.4015 -2.5246 33 1 4.6051 0.3722 -5.4060 34 1 6.0108 -0.3283 -4.5684 35 1 5.3086 -2.5955 -5.2875 36 1 3.9031 -1.8944 -6.1249 37 1 5.3374 -4.2270 -8.5883 38 1 2.2387 -1.7398 -0.9921 39 1 1.3041 -0.6280 -2.0450 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590046960.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:13:11 Heat of formation + Delta-G solvation = -36.776009 kcal Electronic energy + Delta-G solvation = -18897.642411 eV Core-core repulsion = 16032.600285 eV Total energy + Delta-G solvation = -2865.042126 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.02719 -39.80379 -37.16615 -35.59831 -33.32095 -32.68750 -31.11992 -29.03348 -27.71168 -26.16608 -24.60189 -22.99283 -22.26431 -21.39250 -19.71949 -18.65248 -18.02225 -17.43235 -16.75847 -16.47901 -16.20801 -15.85816 -15.37151 -14.98055 -14.69998 -14.38856 -14.14696 -14.07773 -13.77183 -13.38957 -13.19733 -12.94464 -12.79300 -12.64400 -12.52313 -12.51503 -11.99247 -11.93108 -11.80023 -11.65502 -11.39755 -11.34121 -10.73006 -10.57384 -9.63034 -9.48511 -8.18997 -6.33874 1.41437 1.46407 1.54202 1.61919 1.86972 2.42194 2.83992 2.95879 3.13795 3.62548 3.76189 3.89786 3.98630 4.12549 4.29357 4.30542 4.39654 4.42037 4.47758 4.50424 4.56643 4.69112 4.75182 4.85640 4.92887 4.94968 4.97210 5.03227 5.14918 5.27349 5.42016 5.48417 5.58963 5.69724 5.82438 5.93330 6.15085 6.48085 6.84264 7.22236 7.36688 8.93671 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.041047 B = 0.004351 C = 0.004024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.973613 B = 6434.163436 C = 6956.807735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.536 5.536 3 C 0.055 3.945 4 C -0.132 4.132 5 H 0.076 0.924 6 C -0.096 4.096 7 C 0.094 3.906 8 N -0.609 5.609 9 C 0.521 3.479 10 O -0.586 6.586 11 C -0.109 4.109 12 C 0.043 3.957 13 C -0.545 4.545 14 H 0.077 0.923 15 C -0.007 4.007 16 N -0.938 5.938 17 Si 0.976 3.024 18 H -0.261 1.261 19 H -0.288 1.288 20 H -0.261 1.261 21 C 0.095 3.905 22 H 0.070 0.930 23 C 0.061 3.939 24 H 0.027 0.973 25 H 0.063 0.937 26 H 0.094 0.906 27 H 0.099 0.901 28 H 0.085 0.915 29 H 0.113 0.887 30 H 0.097 0.903 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.101 0.899 34 H 0.102 0.898 35 H -0.019 1.019 36 H -0.020 1.020 37 H 0.263 0.737 38 H 0.064 0.936 39 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.242 17.505 16.477 24.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.261 5.261 3 C -0.071 4.071 4 C -0.152 4.152 5 H 0.094 0.906 6 C -0.134 4.134 7 C -0.026 4.026 8 N -0.343 5.343 9 C 0.312 3.688 10 O -0.465 6.465 11 C -0.149 4.149 12 C 0.006 3.994 13 C -0.582 4.582 14 H 0.095 0.905 15 C -0.204 4.204 16 N -0.578 5.578 17 Si 0.799 3.201 18 H -0.186 1.186 19 H -0.213 1.213 20 H -0.186 1.186 21 C -0.011 4.011 22 H 0.087 0.913 23 C -0.067 4.067 24 H 0.045 0.955 25 H 0.082 0.918 26 H 0.112 0.888 27 H 0.117 0.883 28 H 0.104 0.896 29 H 0.131 0.869 30 H 0.116 0.884 31 H 0.106 0.894 32 H 0.109 0.891 33 H 0.119 0.881 34 H 0.120 0.880 35 H -0.001 1.001 36 H -0.001 1.001 37 H 0.072 0.928 38 H 0.083 0.917 39 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -4.422 16.461 16.864 23.977 hybrid contribution -0.166 -0.542 -1.723 1.814 sum -4.588 15.918 15.140 22.443 Atomic orbital electron populations 1.22610 0.86467 1.02445 1.01573 1.65071 1.09465 1.15050 1.36520 1.22430 0.99917 0.88594 0.96204 1.23065 0.98142 0.94727 0.99268 0.90606 1.22270 0.93351 0.99988 0.97777 1.23326 0.98344 0.79810 1.01126 1.47833 1.48397 1.18255 1.19772 1.21174 0.81251 0.82263 0.84118 1.90655 1.49117 1.27417 1.79347 1.21566 0.99698 1.01248 0.92359 1.18682 0.94995 0.92341 0.93396 1.21664 1.29230 1.02643 1.04709 0.90497 1.26164 0.97275 0.94613 1.02354 1.70181 1.44229 1.07739 1.35684 0.85344 0.79144 0.77780 0.77797 1.18581 1.21322 1.18581 1.21279 0.94312 0.98018 0.87530 0.91262 1.22045 0.94831 0.98225 0.91603 0.95482 0.91801 0.88780 0.88273 0.89617 0.86887 0.88438 0.89389 0.89132 0.88073 0.87976 1.00085 1.00138 0.92826 0.91714 0.94720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.22 127.69 1.18 1.50 16 2 N -0.54 -11.89 5.57 -915.64 -5.10 -16.99 16 3 C 0.06 0.87 6.61 85.21 0.56 1.43 16 4 C -0.13 -2.36 3.32 -10.01 -0.03 -2.39 16 5 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 6 C -0.10 -1.17 6.67 31.43 0.21 -0.97 16 7 C 0.09 1.78 6.75 86.95 0.59 2.36 16 8 N -0.61 -18.61 3.20 -788.61 -2.53 -21.13 16 9 C 0.52 21.85 7.88 87.66 0.69 22.54 16 10 O -0.59 -30.60 15.81 -3.04 -0.05 -30.65 16 11 C -0.11 -4.60 4.95 29.85 0.15 -4.45 16 12 C 0.04 2.50 4.26 29.85 0.13 2.63 16 13 C -0.54 -31.49 9.11 25.60 0.23 -31.26 16 14 H 0.08 4.01 7.74 -2.91 -0.02 3.99 16 15 C -0.01 -0.39 5.46 84.65 0.46 0.07 16 16 N -0.94 -60.45 13.29 21.45 0.28 -60.17 16 17 Si 0.98 44.56 29.54 68.60 2.03 46.58 16 18 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 19 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 20 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 21 C 0.10 2.60 2.91 46.54 0.14 2.73 16 22 H 0.07 1.86 7.92 -2.39 -0.02 1.84 16 23 C 0.06 1.81 5.94 84.76 0.50 2.31 16 24 H 0.03 0.49 8.11 -2.39 -0.02 0.47 16 25 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.09 1.03 7.64 -2.39 -0.02 1.01 16 29 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.10 3.76 8.14 -2.38 -0.02 3.74 16 34 H 0.10 3.80 8.14 -2.39 -0.02 3.78 16 35 H -0.02 -1.25 8.10 -2.38 -0.02 -1.27 16 36 H -0.02 -1.29 8.10 -2.39 -0.02 -1.31 16 37 H 0.26 15.87 8.31 -92.71 -0.77 15.10 16 38 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 39 H 0.03 1.14 7.85 -2.38 -0.02 1.12 16 Total: -1.00 -79.07 315.15 0.44 -78.62 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: 1.00 Total: 7.23 kcal Atomic # 6 Polarization: -8.29 SS G_CDS: 4.80 Total: -3.49 kcal Atomic # 7 Polarization: -90.95 SS G_CDS: -7.34 Total: -98.29 kcal Atomic # 8 Polarization: -30.60 SS G_CDS: -0.05 Total: -30.65 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.58 kcal Total: -79.07 0.44 -78.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590046960.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.848 kcal (2) G-P(sol) polarization free energy of solvation -79.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds