Wall clock time and date at job start Mon Mar 30 2020 21:13:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46833 * 2 1 4 4 C 1.50697 * 109.47160 * 119.99915 * 2 1 3 5 5 H 1.07995 * 120.00015 * 120.00496 * 4 2 1 6 6 C 1.37882 * 120.00083 * 300.00099 * 4 2 1 7 7 N 1.31514 * 119.99947 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 119.99990 * 180.02562 * 6 4 2 9 9 H 1.48510 * 109.47235 * 90.00168 * 8 6 4 10 10 H 1.48503 * 109.46954 * 209.99685 * 8 6 4 11 11 H 1.48490 * 109.47238 * 330.00021 * 8 6 4 12 12 C 1.50699 * 109.47300 * 240.00008 * 2 1 3 13 13 O 1.21274 * 120.00151 * 239.99961 * 12 2 1 14 14 N 1.34783 * 119.99868 * 59.71843 * 12 2 1 15 15 C 1.46503 * 119.99748 * 180.27488 * 14 12 2 16 16 H 1.08996 * 110.27121 * 327.09322 * 15 14 12 17 17 C 1.54599 * 110.30382 * 89.28820 * 15 14 12 18 18 C 1.54938 * 102.91878 * 96.95921 * 17 15 14 19 19 N 1.48531 * 103.23090 * 37.40983 * 18 17 15 20 20 C 1.46898 * 111.00276 * 200.27802 * 19 18 17 21 21 C 1.53000 * 117.49878 * 255.25766 * 20 19 18 22 22 C 1.53000 * 117.49643 * 186.63322 * 20 19 18 23 23 C 1.47910 * 105.81978 * 320.79711 * 19 18 17 24 24 H 1.08997 * 109.47480 * 60.00375 * 1 2 3 25 25 H 1.08999 * 109.46833 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46988 * 300.00059 * 1 2 3 27 27 H 0.96993 * 120.00219 * 179.97438 * 7 6 4 28 28 H 0.96993 * 120.00049 * 0.28045 * 14 12 2 29 29 H 1.08997 * 110.72111 * 215.31465 * 17 15 14 30 30 H 1.08995 * 110.72506 * 338.59655 * 17 15 14 31 31 H 1.08996 * 110.66718 * 278.97192 * 18 17 15 32 32 H 1.09004 * 110.80966 * 155.91411 * 18 17 15 33 33 H 1.08998 * 115.54895 * 40.96902 * 20 19 18 34 34 H 1.08995 * 117.49936 * 359.97438 * 21 20 19 35 35 H 1.08999 * 117.49512 * 145.01779 * 21 20 19 36 36 H 1.09004 * 117.49526 * 214.97492 * 22 20 19 37 37 H 1.08993 * 117.50146 * 0.02562 * 22 20 19 38 38 H 1.09003 * 109.90961 * 265.97333 * 23 19 18 39 39 H 1.08999 * 110.07899 * 144.77393 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5884 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 0.9435 0.8303 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.6306 -0.5438 4.4119 10 1 1.3445 -0.9488 5.1123 11 1 2.4881 -2.5652 3.7122 12 6 2.0324 -0.7104 -1.2304 13 8 2.7296 -1.6964 -1.1192 14 7 1.7021 -0.2532 -2.4546 15 6 2.1855 -0.9474 -3.6507 16 1 3.1702 -1.3768 -3.4661 17 6 1.1871 -2.0502 -4.0713 18 6 0.3466 -1.3551 -5.1718 19 7 1.3469 -0.5243 -5.8896 20 6 0.6928 0.5554 -6.6409 21 6 0.5892 0.3974 -8.1591 22 6 1.5696 1.4080 -7.5603 23 6 2.2408 0.0223 -4.8457 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 0.7089 1.1614 3.4843 28 1 1.1445 0.5354 -2.5436 29 1 1.7144 -2.9138 -4.4765 30 1 0.5571 -2.3411 -3.2308 31 1 -0.4263 -0.7282 -4.7272 32 1 -0.0959 -2.0906 -5.8437 33 1 -0.1313 1.0520 -6.1288 34 1 1.0067 -0.5074 -8.6006 35 1 -0.3035 0.7900 -8.6462 36 1 1.3219 2.4654 -7.6534 37 1 2.6316 1.1675 -7.6080 38 1 1.8939 1.0093 -4.5395 39 1 3.2610 0.0882 -5.2236 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596928553.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:13:25 Heat of formation + Delta-G solvation = -30.798769 kcal Electronic energy + Delta-G solvation = -18795.211785 eV Core-core repulsion = 15930.428852 eV Total energy + Delta-G solvation = -2864.782933 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.07885 -39.68596 -37.17997 -35.76881 -34.52887 -32.48097 -30.48716 -29.32754 -27.20396 -24.70153 -23.37094 -23.22809 -21.92508 -21.28160 -20.84875 -18.39586 -17.96965 -17.41128 -17.32246 -16.43797 -15.92629 -15.82201 -15.49697 -14.81378 -14.63989 -14.40308 -13.80551 -13.58883 -13.46596 -13.04310 -12.95100 -12.87627 -12.63267 -12.60641 -12.37650 -12.28351 -12.17308 -12.02701 -12.00335 -11.30243 -11.05246 -10.93134 -10.61096 -10.31664 -9.98562 -9.46721 -8.15866 -6.26151 1.40280 1.40939 1.52989 1.92035 2.29616 2.48496 2.85490 2.94262 3.13824 3.51210 3.78117 4.01349 4.05769 4.17666 4.26975 4.31319 4.37051 4.43388 4.59648 4.73464 4.80054 4.83993 4.86562 4.92168 4.98341 5.00240 5.07067 5.07818 5.14651 5.34734 5.48555 5.53977 5.73134 5.83076 5.93758 6.10680 6.20717 6.72177 6.85364 7.39515 7.54375 8.90003 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.047678 B = 0.004268 C = 0.004152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.127842 B = 6558.618099 C = 6741.932310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.023 3.977 3 H 0.041 0.959 4 C -0.529 4.529 5 H 0.048 0.952 6 C 0.020 3.980 7 N -0.911 5.911 8 Si 0.955 3.045 9 H -0.274 1.274 10 H -0.274 1.274 11 H -0.279 1.279 12 C 0.524 3.476 13 O -0.585 6.585 14 N -0.718 5.718 15 C 0.129 3.871 16 H 0.073 0.927 17 C -0.131 4.131 18 C 0.048 3.952 19 N -0.493 5.493 20 C -0.024 4.024 21 C -0.154 4.154 22 C -0.166 4.166 23 C 0.045 3.955 24 H 0.050 0.950 25 H 0.022 0.978 26 H 0.070 0.930 27 H 0.265 0.735 28 H 0.406 0.594 29 H 0.082 0.918 30 H 0.060 0.940 31 H 0.049 0.951 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.109 0.891 36 H 0.108 0.892 37 H 0.094 0.906 38 H 0.061 0.939 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.257 2.278 -19.564 19.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.002 3.998 3 H 0.058 0.942 4 C -0.568 4.568 5 H 0.066 0.934 6 C -0.179 4.179 7 N -0.551 5.551 8 Si 0.781 3.219 9 H -0.200 1.200 10 H -0.199 1.199 11 H -0.204 1.204 12 C 0.313 3.687 13 O -0.464 6.464 14 N -0.372 5.372 15 C 0.023 3.977 16 H 0.092 0.908 17 C -0.170 4.170 18 C -0.079 4.079 19 N -0.218 5.218 20 C -0.133 4.133 21 C -0.191 4.191 22 C -0.203 4.203 23 C -0.083 4.083 24 H 0.069 0.931 25 H 0.041 0.959 26 H 0.089 0.911 27 H 0.074 0.926 28 H 0.242 0.758 29 H 0.100 0.900 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.113 0.887 33 H 0.109 0.891 34 H 0.114 0.886 35 H 0.127 0.873 36 H 0.126 0.874 37 H 0.112 0.888 38 H 0.080 0.920 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.543 1.394 -19.741 19.953 hybrid contribution -0.285 0.353 1.687 1.747 sum -2.828 1.747 -18.053 18.357 Atomic orbital electron populations 1.21529 0.95032 0.99339 1.01586 1.18818 0.95338 0.95932 0.89738 0.94165 1.21293 1.31565 1.12734 0.91158 0.93369 1.25593 0.95178 0.95752 1.01419 1.69944 1.37217 1.23597 1.24310 0.85600 0.78400 0.78789 0.79136 1.20004 1.19912 1.20380 1.21518 0.78011 0.83651 0.85541 1.90507 1.39881 1.28554 1.87473 1.46159 1.54163 1.32240 1.04618 1.21754 0.98183 0.93285 0.84442 0.90840 1.22855 0.97813 0.98191 0.98137 1.23161 0.93500 0.96614 0.94630 1.64629 1.16493 1.18394 1.22237 1.22704 1.00762 0.96997 0.92798 1.23057 1.01671 1.01172 0.93216 1.23062 0.97584 0.97236 1.02416 1.22977 0.99331 0.96328 0.89633 0.93148 0.95896 0.91138 0.92599 0.75769 0.89973 0.92155 0.93283 0.88721 0.89098 0.88644 0.87284 0.87380 0.88773 0.92030 0.88867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.31 8.86 71.98 0.64 -4.67 16 2 C 0.02 1.16 2.64 -12.29 -0.03 1.12 16 3 H 0.04 2.10 8.14 -2.39 -0.02 2.08 16 4 C -0.53 -30.87 8.37 25.60 0.21 -30.66 16 5 H 0.05 3.01 6.75 -2.91 -0.02 2.99 16 6 C 0.02 1.11 5.30 84.66 0.45 1.55 16 7 N -0.91 -51.28 11.32 21.45 0.24 -51.03 16 8 Si 0.96 45.16 29.54 68.60 2.03 47.19 16 9 H -0.27 -12.64 7.11 99.48 0.71 -11.94 16 10 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 11 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 12 C 0.52 24.02 7.15 87.66 0.63 24.65 16 13 O -0.58 -31.33 15.11 -3.01 -0.05 -31.37 16 14 N -0.72 -24.27 4.95 -438.37 -2.17 -26.44 16 15 C 0.13 3.78 3.34 45.87 0.15 3.93 16 16 H 0.07 2.51 7.56 -2.39 -0.02 2.49 16 17 C -0.13 -3.51 6.78 31.80 0.22 -3.30 16 18 C 0.05 1.03 6.56 86.65 0.57 1.60 16 19 N -0.49 -10.24 5.41 -857.85 -4.64 -14.89 16 20 C -0.02 -0.41 4.85 44.92 0.22 -0.19 16 21 C -0.15 -2.17 10.46 30.60 0.32 -1.85 16 22 C -0.17 -2.40 10.22 30.60 0.31 -2.08 16 23 C 0.05 1.02 6.28 86.44 0.54 1.56 16 24 H 0.05 1.83 7.55 -2.39 -0.02 1.82 16 25 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.07 3.55 6.07 -2.39 -0.01 3.54 16 27 H 0.26 14.09 8.31 -92.71 -0.77 13.32 16 28 H 0.41 11.66 7.74 -92.71 -0.72 10.94 16 29 H 0.08 2.13 8.14 -2.39 -0.02 2.12 16 30 H 0.06 1.86 8.05 -2.39 -0.02 1.85 16 31 H 0.05 1.03 7.91 -2.39 -0.02 1.01 16 32 H 0.09 1.79 8.14 -2.38 -0.02 1.77 16 33 H 0.09 1.53 7.99 -2.39 -0.02 1.51 16 34 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.11 1.27 8.14 -2.38 -0.02 1.25 16 37 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.06 1.31 7.26 -2.39 -0.02 1.29 16 39 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 Total: -1.00 -65.99 316.94 -0.05 -66.04 By element: Atomic # 1 Polarization: 18.52 SS G_CDS: 0.31 Total: 18.83 kcal Atomic # 6 Polarization: -12.56 SS G_CDS: 4.23 Total: -8.33 kcal Atomic # 7 Polarization: -85.79 SS G_CDS: -6.57 Total: -92.36 kcal Atomic # 8 Polarization: -31.33 SS G_CDS: -0.05 Total: -31.37 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -65.99 -0.05 -66.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596928553.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.244 kcal (2) G-P(sol) polarization free energy of solvation -65.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds