Wall clock time and date at job start Mon Mar 30 2020 21:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.46966 * 2 1 4 4 C 1.50697 * 109.46754 * 239.99901 * 2 1 3 5 5 H 1.07998 * 120.00154 * 239.99751 * 4 2 1 6 6 C 1.37888 * 120.00004 * 60.00407 * 4 2 1 7 7 N 1.31512 * 119.99820 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 120.00092 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47347 * 89.99673 * 8 6 4 10 10 H 1.48500 * 109.47348 * 209.99816 * 8 6 4 11 11 H 1.48506 * 109.47394 * 329.99837 * 8 6 4 12 12 C 1.50700 * 109.46960 * 120.00212 * 2 1 3 13 13 O 1.21280 * 119.99789 * 93.90615 * 12 2 1 14 14 N 1.34774 * 119.99816 * 273.89964 * 12 2 1 15 15 C 1.47076 * 120.88218 * 5.14029 * 14 12 2 16 16 C 1.53691 * 108.28160 * 128.75141 * 15 14 12 17 17 N 1.46908 * 109.25645 * 54.07881 * 16 15 14 18 18 C 1.46899 * 110.99748 * 172.61181 * 17 16 15 19 19 C 1.52997 * 117.50254 * 13.04999 * 18 17 16 20 20 C 1.53001 * 117.49813 * 304.38451 * 18 17 16 21 21 C 1.46898 * 111.26522 * 296.75879 * 17 16 15 22 22 C 1.47085 * 120.87991 * 185.40822 * 14 12 2 23 23 H 1.09006 * 109.47195 * 174.51774 * 1 2 3 24 24 H 1.09001 * 109.46800 * 294.51507 * 1 2 3 25 25 H 1.08995 * 109.47289 * 54.51720 * 1 2 3 26 26 H 0.96998 * 120.00180 * 180.02562 * 7 6 4 27 27 H 1.09003 * 109.62414 * 248.51899 * 15 14 12 28 28 H 1.08997 * 109.62637 * 9.09514 * 15 14 12 29 29 H 1.09003 * 109.65048 * 294.08220 * 16 15 14 30 30 H 1.09004 * 109.42515 * 173.94387 * 16 15 14 31 31 H 1.09007 * 115.54620 * 158.71949 * 18 17 16 32 32 H 1.09003 * 117.49586 * 359.97438 * 19 18 17 33 33 H 1.08996 * 117.50183 * 145.02140 * 19 18 17 34 34 H 1.09002 * 117.49903 * 214.98153 * 20 18 17 35 35 H 1.08994 * 117.50275 * 359.97438 * 20 18 17 36 36 H 1.09004 * 109.49615 * 303.14318 * 21 17 16 37 37 H 1.09005 * 109.50866 * 183.07619 * 21 17 16 38 38 H 1.09003 * 109.62631 * 350.90685 * 22 14 12 39 39 H 1.09000 * 109.62326 * 111.28638 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9428 0.8297 -2.6034 8 14 2.3223 -1.1195 -4.0080 9 1 1.3446 -2.1615 -4.4124 10 1 2.4871 -0.1402 -5.1121 11 1 3.6307 -1.7566 -3.7121 12 6 2.0323 -0.7105 1.2305 13 8 2.3019 -1.8919 1.1809 14 7 2.1821 -0.0329 2.3858 15 6 1.7564 1.3704 2.4986 16 6 0.8597 1.5039 3.7397 17 7 1.5717 0.9752 4.9110 18 6 0.8232 1.2419 6.1465 19 6 -0.6284 1.7048 6.0073 20 6 0.4523 2.6954 6.4480 21 6 1.8492 -0.4597 4.7629 22 6 2.7809 -0.6755 3.5656 23 1 -0.3634 -1.0230 -0.0982 24 1 -0.3633 0.4264 0.9351 25 1 -0.3633 0.5965 -0.8368 26 1 0.7081 1.1610 -3.4844 27 1 2.6318 2.0111 2.6050 28 1 1.1963 1.6558 1.6082 29 1 -0.0611 0.9403 3.5890 30 1 0.6209 2.5548 3.9030 31 1 1.0676 0.5990 6.9922 32 1 -1.0279 1.8118 4.9988 33 1 -1.3390 1.3668 6.7615 34 1 0.4521 3.0086 7.4920 35 1 0.7639 3.4537 5.7298 36 1 0.9147 -0.9958 4.5978 37 1 2.3279 -0.8332 5.6682 38 1 2.8985 -1.7432 3.3808 39 1 3.7544 -0.2300 3.7705 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596969623.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:13:32 Heat of formation + Delta-G solvation = 2.714967 kcal Electronic energy + Delta-G solvation = -19356.912559 eV Core-core repulsion = 16493.582890 eV Total energy + Delta-G solvation = -2863.329669 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.90579 -38.38504 -35.76033 -33.83685 -32.68208 -31.10846 -30.10588 -26.74669 -25.18050 -23.77463 -22.92836 -22.42548 -21.21507 -20.10273 -18.12186 -16.90182 -16.21725 -15.91614 -15.36957 -15.06670 -14.67120 -14.39488 -14.18291 -14.02543 -13.00986 -12.77680 -12.72158 -12.41426 -12.04728 -11.72770 -11.42534 -11.19413 -11.09914 -11.01813 -10.95182 -10.91840 -10.66551 -10.62155 -10.39563 -10.27293 -9.99930 -8.98643 -8.57943 -8.34948 -8.30174 -7.95089 -6.03907 -4.06482 3.33930 3.39307 3.41778 3.47107 3.69013 3.72363 3.96408 4.46763 4.64766 4.77261 4.85372 4.96905 5.11824 5.29221 5.30914 5.44080 5.48676 5.50229 5.56288 5.70998 5.75991 5.84836 5.92887 5.96881 6.07517 6.19272 6.29002 6.63832 6.82932 6.92841 6.97363 7.00511 7.10651 7.45880 7.75078 7.97918 8.09702 8.38705 8.99042 9.22141 9.58216 11.04046 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.040686 B = 0.005214 C = 0.004840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.035934 B = 5369.068687 C = 5783.224080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.032 3.968 3 H 0.047 0.953 4 C -0.500 4.500 5 H 0.069 0.931 6 C 0.060 3.940 7 N -0.896 5.896 8 Si 0.900 3.100 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.525 3.475 13 O -0.548 6.548 14 N -0.630 5.630 15 C 0.115 3.885 16 C 0.037 3.963 17 N -0.506 5.506 18 C 0.024 3.976 19 C -0.223 4.223 20 C -0.172 4.172 21 C 0.046 3.954 22 C 0.114 3.886 23 H 0.035 0.965 24 H 0.010 0.990 25 H 0.091 0.909 26 H 0.261 0.739 27 H 0.068 0.932 28 H 0.102 0.898 29 H 0.044 0.956 30 H 0.084 0.916 31 H 0.117 0.883 32 H 0.100 0.900 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.039 0.961 37 H 0.081 0.919 38 H 0.092 0.908 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.660 4.419 16.206 16.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.011 3.989 3 H 0.065 0.935 4 C -0.538 4.538 5 H 0.087 0.913 6 C -0.141 4.141 7 N -0.535 5.535 8 Si 0.728 3.272 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.198 1.198 12 C 0.316 3.684 13 O -0.424 6.424 14 N -0.366 5.366 15 C -0.009 4.009 16 C -0.091 4.091 17 N -0.228 5.228 18 C -0.086 4.086 19 C -0.262 4.262 20 C -0.209 4.209 21 C -0.082 4.082 22 C -0.009 4.009 23 H 0.054 0.946 24 H 0.029 0.971 25 H 0.109 0.891 26 H 0.071 0.929 27 H 0.086 0.914 28 H 0.120 0.880 29 H 0.062 0.938 30 H 0.102 0.898 31 H 0.135 0.865 32 H 0.118 0.882 33 H 0.110 0.890 34 H 0.114 0.886 35 H 0.116 0.884 36 H 0.057 0.943 37 H 0.100 0.900 38 H 0.110 0.890 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.114 4.097 16.017 16.570 hybrid contribution -0.558 -0.673 -0.726 1.136 sum -1.672 3.423 15.291 15.759 Atomic orbital electron populations 1.21713 0.96265 1.00951 0.99647 1.18882 0.94187 0.96631 0.89241 0.93479 1.21069 1.31237 1.12437 0.89080 0.91313 1.24931 0.95088 0.95020 0.99052 1.69872 1.37043 1.23019 1.23568 0.86450 0.79438 0.79263 0.82053 1.20628 1.21258 1.19792 1.22047 0.75064 0.87259 0.83992 1.90515 1.50811 1.16557 1.84550 1.48415 1.63653 1.12662 1.11866 1.21889 0.98410 0.82929 0.97677 1.22734 0.95811 1.00352 0.90203 1.61831 1.44503 1.15512 1.00981 1.22660 0.93303 0.98067 0.94564 1.23579 0.93336 1.05952 1.03338 1.23066 1.02643 0.93076 1.02155 1.22485 0.99238 0.87415 0.99085 1.21518 0.95497 0.99772 0.84131 0.94612 0.97140 0.89057 0.92935 0.91383 0.87986 0.93760 0.89785 0.86485 0.88173 0.88984 0.88621 0.88448 0.94262 0.90018 0.88998 0.91647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.02 8.58 37.16 0.32 -2.70 16 2 C 0.03 0.80 1.77 -92.92 -0.16 0.63 16 3 H 0.05 1.19 6.76 -51.93 -0.35 0.84 16 4 C -0.50 -14.29 8.33 -34.44 -0.29 -14.57 16 5 H 0.07 2.08 7.05 -52.49 -0.37 1.71 16 6 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 7 N -0.90 -25.05 11.38 55.43 0.63 -24.42 16 8 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 16 9 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 12 C 0.52 12.37 6.79 -10.99 -0.07 12.29 16 13 O -0.55 -14.63 15.30 5.56 0.09 -14.54 16 14 N -0.63 -11.79 3.00 -172.19 -0.52 -12.30 16 15 C 0.11 1.81 6.16 -3.37 -0.02 1.78 16 16 C 0.04 0.49 4.28 -3.46 -0.01 0.48 16 17 N -0.51 -6.35 4.85 -226.04 -1.10 -7.45 16 18 C 0.02 0.24 6.10 -67.71 -0.41 -0.17 16 19 C -0.22 -2.15 9.59 -26.69 -0.26 -2.41 16 20 C -0.17 -1.56 9.93 -26.69 -0.27 -1.83 16 21 C 0.05 0.60 5.60 -3.70 -0.02 0.58 16 22 C 0.11 1.81 6.61 -3.60 -0.02 1.79 16 23 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 24 H 0.01 0.20 7.25 -51.93 -0.38 -0.18 16 25 H 0.09 2.31 6.24 -51.93 -0.32 1.99 16 26 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 27 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.10 1.72 4.97 -51.93 -0.26 1.46 16 29 H 0.04 0.63 7.21 -51.93 -0.37 0.25 16 30 H 0.08 0.96 6.34 -51.93 -0.33 0.63 16 31 H 0.12 1.07 8.02 -51.92 -0.42 0.66 16 32 H 0.10 1.06 5.99 -51.93 -0.31 0.74 16 33 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.10 0.92 7.22 -51.93 -0.38 0.55 16 36 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.08 0.88 8.04 -51.93 -0.42 0.46 16 38 H 0.09 1.58 7.04 -51.93 -0.37 1.21 16 39 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 303.71 15.07 4.58 4.58 Total: -1.00 -30.93 303.71 -8.60 -39.53 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -5.94 Total: 0.32 kcal Atomic # 6 Polarization: -1.23 SS G_CDS: -1.32 Total: -2.55 kcal Atomic # 7 Polarization: -43.19 SS G_CDS: -0.98 Total: -44.17 kcal Atomic # 8 Polarization: -14.63 SS G_CDS: 0.09 Total: -14.54 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -30.93 -8.60 -39.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596969623.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.246 kcal (2) G-P(sol) polarization free energy of solvation -30.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds