Wall clock time and date at job start Mon Mar 30 2020 21:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.46966 * 2 1 4 4 C 1.50697 * 109.46754 * 239.99901 * 2 1 3 5 5 H 1.07998 * 120.00154 * 239.99751 * 4 2 1 6 6 C 1.37888 * 120.00004 * 60.00407 * 4 2 1 7 7 N 1.31512 * 119.99820 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 120.00092 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47347 * 89.99673 * 8 6 4 10 10 H 1.48500 * 109.47348 * 209.99816 * 8 6 4 11 11 H 1.48506 * 109.47394 * 329.99837 * 8 6 4 12 12 C 1.50700 * 109.46960 * 120.00212 * 2 1 3 13 13 O 1.21280 * 119.99789 * 93.90615 * 12 2 1 14 14 N 1.34774 * 119.99816 * 273.89964 * 12 2 1 15 15 C 1.47076 * 120.88218 * 5.14029 * 14 12 2 16 16 C 1.53691 * 108.28160 * 128.75141 * 15 14 12 17 17 N 1.46908 * 109.25645 * 54.07881 * 16 15 14 18 18 C 1.46899 * 110.99748 * 172.61181 * 17 16 15 19 19 C 1.52997 * 117.50254 * 13.04999 * 18 17 16 20 20 C 1.53001 * 117.49813 * 304.38451 * 18 17 16 21 21 C 1.46898 * 111.26522 * 296.75879 * 17 16 15 22 22 C 1.47085 * 120.87991 * 185.40822 * 14 12 2 23 23 H 1.09006 * 109.47195 * 174.51774 * 1 2 3 24 24 H 1.09001 * 109.46800 * 294.51507 * 1 2 3 25 25 H 1.08995 * 109.47289 * 54.51720 * 1 2 3 26 26 H 0.96998 * 120.00180 * 180.02562 * 7 6 4 27 27 H 1.09003 * 109.62414 * 248.51899 * 15 14 12 28 28 H 1.08997 * 109.62637 * 9.09514 * 15 14 12 29 29 H 1.09003 * 109.65048 * 294.08220 * 16 15 14 30 30 H 1.09004 * 109.42515 * 173.94387 * 16 15 14 31 31 H 1.09007 * 115.54620 * 158.71949 * 18 17 16 32 32 H 1.09003 * 117.49586 * 359.97438 * 19 18 17 33 33 H 1.08996 * 117.50183 * 145.02140 * 19 18 17 34 34 H 1.09002 * 117.49903 * 214.98153 * 20 18 17 35 35 H 1.08994 * 117.50275 * 359.97438 * 20 18 17 36 36 H 1.09004 * 109.49615 * 303.14318 * 21 17 16 37 37 H 1.09005 * 109.50866 * 183.07619 * 21 17 16 38 38 H 1.09003 * 109.62631 * 350.90685 * 22 14 12 39 39 H 1.09000 * 109.62326 * 111.28638 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9428 0.8297 -2.6034 8 14 2.3223 -1.1195 -4.0080 9 1 1.3446 -2.1615 -4.4124 10 1 2.4871 -0.1402 -5.1121 11 1 3.6307 -1.7566 -3.7121 12 6 2.0323 -0.7105 1.2305 13 8 2.3019 -1.8919 1.1809 14 7 2.1821 -0.0329 2.3858 15 6 1.7564 1.3704 2.4986 16 6 0.8597 1.5039 3.7397 17 7 1.5717 0.9752 4.9110 18 6 0.8232 1.2419 6.1465 19 6 -0.6284 1.7048 6.0073 20 6 0.4523 2.6954 6.4480 21 6 1.8492 -0.4597 4.7629 22 6 2.7809 -0.6755 3.5656 23 1 -0.3634 -1.0230 -0.0982 24 1 -0.3633 0.4264 0.9351 25 1 -0.3633 0.5965 -0.8368 26 1 0.7081 1.1610 -3.4844 27 1 2.6318 2.0111 2.6050 28 1 1.1963 1.6558 1.6082 29 1 -0.0611 0.9403 3.5890 30 1 0.6209 2.5548 3.9030 31 1 1.0676 0.5990 6.9922 32 1 -1.0279 1.8118 4.9988 33 1 -1.3390 1.3668 6.7615 34 1 0.4521 3.0086 7.4920 35 1 0.7639 3.4537 5.7298 36 1 0.9147 -0.9958 4.5978 37 1 2.3279 -0.8332 5.6682 38 1 2.8985 -1.7432 3.3808 39 1 3.7544 -0.2300 3.7705 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596969623.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:13:32 Heat of formation + Delta-G solvation = -17.550613 kcal Electronic energy + Delta-G solvation = -19357.791341 eV Core-core repulsion = 16493.582890 eV Total energy + Delta-G solvation = -2864.208450 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.27445 -39.72494 -37.05076 -35.87118 -33.99477 -32.64242 -31.75039 -28.06040 -27.29297 -25.03152 -24.42583 -23.28698 -22.48507 -21.29725 -19.59504 -18.50180 -17.96567 -17.35433 -16.74799 -16.42207 -16.17084 -16.04368 -15.46569 -15.09617 -14.76799 -14.45077 -14.13630 -13.62410 -13.50207 -13.13046 -12.97423 -12.69941 -12.66272 -12.55690 -12.31491 -12.27194 -12.16478 -12.10050 -12.00997 -11.75512 -11.18636 -11.07692 -10.61701 -10.28037 -9.65884 -9.11982 -8.17344 -6.27512 1.40072 1.41015 1.52194 1.85595 2.11214 2.44329 2.67127 3.11932 3.12519 3.72059 3.84920 3.94174 4.02757 4.11098 4.18883 4.24512 4.36060 4.40144 4.57693 4.68029 4.69363 4.71870 4.79996 4.82568 4.90359 4.97602 4.99556 5.04907 5.12035 5.27827 5.40750 5.61173 5.70879 5.88399 5.96488 6.05556 6.16547 6.55503 6.77919 7.35919 7.45800 8.89038 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.040686 B = 0.005214 C = 0.004840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.035934 B = 5369.068687 C = 5783.224080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.030 3.970 3 H 0.043 0.957 4 C -0.531 4.531 5 H 0.042 0.958 6 C 0.023 3.977 7 N -0.908 5.908 8 Si 0.956 3.044 9 H -0.276 1.276 10 H -0.272 1.272 11 H -0.278 1.278 12 C 0.522 3.478 13 O -0.591 6.591 14 N -0.622 5.622 15 C 0.109 3.891 16 C 0.047 3.953 17 N -0.509 5.509 18 C 0.011 3.989 19 C -0.224 4.224 20 C -0.160 4.160 21 C 0.056 3.944 22 C 0.110 3.890 23 H 0.017 0.983 24 H 0.041 0.959 25 H 0.074 0.926 26 H 0.266 0.734 27 H 0.081 0.919 28 H 0.089 0.911 29 H 0.033 0.967 30 H 0.106 0.894 31 H 0.133 0.867 32 H 0.089 0.911 33 H 0.103 0.897 34 H 0.114 0.886 35 H 0.094 0.906 36 H 0.026 0.974 37 H 0.112 0.888 38 H 0.074 0.926 39 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.817 5.555 17.797 18.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.009 3.991 3 H 0.061 0.939 4 C -0.569 4.569 5 H 0.060 0.940 6 C -0.177 4.177 7 N -0.547 5.547 8 Si 0.781 3.219 9 H -0.202 1.202 10 H -0.197 1.197 11 H -0.203 1.203 12 C 0.313 3.687 13 O -0.471 6.471 14 N -0.356 5.356 15 C -0.013 4.013 16 C -0.081 4.081 17 N -0.232 5.232 18 C -0.098 4.098 19 C -0.263 4.263 20 C -0.198 4.198 21 C -0.072 4.072 22 C -0.012 4.012 23 H 0.036 0.964 24 H 0.060 0.940 25 H 0.093 0.907 26 H 0.076 0.924 27 H 0.100 0.900 28 H 0.107 0.893 29 H 0.052 0.948 30 H 0.124 0.876 31 H 0.151 0.849 32 H 0.107 0.893 33 H 0.122 0.878 34 H 0.132 0.868 35 H 0.113 0.887 36 H 0.044 0.956 37 H 0.130 0.870 38 H 0.093 0.907 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.283 5.285 17.654 18.473 hybrid contribution -0.501 -0.961 -1.154 1.583 sum -1.784 4.324 16.501 17.151 Atomic orbital electron populations 1.21506 0.95346 0.99613 1.00593 1.18789 0.94934 0.96035 0.89344 0.93882 1.21199 1.32074 1.12405 0.91214 0.93970 1.25573 0.95094 0.95678 1.01316 1.69937 1.36956 1.23390 1.24449 0.85589 0.78619 0.78549 0.79093 1.20184 1.19652 1.20276 1.21701 0.75217 0.86740 0.85056 1.90483 1.53001 1.18132 1.85455 1.48372 1.62300 1.13690 1.11283 1.22079 0.99394 0.81147 0.98703 1.22618 0.94506 1.01584 0.89398 1.61836 1.45059 1.14777 1.01524 1.22814 0.93651 0.99549 0.93802 1.23593 0.93284 1.06249 1.03212 1.23143 1.01301 0.92146 1.03198 1.22391 0.98095 0.88017 0.98732 1.21721 0.96878 0.98673 0.83948 0.96408 0.93970 0.90680 0.92448 0.90033 0.89284 0.94828 0.87618 0.84921 0.89260 0.87816 0.86752 0.88747 0.95592 0.87019 0.90750 0.90163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.40 8.58 71.98 0.62 -4.78 16 2 C 0.03 1.55 1.77 -12.29 -0.02 1.53 16 3 H 0.04 2.23 6.76 -2.39 -0.02 2.22 16 4 C -0.53 -31.23 8.33 25.60 0.21 -31.02 16 5 H 0.04 2.66 7.05 -2.91 -0.02 2.64 16 6 C 0.02 1.29 5.30 84.66 0.45 1.74 16 7 N -0.91 -50.91 11.38 21.45 0.24 -50.67 16 8 Si 0.96 45.10 29.54 68.60 2.03 47.13 16 9 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 10 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 11 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 12 C 0.52 25.20 6.79 87.66 0.60 25.79 16 13 O -0.59 -32.72 15.30 -3.03 -0.05 -32.76 16 14 N -0.62 -23.20 3.00 -817.07 -2.45 -25.65 16 15 C 0.11 3.33 6.16 86.50 0.53 3.86 16 16 C 0.05 1.15 4.28 86.53 0.37 1.52 16 17 N -0.51 -11.44 4.85 -869.06 -4.21 -15.65 16 18 C 0.01 0.19 6.10 44.91 0.27 0.46 16 19 C -0.22 -3.70 9.59 30.62 0.29 -3.41 16 20 C -0.16 -2.36 9.93 30.62 0.30 -2.05 16 21 C 0.06 1.35 5.60 86.38 0.48 1.83 16 22 C 0.11 3.41 6.61 86.35 0.57 3.98 16 23 H 0.02 0.86 8.14 -2.38 -0.02 0.84 16 24 H 0.04 1.69 7.25 -2.39 -0.02 1.68 16 25 H 0.07 3.84 6.24 -2.39 -0.01 3.83 16 26 H 0.27 14.07 8.31 -92.71 -0.77 13.30 16 27 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 28 H 0.09 2.95 4.97 -2.39 -0.01 2.94 16 29 H 0.03 0.90 7.21 -2.39 -0.02 0.88 16 30 H 0.11 2.14 6.34 -2.38 -0.02 2.13 16 31 H 0.13 1.93 8.02 -2.38 -0.02 1.91 16 32 H 0.09 1.69 5.99 -2.39 -0.01 1.67 16 33 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.09 1.47 7.22 -2.39 -0.02 1.45 16 36 H 0.03 0.70 8.14 -2.38 -0.02 0.68 16 37 H 0.11 2.05 8.04 -2.38 -0.02 2.03 16 38 H 0.07 2.58 7.04 -2.39 -0.02 2.56 16 39 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -67.43 303.71 1.27 -66.16 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: 1.03 Total: 11.99 kcal Atomic # 6 Polarization: -5.22 SS G_CDS: 4.68 Total: -0.54 kcal Atomic # 7 Polarization: -85.55 SS G_CDS: -6.42 Total: -91.97 kcal Atomic # 8 Polarization: -32.72 SS G_CDS: -0.05 Total: -32.76 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -67.43 1.27 -66.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596969623.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.608 kcal (2) G-P(sol) polarization free energy of solvation -67.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds