Wall clock time and date at job start Mon Mar 30 2020 21:13:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08996 * 109.47601 * 2 1 4 4 C 1.50703 * 109.46898 * 239.99593 * 2 1 3 5 5 H 1.07993 * 120.00197 * 240.00301 * 4 2 1 6 6 C 1.37883 * 119.99519 * 60.00512 * 4 2 1 7 7 N 1.31512 * 120.00420 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99621 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47199 * 89.99850 * 8 6 4 10 10 H 1.48492 * 109.46880 * 209.99903 * 8 6 4 11 11 H 1.48502 * 109.47123 * 330.00090 * 8 6 4 12 12 C 1.50704 * 109.47008 * 120.00404 * 2 1 3 13 13 O 1.21278 * 120.00433 * 87.58832 * 12 2 1 14 14 N 1.34777 * 119.99522 * 267.58769 * 12 2 1 15 15 C 1.47366 * 125.57557 * 173.67714 * 14 12 2 16 16 C 1.54825 * 104.79393 * 154.80803 * 15 14 12 17 17 C 1.54930 * 101.89814 * 37.09725 * 16 15 14 18 18 H 1.09010 * 112.82065 * 87.58359 * 17 16 15 19 19 C 1.55775 * 108.56127 * 215.37619 * 17 16 15 20 20 N 1.47852 * 107.26657 * 113.94142 * 19 17 16 21 21 C 1.46901 * 111.00066 * 212.11729 * 20 19 17 22 22 C 1.48414 * 105.77686 * 332.60805 * 20 19 17 23 23 C 1.46861 * 125.57772 * 353.65546 * 14 12 2 24 24 H 1.08990 * 112.02103 * 59.35978 * 23 14 12 25 25 H 1.08997 * 109.46565 * 53.72721 * 1 2 3 26 26 H 1.09000 * 109.47125 * 173.73413 * 1 2 3 27 27 H 1.09004 * 109.46378 * 293.73237 * 1 2 3 28 28 H 0.96998 * 120.00242 * 180.02562 * 7 6 4 29 29 H 1.09004 * 110.37111 * 35.98548 * 15 14 12 30 30 H 1.08991 * 110.46734 * 273.68919 * 15 14 12 31 31 H 1.09000 * 110.94401 * 155.25668 * 16 15 14 32 32 H 1.09006 * 110.94690 * 278.94680 * 16 15 14 33 33 H 1.09005 * 110.48919 * 354.15435 * 19 17 16 34 34 H 1.09001 * 109.33922 * 233.08494 * 19 17 16 35 35 H 1.09001 * 109.47501 * 177.46533 * 21 20 19 36 36 H 1.08998 * 109.47752 * 297.46958 * 21 20 19 37 37 H 1.09003 * 109.47083 * 57.46825 * 21 20 19 38 38 H 1.09004 * 110.58637 * 280.53581 * 22 20 19 39 39 H 1.08997 * 110.59068 * 157.62922 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3224 -1.1197 -4.0080 9 1 1.3447 -2.1616 -4.4123 10 1 2.4872 -0.1404 -5.1120 11 1 3.6307 -1.7568 -3.7119 12 6 2.0324 -0.7105 1.2304 13 8 2.1929 -1.9125 1.2136 14 7 2.3033 -0.0101 2.3496 15 6 2.6715 -0.5876 3.6544 16 6 3.4784 0.5259 4.3660 17 6 2.7262 1.8031 3.9153 18 1 1.8907 2.0545 4.5688 19 6 3.7637 2.9502 3.7300 20 7 3.7925 3.2876 2.2908 21 6 5.1324 3.7278 1.8799 22 6 3.3981 2.0473 1.5776 23 6 2.2802 1.4536 2.4681 24 1 1.3011 1.8676 2.2279 25 1 -0.3632 0.6080 -0.8285 26 1 -0.3633 -1.0215 -0.1122 27 1 -0.3632 0.4136 0.9408 28 1 0.7082 1.1609 -3.4844 29 1 3.2897 -1.4746 3.5159 30 1 1.7781 -0.8343 4.2278 31 1 3.4331 0.4085 5.4487 32 1 4.5120 0.5399 4.0200 33 1 4.7525 2.6266 4.0552 34 1 3.4488 3.8187 4.3086 35 1 5.1369 3.9266 0.8082 36 1 5.3974 4.6372 2.4192 37 1 5.8573 2.9462 2.1075 38 1 4.2409 1.3592 1.5105 39 1 3.0136 2.2816 0.5849 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597690040.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:13:56 Heat of formation + Delta-G solvation = -24.313656 kcal Electronic energy + Delta-G solvation = -19818.791568 eV Core-core repulsion = 16954.289850 eV Total energy + Delta-G solvation = -2864.501718 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.31777 -37.94692 -35.47344 -33.73158 -31.84218 -30.37572 -29.63420 -27.29776 -25.28382 -25.16195 -23.60747 -21.16862 -21.00778 -20.23644 -18.35517 -16.81353 -16.02770 -15.85720 -14.83818 -14.72700 -14.65249 -14.32469 -13.94552 -13.39454 -13.21478 -12.86804 -12.65788 -12.27892 -11.94690 -11.88849 -11.56380 -11.37466 -11.34076 -10.98343 -10.87650 -10.73278 -10.63381 -10.62177 -10.55776 -10.16853 -10.01809 -8.96185 -8.59632 -8.39108 -8.32180 -8.02215 -6.02780 -4.06001 3.33517 3.39215 3.43737 3.58002 3.69467 4.16184 4.43674 4.50548 4.61156 4.73203 5.17520 5.18568 5.30359 5.35177 5.41080 5.50186 5.51585 5.61893 5.77055 5.78419 5.84237 5.91697 5.99528 6.15481 6.22193 6.29835 6.33632 6.68653 6.85323 6.91663 6.99182 7.04295 7.08686 7.53021 7.77838 7.99650 8.14878 8.41976 8.98116 9.21973 9.58297 11.04745 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.023594 B = 0.007304 C = 0.006319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.461591 B = 3832.760242 C = 4430.041824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.032 3.968 3 H 0.051 0.949 4 C -0.501 4.501 5 H 0.066 0.934 6 C 0.062 3.938 7 N -0.892 5.892 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.274 1.274 12 C 0.539 3.461 13 O -0.548 6.548 14 N -0.629 5.629 15 C 0.103 3.897 16 C -0.128 4.128 17 C -0.107 4.107 18 H 0.102 0.898 19 C 0.044 3.956 20 N -0.520 5.520 21 C 0.018 3.982 22 C 0.025 3.975 23 C 0.140 3.860 24 H 0.095 0.905 25 H 0.091 0.909 26 H 0.035 0.965 27 H 0.009 0.991 28 H 0.261 0.739 29 H 0.073 0.927 30 H 0.060 0.940 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.047 0.953 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.066 0.934 37 H 0.026 0.974 38 H 0.050 0.950 39 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.800 6.331 13.119 15.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.011 3.989 3 H 0.069 0.931 4 C -0.540 4.540 5 H 0.084 0.916 6 C -0.140 4.140 7 N -0.531 5.531 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.212 1.212 11 H -0.199 1.199 12 C 0.331 3.669 13 O -0.423 6.423 14 N -0.366 5.366 15 C -0.020 4.020 16 C -0.166 4.166 17 C -0.126 4.126 18 H 0.120 0.880 19 C -0.085 4.085 20 N -0.244 5.244 21 C -0.131 4.131 22 C -0.104 4.104 23 C 0.035 3.965 24 H 0.113 0.887 25 H 0.109 0.891 26 H 0.054 0.946 27 H 0.028 0.972 28 H 0.071 0.929 29 H 0.092 0.908 30 H 0.078 0.922 31 H 0.098 0.902 32 H 0.090 0.910 33 H 0.065 0.935 34 H 0.095 0.905 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.044 0.956 38 H 0.069 0.931 39 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 4.448 6.155 12.740 14.832 hybrid contribution 0.918 -1.042 -0.629 1.525 sum 5.366 5.113 12.111 14.199 Atomic orbital electron populations 1.21661 0.96144 1.01006 0.99581 1.18967 0.94236 0.96924 0.88790 0.93081 1.21023 1.31422 1.12384 0.89162 0.91621 1.24914 0.95083 0.95008 0.98951 1.69880 1.36813 1.22880 1.23562 0.86484 0.79402 0.79326 0.82197 1.20577 1.21227 1.19887 1.21869 0.74403 0.87450 0.83158 1.90535 1.52660 1.15633 1.83506 1.48838 1.71514 1.06075 1.10175 1.22080 0.98266 0.96840 0.84815 1.22900 0.99091 0.94322 1.00302 1.23355 0.98011 0.94835 0.96421 0.88024 1.23215 0.97403 0.97380 0.90463 1.64721 1.25657 1.30451 1.03550 1.22497 0.88805 0.99753 1.02067 1.23777 0.97400 0.89822 0.99363 1.22308 0.99120 0.81085 0.94005 0.88747 0.89072 0.94570 0.97161 0.92898 0.90848 0.92201 0.90195 0.91025 0.93473 0.90493 0.90927 0.91540 0.95592 0.93139 0.88006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.08 8.86 37.16 0.33 -2.75 16 2 C 0.03 0.81 2.27 -92.92 -0.21 0.60 16 3 H 0.05 1.29 4.93 -51.93 -0.26 1.03 16 4 C -0.50 -14.32 8.32 -34.44 -0.29 -14.61 16 5 H 0.07 1.98 7.19 -52.49 -0.38 1.60 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -25.01 11.39 55.43 0.63 -24.38 16 8 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 9 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 12 C 0.54 12.87 6.65 -10.98 -0.07 12.80 16 13 O -0.55 -14.87 16.24 5.56 0.09 -14.78 16 14 N -0.63 -11.86 2.97 -161.53 -0.48 -12.34 16 15 C 0.10 1.57 6.94 -2.61 -0.02 1.56 16 16 C -0.13 -1.47 6.39 -24.75 -0.16 -1.63 16 17 C -0.11 -1.28 4.15 -86.84 -0.36 -1.64 16 18 H 0.10 1.04 8.14 -51.92 -0.42 0.62 16 19 C 0.04 0.50 6.26 -1.82 -0.01 0.49 16 20 N -0.52 -7.20 5.56 -237.78 -1.32 -8.52 16 21 C 0.02 0.21 9.41 60.06 0.57 0.78 16 22 C 0.02 0.41 5.25 -2.06 -0.01 0.40 16 23 C 0.14 2.24 3.32 -65.52 -0.22 2.02 16 24 H 0.09 1.57 8.14 -51.93 -0.42 1.14 16 25 H 0.09 2.37 6.26 -51.93 -0.33 2.04 16 26 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 27 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 28 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 29 H 0.07 1.21 7.95 -51.93 -0.41 0.79 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.86 7.51 -51.93 -0.39 0.47 16 33 H 0.05 0.50 6.91 -51.93 -0.36 0.14 16 34 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.03 0.30 7.98 -51.93 -0.41 -0.11 16 38 H 0.05 0.90 7.93 -51.93 -0.41 0.49 16 39 H 0.10 1.94 6.46 -51.93 -0.34 1.61 16 LS Contribution 304.84 15.07 4.59 4.59 Total: -1.00 -31.26 304.84 -8.27 -39.53 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -6.22 Total: -0.56 kcal Atomic # 6 Polarization: 0.17 SS G_CDS: -0.55 Total: -0.38 kcal Atomic # 7 Polarization: -44.07 SS G_CDS: -1.17 Total: -45.24 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: 0.09 Total: -14.78 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.26 -8.27 -39.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597690040.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.219 kcal (2) G-P(sol) polarization free energy of solvation -31.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds