Wall clock time and date at job start Mon Mar 30 2020 21:13:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08996 * 109.47601 * 2 1 4 4 C 1.50703 * 109.46898 * 239.99593 * 2 1 3 5 5 H 1.07993 * 120.00197 * 240.00301 * 4 2 1 6 6 C 1.37883 * 119.99519 * 60.00512 * 4 2 1 7 7 N 1.31512 * 120.00420 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99621 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47199 * 89.99850 * 8 6 4 10 10 H 1.48492 * 109.46880 * 209.99903 * 8 6 4 11 11 H 1.48502 * 109.47123 * 330.00090 * 8 6 4 12 12 C 1.50704 * 109.47008 * 120.00404 * 2 1 3 13 13 O 1.21278 * 120.00433 * 87.58832 * 12 2 1 14 14 N 1.34777 * 119.99522 * 267.58769 * 12 2 1 15 15 C 1.47366 * 125.57557 * 173.67714 * 14 12 2 16 16 C 1.54825 * 104.79393 * 154.80803 * 15 14 12 17 17 C 1.54930 * 101.89814 * 37.09725 * 16 15 14 18 18 H 1.09010 * 112.82065 * 87.58359 * 17 16 15 19 19 C 1.55775 * 108.56127 * 215.37619 * 17 16 15 20 20 N 1.47852 * 107.26657 * 113.94142 * 19 17 16 21 21 C 1.46901 * 111.00066 * 212.11729 * 20 19 17 22 22 C 1.48414 * 105.77686 * 332.60805 * 20 19 17 23 23 C 1.46861 * 125.57772 * 353.65546 * 14 12 2 24 24 H 1.08990 * 112.02103 * 59.35978 * 23 14 12 25 25 H 1.08997 * 109.46565 * 53.72721 * 1 2 3 26 26 H 1.09000 * 109.47125 * 173.73413 * 1 2 3 27 27 H 1.09004 * 109.46378 * 293.73237 * 1 2 3 28 28 H 0.96998 * 120.00242 * 180.02562 * 7 6 4 29 29 H 1.09004 * 110.37111 * 35.98548 * 15 14 12 30 30 H 1.08991 * 110.46734 * 273.68919 * 15 14 12 31 31 H 1.09000 * 110.94401 * 155.25668 * 16 15 14 32 32 H 1.09006 * 110.94690 * 278.94680 * 16 15 14 33 33 H 1.09005 * 110.48919 * 354.15435 * 19 17 16 34 34 H 1.09001 * 109.33922 * 233.08494 * 19 17 16 35 35 H 1.09001 * 109.47501 * 177.46533 * 21 20 19 36 36 H 1.08998 * 109.47752 * 297.46958 * 21 20 19 37 37 H 1.09003 * 109.47083 * 57.46825 * 21 20 19 38 38 H 1.09004 * 110.58637 * 280.53581 * 22 20 19 39 39 H 1.08997 * 110.59068 * 157.62922 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3224 -1.1197 -4.0080 9 1 1.3447 -2.1616 -4.4123 10 1 2.4872 -0.1404 -5.1120 11 1 3.6307 -1.7568 -3.7119 12 6 2.0324 -0.7105 1.2304 13 8 2.1929 -1.9125 1.2136 14 7 2.3033 -0.0101 2.3496 15 6 2.6715 -0.5876 3.6544 16 6 3.4784 0.5259 4.3660 17 6 2.7262 1.8031 3.9153 18 1 1.8907 2.0545 4.5688 19 6 3.7637 2.9502 3.7300 20 7 3.7925 3.2876 2.2908 21 6 5.1324 3.7278 1.8799 22 6 3.3981 2.0473 1.5776 23 6 2.2802 1.4536 2.4681 24 1 1.3011 1.8676 2.2279 25 1 -0.3632 0.6080 -0.8285 26 1 -0.3633 -1.0215 -0.1122 27 1 -0.3632 0.4136 0.9408 28 1 0.7082 1.1609 -3.4844 29 1 3.2897 -1.4746 3.5159 30 1 1.7781 -0.8343 4.2278 31 1 3.4331 0.4085 5.4487 32 1 4.5120 0.5399 4.0200 33 1 4.7525 2.6266 4.0552 34 1 3.4488 3.8187 4.3086 35 1 5.1369 3.9266 0.8082 36 1 5.3974 4.6372 2.4192 37 1 5.8573 2.9462 2.1075 38 1 4.2409 1.3592 1.5105 39 1 3.0136 2.2816 0.5849 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597690040.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:13:55 Heat of formation + Delta-G solvation = -46.111437 kcal Electronic energy + Delta-G solvation = -19819.736790 eV Core-core repulsion = 16954.289850 eV Total energy + Delta-G solvation = -2865.446941 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.66488 -39.58902 -36.77957 -35.80723 -33.36002 -32.09950 -30.94842 -28.51209 -27.30540 -26.35391 -25.25609 -22.80798 -22.12094 -21.39146 -19.92855 -18.52589 -17.88591 -17.39056 -16.61464 -16.13862 -16.05039 -15.58539 -15.34617 -14.86759 -14.66035 -14.36809 -14.13216 -13.61025 -13.57504 -13.30398 -13.02601 -12.95087 -12.64611 -12.62870 -12.57645 -12.41011 -12.20270 -12.08195 -11.84394 -11.77329 -11.64147 -11.07103 -10.63336 -10.34539 -9.67898 -9.37353 -8.17941 -6.28797 1.37643 1.38911 1.49519 1.82660 2.09549 2.42560 3.06793 3.11897 3.32979 3.53733 3.68995 4.07501 4.13953 4.21113 4.27569 4.35424 4.51004 4.51782 4.60638 4.64120 4.76394 4.79738 4.85264 4.90478 4.97112 4.97856 5.01763 5.06133 5.07969 5.28188 5.38944 5.54692 5.69436 5.80117 5.87817 6.06113 6.15153 6.60638 6.76481 7.33990 7.43651 8.88240 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.023594 B = 0.007304 C = 0.006319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.461591 B = 3832.760242 C = 4430.041824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.029 3.971 3 H 0.049 0.951 4 C -0.530 4.530 5 H 0.039 0.961 6 C 0.024 3.976 7 N -0.906 5.906 8 Si 0.954 3.046 9 H -0.275 1.275 10 H -0.271 1.271 11 H -0.278 1.278 12 C 0.536 3.464 13 O -0.593 6.593 14 N -0.624 5.624 15 C 0.093 3.907 16 C -0.112 4.112 17 C -0.092 4.092 18 H 0.132 0.868 19 C 0.045 3.955 20 N -0.528 5.528 21 C 0.016 3.984 22 C 0.032 3.968 23 C 0.128 3.872 24 H 0.088 0.912 25 H 0.075 0.925 26 H 0.018 0.982 27 H 0.038 0.962 28 H 0.266 0.734 29 H 0.056 0.944 30 H 0.077 0.923 31 H 0.122 0.878 32 H 0.067 0.933 33 H 0.061 0.939 34 H 0.103 0.897 35 H 0.059 0.941 36 H 0.093 0.907 37 H 0.028 0.972 38 H 0.031 0.969 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.262 7.774 15.240 17.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.008 3.992 3 H 0.067 0.933 4 C -0.569 4.569 5 H 0.057 0.943 6 C -0.176 4.176 7 N -0.545 5.545 8 Si 0.780 3.220 9 H -0.201 1.201 10 H -0.196 1.196 11 H -0.203 1.203 12 C 0.328 3.672 13 O -0.473 6.473 14 N -0.359 5.359 15 C -0.029 4.029 16 C -0.150 4.150 17 C -0.111 4.111 18 H 0.150 0.850 19 C -0.083 4.083 20 N -0.252 5.252 21 C -0.132 4.132 22 C -0.096 4.096 23 C 0.024 3.976 24 H 0.106 0.894 25 H 0.093 0.907 26 H 0.038 0.962 27 H 0.056 0.944 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.096 0.904 31 H 0.140 0.860 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.121 0.879 35 H 0.078 0.922 36 H 0.111 0.889 37 H 0.046 0.954 38 H 0.049 0.951 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.917 7.654 14.905 17.461 hybrid contribution 0.786 -1.426 -1.252 2.054 sum 5.703 6.228 13.653 16.053 Atomic orbital electron populations 1.21483 0.95633 0.99696 1.00362 1.18879 0.94695 0.96547 0.89084 0.93283 1.21137 1.32203 1.12273 0.91261 0.94293 1.25565 0.95091 0.95662 1.01261 1.69951 1.36798 1.23307 1.24435 0.85617 0.78616 0.78615 0.79188 1.20101 1.19558 1.20303 1.21443 0.74677 0.86836 0.84273 1.90496 1.54989 1.17255 1.84544 1.48714 1.69369 1.07572 1.10203 1.22411 0.99494 0.97722 0.83296 1.22899 0.97900 0.91997 1.02219 1.23451 0.99000 0.95134 0.93496 0.85042 1.23342 0.98020 0.98190 0.88739 1.64712 1.26915 1.28536 1.05030 1.22556 0.87938 1.00881 1.01828 1.23471 0.96892 0.90900 0.98380 1.22569 0.98749 0.79024 0.97297 0.89389 0.90674 0.96235 0.94350 0.92429 0.92583 0.90449 0.86008 0.91466 0.92081 0.87921 0.92170 0.88856 0.95384 0.95100 0.91612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.70 8.86 71.98 0.64 -5.06 16 2 C 0.03 1.53 2.27 -12.28 -0.03 1.50 16 3 H 0.05 2.59 4.93 -2.39 -0.01 2.58 16 4 C -0.53 -31.62 8.32 25.60 0.21 -31.40 16 5 H 0.04 2.48 7.19 -2.91 -0.02 2.46 16 6 C 0.02 1.37 5.30 84.66 0.45 1.82 16 7 N -0.91 -51.59 11.39 21.45 0.24 -51.34 16 8 Si 0.95 45.53 29.54 68.60 2.03 47.56 16 9 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 10 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 11 H -0.28 -13.34 7.11 99.48 0.71 -12.64 16 12 C 0.54 26.49 6.65 87.66 0.58 27.08 16 13 O -0.59 -33.61 16.24 -3.02 -0.05 -33.66 16 14 N -0.62 -23.53 2.97 -783.36 -2.33 -25.85 16 15 C 0.09 2.68 6.94 86.84 0.60 3.29 16 16 C -0.11 -2.16 6.39 31.88 0.20 -1.96 16 17 C -0.09 -1.83 4.15 -8.34 -0.03 -1.87 16 18 H 0.13 1.96 8.14 -2.38 -0.02 1.94 16 19 C 0.04 0.83 6.26 87.08 0.54 1.38 16 20 N -0.53 -13.68 5.56 -906.21 -5.04 -18.71 16 21 C 0.02 0.36 9.41 127.69 1.20 1.57 16 22 C 0.03 1.09 5.25 86.61 0.45 1.54 16 23 C 0.13 3.96 3.32 46.36 0.15 4.12 16 24 H 0.09 2.85 8.14 -2.39 -0.02 2.83 16 25 H 0.07 3.99 6.26 -2.39 -0.01 3.97 16 26 H 0.02 0.98 8.14 -2.39 -0.02 0.97 16 27 H 0.04 1.64 8.14 -2.38 -0.02 1.62 16 28 H 0.27 14.29 8.31 -92.71 -0.77 13.52 16 29 H 0.06 1.83 7.95 -2.38 -0.02 1.81 16 30 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.07 1.39 7.51 -2.38 -0.02 1.38 16 33 H 0.06 1.02 6.91 -2.38 -0.02 1.00 16 34 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.03 0.61 7.98 -2.39 -0.02 0.59 16 38 H 0.03 1.13 7.93 -2.38 -0.02 1.11 16 39 H 0.07 2.65 6.46 -2.39 -0.02 2.64 16 Total: -1.00 -70.86 304.84 0.86 -70.00 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: 1.02 Total: 10.01 kcal Atomic # 6 Polarization: -2.98 SS G_CDS: 4.98 Total: 2.00 kcal Atomic # 7 Polarization: -88.79 SS G_CDS: -7.12 Total: -95.91 kcal Atomic # 8 Polarization: -33.61 SS G_CDS: -0.05 Total: -33.66 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -70.86 0.86 -70.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597690040.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.884 kcal (2) G-P(sol) polarization free energy of solvation -70.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds