Wall clock time and date at job start Mon Mar 30 2020 21:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46893 * 109.47402 * 2 1 4 4 C 1.46903 * 110.99739 * 287.99971 * 3 2 1 5 5 C 1.50703 * 109.47232 * 160.35956 * 4 3 2 6 6 H 1.08000 * 120.00013 * 4.66060 * 5 4 3 7 7 C 1.37875 * 120.00026 * 184.65594 * 5 4 3 8 8 N 1.31514 * 120.00208 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00201 * 179.97438 * 7 5 4 10 10 H 1.48512 * 109.47167 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47262 * 119.99818 * 9 7 5 12 12 H 1.48500 * 109.47550 * 240.00225 * 9 7 5 13 13 C 1.46894 * 111.00417 * 164.04668 * 3 2 1 14 14 C 1.53003 * 109.46954 * 293.95045 * 13 3 2 15 15 H 1.09001 * 109.47220 * 60.00075 * 14 13 3 16 16 O 1.42895 * 109.47144 * 299.99994 * 14 13 3 17 17 C 1.53003 * 109.47305 * 179.97438 * 14 13 3 18 18 C 1.52995 * 109.47058 * 185.00270 * 17 14 13 19 19 C 1.47193 * 115.55237 * 34.32955 * 18 17 14 20 20 N 4.99352 * 115.10886 * 108.79935 * 2 1 3 21 21 C 1.53006 * 117.49607 * 248.62012 * 18 17 14 22 22 C 1.53001 * 60.00010 * 252.50975 * 21 18 17 23 23 H 1.08997 * 109.47179 * 59.46511 * 1 2 3 24 24 H 1.08998 * 109.47411 * 179.46474 * 1 2 3 25 25 H 1.09008 * 109.47393 * 299.46512 * 1 2 3 26 26 H 1.09001 * 109.47093 * 239.99454 * 2 1 3 27 27 H 1.09004 * 109.47116 * 120.00066 * 2 1 3 28 28 H 1.09005 * 109.46883 * 280.35656 * 4 3 2 29 29 H 1.08992 * 109.47543 * 40.35693 * 4 3 2 30 30 H 0.97000 * 120.00647 * 179.97438 * 8 7 5 31 31 H 1.09002 * 109.47602 * 173.95186 * 13 3 2 32 32 H 1.08999 * 109.47587 * 53.94793 * 13 3 2 33 33 H 0.96699 * 113.99971 * 299.99783 * 16 14 13 34 34 H 1.09001 * 109.47242 * 64.99865 * 17 14 13 35 35 H 1.09001 * 109.46911 * 305.00081 * 17 14 13 36 36 H 1.08999 * 117.49664 * 0.02562 * 21 18 17 37 37 H 1.09000 * 117.49716 * 145.02369 * 21 18 17 38 38 H 1.08996 * 117.50258 * 252.51157 * 22 21 18 39 39 H 1.08999 * 117.49569 * 107.49035 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 1.7956 2.0225 -1.3044 5 6 1.8469 3.5204 -1.1468 6 1 2.1022 3.9544 -0.1914 7 6 1.5681 4.3366 -2.2224 8 7 1.2579 3.8081 -3.3860 9 14 1.6311 6.1933 -2.0270 10 1 2.0025 6.5316 -0.6295 11 1 2.6431 6.7549 -2.9574 12 1 0.2984 6.7694 -2.3388 13 6 3.4383 1.4417 0.3769 14 6 3.5972 0.9996 1.8330 15 1 3.2322 -0.0215 1.9446 16 8 2.8440 1.8698 2.6800 17 6 5.0748 1.0581 2.2255 18 6 5.2497 0.4987 3.6387 19 6 4.3458 -0.6051 4.0009 20 7 3.6489 -1.4571 4.2804 21 6 5.6441 1.4809 4.7435 22 6 6.6658 0.4709 4.2173 23 1 -0.3633 0.5221 -0.8851 24 1 -0.3634 -1.0276 -0.0096 25 1 -0.3634 0.5055 0.8948 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 2.5699 1.7038 -2.0023 29 1 0.8181 1.7308 -1.6882 30 1 1.0614 4.3823 -4.1427 31 1 3.8033 2.4627 0.2654 32 1 4.0128 0.7779 -0.2691 33 1 3.1151 2.7968 2.6321 34 1 5.4170 2.0927 2.1993 35 1 5.6608 0.4638 1.5244 36 1 5.7786 2.5257 4.4636 37 1 5.2341 1.3099 5.7389 38 1 6.9280 -0.3645 4.8665 39 1 7.4729 0.8512 3.5912 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599307246.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:14:07 Heat of formation + Delta-G solvation = 0.738446 kcal Electronic energy + Delta-G solvation = -18816.246542 eV Core-core repulsion = 15952.831165 eV Total energy + Delta-G solvation = -2863.415377 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.34080 -37.49687 -35.70022 -35.45020 -32.60938 -31.13760 -29.79436 -27.40962 -25.17725 -23.14365 -22.80301 -22.56984 -21.57203 -19.63401 -17.39928 -16.40645 -15.94757 -15.62818 -15.01394 -14.81739 -14.42314 -14.14997 -13.80626 -13.64563 -13.32581 -13.11508 -12.85695 -12.26841 -12.19834 -11.99178 -11.74823 -11.57047 -11.39893 -11.25576 -10.91783 -10.87425 -10.82142 -10.69755 -10.42017 -10.21879 -10.12209 -9.78951 -9.30885 -9.16243 -8.40753 -7.17088 -6.01180 -4.02145 2.49830 2.74106 3.30475 3.38328 3.42017 3.66592 3.75843 4.16011 4.42835 4.53774 4.67785 4.79148 5.03284 5.16553 5.30436 5.34301 5.41234 5.43391 5.56680 5.68201 5.76327 5.78263 5.83673 5.85579 6.00379 6.15880 6.30822 6.37613 6.55176 6.65555 6.89900 7.25587 7.35817 7.56685 7.83277 8.07767 8.17703 8.26702 8.57551 9.05561 9.61719 11.09505 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.023113 B = 0.005541 C = 0.004778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.169978 B = 5051.952110 C = 5858.626829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.051 3.949 3 N -0.523 5.523 4 C 0.189 3.811 5 C -0.500 4.500 6 H 0.063 0.937 7 C 0.053 3.947 8 N -0.900 5.900 9 Si 0.897 3.103 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.285 1.285 13 C 0.033 3.967 14 C 0.108 3.892 15 H 0.088 0.912 16 O -0.542 6.542 17 C -0.112 4.112 18 C -0.039 4.039 19 C 0.248 3.752 20 N -0.433 5.433 21 C -0.141 4.141 22 C -0.153 4.153 23 H 0.060 0.940 24 H 0.042 0.958 25 H 0.058 0.942 26 H 0.018 0.982 27 H 0.055 0.945 28 H -0.014 1.014 29 H 0.036 0.964 30 H 0.260 0.740 31 H 0.086 0.914 32 H 0.025 0.975 33 H 0.372 0.628 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.114 0.886 37 H 0.100 0.900 38 H 0.100 0.900 39 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.079 -4.271 12.068 16.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.078 4.078 3 N -0.248 5.248 4 C 0.064 3.936 5 C -0.538 4.538 6 H 0.081 0.919 7 C -0.148 4.148 8 N -0.540 5.540 9 Si 0.725 3.275 10 H -0.197 1.197 11 H -0.213 1.213 12 H -0.211 1.211 13 C -0.096 4.096 14 C 0.048 3.952 15 H 0.105 0.895 16 O -0.347 6.347 17 C -0.151 4.151 18 C -0.042 4.042 19 C -0.069 4.069 20 N -0.108 5.108 21 C -0.180 4.180 22 C -0.192 4.192 23 H 0.079 0.921 24 H 0.062 0.938 25 H 0.077 0.923 26 H 0.036 0.964 27 H 0.073 0.927 28 H 0.004 0.996 29 H 0.054 0.946 30 H 0.069 0.931 31 H 0.104 0.896 32 H 0.043 0.957 33 H 0.218 0.782 34 H 0.108 0.892 35 H 0.103 0.897 36 H 0.132 0.868 37 H 0.119 0.881 38 H 0.119 0.881 39 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 9.371 -5.831 12.800 16.902 hybrid contribution 0.958 1.302 -1.070 1.939 sum 10.329 -4.528 11.731 16.273 Atomic orbital electron populations 1.21716 0.95475 0.99814 1.02924 1.22006 0.96237 0.91001 0.98523 1.62060 1.14727 1.14076 1.33935 1.19812 0.96424 0.94326 0.83000 1.21187 1.45856 0.90612 0.96189 0.91890 1.24999 0.95604 0.98909 0.95258 1.69967 1.47897 1.35096 1.01064 0.86467 0.77564 0.85464 0.78036 1.19668 1.21251 1.21091 1.22654 0.91151 1.01918 0.93902 1.22002 0.88224 0.94840 0.90134 0.89453 1.86575 1.61792 1.21163 1.65127 1.21965 0.99334 1.02190 0.91579 1.18306 0.94382 0.94528 0.97009 1.27626 0.93131 0.92995 0.93163 1.81218 1.09475 1.11630 1.08487 1.23212 1.00860 0.96514 0.97387 1.23222 0.90833 1.02178 1.02949 0.92078 0.93848 0.92267 0.96367 0.92668 0.99617 0.94560 0.93050 0.89593 0.95693 0.78172 0.89215 0.89747 0.86776 0.88115 0.88138 0.86862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.65 9.99 37.15 0.37 -2.27 16 2 C 0.05 0.98 5.55 -3.83 -0.02 0.96 16 3 N -0.52 -11.21 4.25 -236.08 -1.00 -12.22 16 4 C 0.19 4.88 4.59 -4.97 -0.02 4.86 16 5 C -0.50 -13.71 8.61 -34.44 -0.30 -14.01 16 6 H 0.06 1.69 7.66 -52.49 -0.40 1.29 16 7 C 0.05 1.48 5.46 -17.82 -0.10 1.39 16 8 N -0.90 -26.57 13.29 55.43 0.74 -25.83 16 9 Si 0.90 21.25 29.54 -169.99 -5.02 16.23 16 10 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 11 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 13 C 0.03 0.58 4.45 -3.83 -0.02 0.56 16 14 C 0.11 1.57 2.40 -26.73 -0.06 1.50 16 15 H 0.09 1.43 5.07 -51.93 -0.26 1.16 16 16 O -0.54 -8.47 12.97 -35.23 -0.46 -8.93 16 17 C -0.11 -1.13 5.07 -26.73 -0.14 -1.26 16 18 C -0.04 -0.37 2.14 -157.30 -0.34 -0.71 16 19 C 0.25 3.31 13.22 -20.77 -0.27 3.03 16 20 N -0.43 -6.95 18.53 42.14 0.78 -6.17 16 21 C -0.14 -1.02 9.86 -26.73 -0.26 -1.28 16 22 C -0.15 -1.00 9.93 -26.73 -0.27 -1.26 16 23 H 0.06 1.24 6.52 -51.93 -0.34 0.90 16 24 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 25 H 0.06 1.13 8.14 -51.92 -0.42 0.70 16 26 H 0.02 0.35 8.05 -51.93 -0.42 -0.07 16 27 H 0.05 1.00 5.94 -51.93 -0.31 0.70 16 28 H -0.01 -0.38 8.00 -51.93 -0.42 -0.80 16 29 H 0.04 1.01 6.24 -51.93 -0.32 0.69 16 30 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 31 H 0.09 1.58 7.32 -51.93 -0.38 1.20 16 32 H 0.02 0.43 8.12 -51.93 -0.42 0.01 16 33 H 0.37 4.75 9.05 45.56 0.41 5.16 16 34 H 0.09 0.74 7.90 -51.93 -0.41 0.33 16 35 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.11 0.65 8.05 -51.93 -0.42 0.24 16 37 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 326.22 15.07 4.92 4.92 Total: -1.00 -32.52 326.22 -6.83 -39.35 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -5.36 Total: 1.15 kcal Atomic # 6 Polarization: -7.07 SS G_CDS: -1.42 Total: -8.49 kcal Atomic # 7 Polarization: -44.73 SS G_CDS: 0.51 Total: -44.22 kcal Atomic # 8 Polarization: -8.47 SS G_CDS: -0.46 Total: -8.93 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.52 -6.83 -39.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599307246.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.086 kcal (2) G-P(sol) polarization free energy of solvation -32.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds