Wall clock time and date at job start Mon Mar 30 2020 21:14:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46901 * 110.99648 * 2 1 4 4 C 1.53778 * 113.61314 * 204.99796 * 3 2 1 5 5 C 1.53777 * 87.08363 * 219.93821 * 4 3 2 6 6 C 1.50703 * 113.61652 * 139.98197 * 5 4 3 7 7 O 1.21281 * 119.99837 * 1.53232 * 6 5 4 8 8 N 1.34781 * 120.00021 * 181.52869 * 6 5 4 9 9 C 1.46499 * 119.99786 * 179.97438 * 8 6 5 10 10 C 1.50701 * 109.46992 * 90.00095 * 9 8 6 11 11 H 1.07998 * 120.00129 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99861 * 179.97438 * 10 9 8 13 13 N 1.31510 * 119.99913 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 119.99734 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47432 * 0.02562 * 14 12 10 16 16 H 1.48506 * 109.46890 * 120.00210 * 14 12 10 17 17 H 1.48501 * 109.47062 * 240.00257 * 14 12 10 18 18 C 1.46504 * 119.99832 * 0.02562 * 8 6 5 19 19 C 1.52998 * 117.49530 * 188.74522 * 18 8 6 20 20 C 1.52998 * 117.49860 * 120.08980 * 18 8 6 21 21 C 1.53775 * 87.17260 * 25.39143 * 5 4 3 22 22 H 1.08998 * 109.47043 * 299.99837 * 1 2 3 23 23 H 1.08999 * 109.47386 * 60.00091 * 1 2 3 24 24 H 1.09008 * 109.46881 * 180.02562 * 1 2 3 25 25 H 1.00901 * 111.00259 * 236.04652 * 2 1 3 26 26 H 1.08995 * 112.85150 * 336.19566 * 3 2 1 27 27 H 1.08997 * 113.61779 * 105.38658 * 4 3 2 28 28 H 1.09009 * 113.69245 * 334.49787 * 4 3 2 29 29 H 1.08997 * 113.61285 * 270.80039 * 5 4 3 30 30 H 1.09002 * 109.47391 * 330.00086 * 9 8 6 31 31 H 1.09001 * 109.46813 * 210.00142 * 9 8 6 32 32 H 0.97002 * 119.99768 * 179.97438 * 13 12 10 33 33 H 1.08999 * 115.55047 * 334.41013 * 18 8 6 34 34 H 1.09001 * 117.49915 * 0.02562 * 19 18 8 35 35 H 1.08997 * 117.50007 * 145.01541 * 19 18 8 36 36 H 1.09005 * 117.49679 * 214.98085 * 20 18 8 37 37 H 1.09001 * 117.49656 * 359.96615 * 20 18 8 38 38 H 1.09000 * 113.61677 * 89.16049 * 21 5 4 39 39 H 1.09003 * 113.61583 * 220.05935 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 3.4083 1.4890 -0.5954 5 6 3.7129 2.4942 0.5277 6 6 5.0907 2.3401 1.1186 7 8 5.8480 1.5002 0.6804 8 7 5.4814 3.1358 2.1339 9 6 6.8205 2.9856 2.7086 10 6 7.7863 3.8774 1.9716 11 1 7.4374 4.4945 1.1569 12 6 9.1152 3.9060 2.3381 13 7 9.5400 3.1549 3.3305 14 14 10.3121 5.0119 1.4250 15 1 9.5890 5.7503 0.3586 16 1 10.9149 5.9805 2.3757 17 1 11.3839 4.1845 0.8152 18 6 4.5664 4.1500 2.6635 19 6 5.1312 5.1543 3.6700 20 6 4.1805 4.0510 4.1407 21 6 2.6111 1.7991 1.3447 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8307 -0.5261 -0.7814 26 1 1.2891 2.0959 -0.4054 27 1 3.4269 1.9293 -1.5923 28 1 3.9899 0.5695 -0.5280 29 1 3.4775 3.5258 0.2661 30 1 7.1413 1.9480 2.6164 31 1 6.7976 3.2666 3.7615 32 1 10.4749 3.1748 3.5880 33 1 3.8072 4.5075 1.9678 34 1 6.1837 5.0607 3.9379 35 1 4.7435 6.1725 3.6368 36 1 3.1674 4.3436 4.4169 37 1 4.6069 3.2309 4.7183 38 1 2.9731 0.9640 1.9445 39 1 1.9867 2.4895 1.9120 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693541631.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:14:42 Heat of formation + Delta-G solvation = 15.330262 kcal Electronic energy + Delta-G solvation = -19048.656766 eV Core-core repulsion = 16185.874138 eV Total energy + Delta-G solvation = -2862.782629 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.99024 -37.99738 -36.51240 -33.97961 -33.15672 -31.88316 -28.01117 -26.14924 -25.52691 -24.04429 -22.61733 -21.92573 -21.44854 -19.66513 -17.99211 -17.17261 -16.36285 -15.69884 -15.38838 -15.31898 -14.65891 -14.24180 -14.05552 -13.94491 -13.20194 -13.17037 -12.32667 -12.26187 -12.05765 -11.97713 -11.55337 -11.32924 -11.01468 -10.94286 -10.77268 -10.70230 -10.55350 -10.44751 -10.25849 -10.09927 -10.01178 -9.46429 -8.75655 -8.54273 -8.41427 -7.47029 -6.01735 -4.05915 3.31066 3.37093 3.39665 3.44153 3.86028 4.20386 4.42053 4.48218 4.62402 4.72744 4.96583 4.99951 5.19618 5.24522 5.26885 5.32637 5.35035 5.42566 5.51850 5.59397 5.71009 5.85261 5.93967 6.04282 6.14333 6.20111 6.26151 6.39908 6.48412 6.77670 7.01987 7.10842 7.24504 7.47834 7.59185 7.95200 8.26583 8.48947 8.94373 9.15962 9.58978 11.06146 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.028964 B = 0.005519 C = 0.004992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.492083 B = 5072.445181 C = 5608.002821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.682 5.682 3 C 0.055 3.945 4 C -0.119 4.119 5 C -0.136 4.136 6 C 0.521 3.479 7 O -0.539 6.539 8 N -0.569 5.569 9 C 0.243 3.757 10 C -0.519 4.519 11 H 0.057 0.943 12 C 0.060 3.940 13 N -0.895 5.895 14 Si 0.897 3.103 15 H -0.274 1.274 16 H -0.284 1.284 17 H -0.283 1.283 18 C 0.080 3.920 19 C -0.177 4.177 20 C -0.202 4.202 21 C -0.102 4.102 22 H 0.063 0.937 23 H 0.019 0.981 24 H 0.064 0.936 25 H 0.343 0.657 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.102 0.898 29 H 0.104 0.896 30 H 0.043 0.957 31 H 0.034 0.966 32 H 0.262 0.738 33 H 0.114 0.886 34 H 0.118 0.882 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.406 0.137 -3.496 17.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.313 5.313 3 C -0.055 4.055 4 C -0.158 4.158 5 C -0.158 4.158 6 C 0.308 3.692 7 O -0.417 6.417 8 N -0.298 5.298 9 C 0.124 3.876 10 C -0.558 4.558 11 H 0.076 0.924 12 C -0.142 4.142 13 N -0.535 5.535 14 Si 0.724 3.276 15 H -0.198 1.198 16 H -0.210 1.210 17 H -0.209 1.209 18 C -0.026 4.026 19 C -0.215 4.215 20 C -0.241 4.241 21 C -0.141 4.141 22 H 0.082 0.918 23 H 0.038 0.962 24 H 0.083 0.917 25 H 0.162 0.838 26 H 0.090 0.910 27 H 0.085 0.915 28 H 0.120 0.880 29 H 0.122 0.878 30 H 0.061 0.939 31 H 0.052 0.948 32 H 0.072 0.928 33 H 0.132 0.868 34 H 0.136 0.864 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.112 0.888 38 H 0.110 0.890 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -16.765 -0.447 -2.948 17.028 hybrid contribution 0.537 1.081 -1.282 1.761 sum -16.228 0.633 -4.230 16.782 Atomic orbital electron populations 1.22230 0.88235 1.01595 1.00164 1.60490 1.07415 1.13633 1.49766 1.23114 0.94923 0.89488 0.97969 1.23092 0.94970 1.00599 0.97109 1.22562 0.94278 1.00217 0.98713 1.19995 0.87782 0.81338 0.80072 1.90657 1.54965 1.35568 1.60474 1.47723 1.15757 1.32556 1.33806 1.19292 0.76089 0.98532 0.93663 1.21444 0.93109 1.24200 1.17066 0.92425 1.24928 0.98096 0.95910 0.95217 1.69944 1.15954 1.39509 1.28054 0.86464 0.81044 0.80336 0.79712 1.19824 1.21011 1.20930 1.21448 0.96129 0.94641 0.90410 1.23353 1.01368 0.94086 1.02681 1.23380 0.99761 1.02299 0.98617 1.22941 0.95268 0.99825 0.96023 0.91766 0.96241 0.91678 0.83836 0.90990 0.91458 0.87952 0.87778 0.93939 0.94848 0.92825 0.86794 0.86401 0.89051 0.89101 0.88792 0.88972 0.91345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.54 60.07 0.63 0.87 16 2 N -0.68 -7.49 6.92 -113.04 -0.78 -8.28 16 3 C 0.05 0.63 4.14 -66.81 -0.28 0.36 16 4 C -0.12 -1.64 6.97 -25.92 -0.18 -1.83 16 5 C -0.14 -2.07 2.92 -90.96 -0.27 -2.33 16 6 C 0.52 11.09 7.20 -10.98 -0.08 11.01 16 7 O -0.54 -13.86 15.49 5.56 0.09 -13.78 16 8 N -0.57 -12.30 2.79 -167.47 -0.47 -12.77 16 9 C 0.24 6.42 4.46 -5.19 -0.02 6.39 16 10 C -0.52 -14.77 9.18 -34.44 -0.32 -15.09 16 11 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 12 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 13 N -0.90 -26.71 13.29 55.43 0.74 -25.97 16 14 Si 0.90 22.03 29.54 -169.99 -5.02 17.01 16 15 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 16 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 17 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 18 C 0.08 1.35 5.95 -67.93 -0.40 0.95 16 19 C -0.18 -2.95 9.72 -26.70 -0.26 -3.21 16 20 C -0.20 -3.02 10.13 -26.70 -0.27 -3.29 16 21 C -0.10 -1.34 7.36 -25.83 -0.19 -1.53 16 22 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.02 0.15 8.13 -51.93 -0.42 -0.27 16 24 H 0.06 0.50 8.14 -51.92 -0.42 0.07 16 25 H 0.34 3.44 8.63 -39.29 -0.34 3.10 16 26 H 0.07 0.73 7.87 -51.93 -0.41 0.32 16 27 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.10 1.64 7.45 -51.92 -0.39 1.25 16 29 H 0.10 1.38 7.18 -51.93 -0.37 1.01 16 30 H 0.04 1.28 7.42 -51.93 -0.39 0.89 16 31 H 0.03 0.89 6.32 -51.93 -0.33 0.56 16 32 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 33 H 0.11 1.60 6.58 -51.93 -0.34 1.26 16 34 H 0.12 2.39 6.29 -51.93 -0.33 2.06 16 35 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.09 1.55 8.12 -51.93 -0.42 1.13 16 38 H 0.09 1.42 8.09 -51.93 -0.42 1.00 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 320.44 15.07 4.83 4.83 Total: -1.00 -32.56 320.44 -8.58 -41.15 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -6.23 Total: 3.88 kcal Atomic # 6 Polarization: -4.34 SS G_CDS: -1.73 Total: -6.07 kcal Atomic # 7 Polarization: -46.51 SS G_CDS: -0.51 Total: -47.02 kcal Atomic # 8 Polarization: -13.86 SS G_CDS: 0.09 Total: -13.78 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.56 -8.58 -41.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693541631.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.479 kcal (2) G-P(sol) polarization free energy of solvation -32.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds