Wall clock time and date at job start Mon Mar 30 2020 21:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47011 * 2 1 4 4 C 1.50701 * 109.47000 * 239.99279 * 2 1 3 5 5 H 1.08002 * 119.99761 * 239.99828 * 4 2 1 6 6 C 1.37871 * 119.99694 * 60.28391 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48494 * 109.47230 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.47301 * 119.99669 * 8 6 4 11 11 H 1.48498 * 109.47430 * 239.99516 * 8 6 4 12 12 N 1.46499 * 109.46437 * 119.99604 * 2 1 3 13 13 C 1.34776 * 120.00348 * 274.99648 * 12 2 1 14 14 O 1.21284 * 119.99546 * 359.97438 * 13 12 2 15 15 C 1.50696 * 120.00271 * 180.02562 * 13 12 2 16 16 N 1.46900 * 112.82552 * 23.90779 * 15 13 12 17 17 C 1.53956 * 113.57442 * 252.71886 * 15 13 12 18 18 C 1.52916 * 86.77995 * 220.66289 * 17 15 13 19 19 C 1.52911 * 121.13554 * 150.62530 * 18 17 15 20 20 C 1.53948 * 86.78389 * 100.81931 * 19 18 17 21 21 C 1.52915 * 121.13448 * 259.18212 * 18 17 15 22 22 C 1.52908 * 88.04176 * 24.90162 * 18 17 15 23 23 H 1.08995 * 109.47438 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47069 * 300.00816 * 1 2 3 25 25 H 1.09004 * 109.46658 * 60.00195 * 1 2 3 26 26 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 27 27 H 0.97000 * 119.99954 * 95.00750 * 12 2 1 28 28 H 1.00889 * 110.99818 * 309.66920 * 16 15 13 29 29 H 1.00894 * 110.99670 * 73.62710 * 16 15 13 30 30 H 1.08998 * 113.66596 * 335.13174 * 17 15 13 31 31 H 1.09004 * 113.66107 * 106.19418 * 17 15 13 32 32 H 1.08998 * 113.65814 * 215.29372 * 19 18 17 33 33 H 1.09003 * 113.66304 * 346.34181 * 19 18 17 34 34 H 1.09000 * 113.57388 * 270.12450 * 20 19 18 35 35 H 1.08999 * 113.65339 * 139.34971 * 20 19 18 36 36 H 1.08999 * 113.66303 * 13.64931 * 21 18 17 37 37 H 1.08999 * 113.65954 * 144.71259 * 21 18 17 38 38 H 1.08999 * 113.66010 * 220.62778 * 22 18 17 39 39 H 1.08996 * 113.74805 * 89.58919 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7106 -1.2304 5 1 2.6533 -1.5887 -1.1311 6 6 1.7041 -0.2362 -2.4826 7 7 0.9480 0.8330 -2.6035 8 14 2.3331 -1.1125 -4.0077 9 1 3.1574 -2.2796 -3.6035 10 1 1.1815 -1.5775 -4.8219 11 1 3.1609 -0.1766 -4.8103 12 7 2.0182 -0.6906 1.1963 13 6 2.1469 -0.0182 2.3572 14 8 1.8591 1.1587 2.4114 15 6 2.6496 -0.7284 3.5876 16 7 3.4569 -1.9142 3.2712 17 6 1.5552 -0.9888 4.6386 18 6 2.5963 -0.6071 5.6915 19 6 2.1818 0.0267 7.0199 20 6 2.3611 -1.3698 7.6427 21 6 3.3385 -1.6767 6.4936 22 6 3.3097 0.2102 4.6140 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 0.7173 1.1669 -3.4844 27 1 2.2490 -1.6317 1.1528 28 1 2.9788 -2.5123 2.6143 29 1 4.3667 -1.6501 2.9240 30 1 0.7177 -0.2937 4.5795 31 1 1.2398 -2.0308 4.6928 32 1 2.8911 0.7660 7.3920 33 1 1.1515 0.3824 7.0323 34 1 1.4561 -1.9769 7.6193 35 1 2.8338 -1.3532 8.6247 36 1 3.2322 -2.6819 6.0856 37 1 4.3729 -1.4162 6.7179 38 1 4.3959 0.1260 4.6485 39 1 2.9666 1.2426 4.5469 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000694633045.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:14:46 Heat of formation + Delta-G solvation = -2.242668 kcal Electronic energy + Delta-G solvation = -19117.655062 eV Core-core repulsion = 16254.110414 eV Total energy + Delta-G solvation = -2863.544648 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.81703 -38.45896 -35.33511 -34.78631 -32.49380 -30.80534 -28.79045 -25.84684 -25.62720 -25.30535 -24.47589 -22.09107 -20.28576 -19.02519 -17.83790 -17.40748 -15.95891 -15.83823 -15.46715 -15.06039 -15.00017 -14.38669 -13.95007 -13.58406 -13.13549 -12.73668 -12.57955 -12.37698 -12.05232 -11.79736 -11.60727 -11.15146 -11.06210 -11.01611 -10.82381 -10.60742 -10.36500 -10.28550 -10.19474 -10.05930 -9.94349 -9.79804 -9.08524 -8.60602 -8.25211 -7.95788 -6.16128 -4.26061 3.20633 3.26772 3.28899 3.31196 3.97618 4.31233 4.42927 4.48290 4.64639 4.74936 4.85508 4.88247 5.01319 5.16225 5.45827 5.59146 5.68715 5.76053 5.84838 5.92662 5.97743 6.00712 6.05536 6.13487 6.30848 6.43758 6.59328 6.77925 6.92060 7.05468 7.12351 7.37939 7.41705 7.52635 7.65612 7.87338 8.10942 8.61274 8.73904 9.06937 9.41883 10.89783 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.047407 B = 0.004683 C = 0.004476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.493332 B = 5977.061007 C = 6254.024386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.263 3.737 3 H 0.047 0.953 4 C -0.535 4.535 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.902 3.098 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.283 1.283 12 N -0.710 5.710 13 C 0.482 3.518 14 O -0.552 6.552 15 C 0.071 3.929 16 N -0.814 5.814 17 C -0.086 4.086 18 C -0.089 4.089 19 C -0.131 4.131 20 C -0.143 4.143 21 C -0.103 4.103 22 C -0.100 4.100 23 H 0.026 0.974 24 H 0.014 0.986 25 H 0.090 0.910 26 H 0.264 0.736 27 H 0.383 0.617 28 H 0.343 0.657 29 H 0.347 0.653 30 H 0.089 0.911 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.065 0.935 34 H 0.076 0.924 35 H 0.062 0.938 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.592 -5.801 15.307 16.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.162 3.838 3 H 0.065 0.935 4 C -0.573 4.573 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.729 3.271 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.208 1.208 12 N -0.358 5.358 13 C 0.265 3.735 14 O -0.430 6.430 15 C -0.026 4.026 16 N -0.347 5.347 17 C -0.124 4.124 18 C -0.089 4.089 19 C -0.168 4.168 20 C -0.181 4.181 21 C -0.140 4.140 22 C -0.138 4.138 23 H 0.045 0.955 24 H 0.033 0.967 25 H 0.108 0.892 26 H 0.074 0.926 27 H 0.216 0.784 28 H 0.158 0.842 29 H 0.161 0.839 30 H 0.107 0.893 31 H 0.095 0.905 32 H 0.098 0.902 33 H 0.084 0.916 34 H 0.095 0.905 35 H 0.080 0.920 36 H 0.092 0.908 37 H 0.096 0.904 38 H 0.089 0.911 39 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 3.222 -4.997 15.926 17.000 hybrid contribution 0.351 -0.529 -2.085 2.180 sum 3.573 -5.526 13.841 15.326 Atomic orbital electron populations 1.22065 0.98454 0.99075 1.00861 1.18748 0.91068 0.93929 0.80087 0.93488 1.21237 1.32567 1.13127 0.90365 0.92138 1.24894 0.94779 0.94924 0.99096 1.69912 1.35883 1.22388 1.23820 0.86388 0.78644 0.79492 0.82540 1.19742 1.20819 1.20850 1.46593 1.65052 1.13294 1.10856 1.21268 0.79016 0.87883 0.85350 1.90633 1.51322 1.16056 1.84961 1.22233 0.96670 0.91435 0.92224 1.58710 1.06585 1.17033 1.52323 1.22596 0.95252 1.02047 0.92528 1.22194 0.97359 0.97244 0.92082 1.22787 1.01447 0.96528 0.96044 1.22849 0.99948 0.97431 0.97828 1.22516 0.97689 0.98903 0.94920 1.22799 0.99511 0.98513 0.92950 0.95494 0.96716 0.89167 0.92588 0.78397 0.84236 0.83910 0.89265 0.90535 0.90174 0.91585 0.90523 0.91971 0.90759 0.90423 0.91096 0.88313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.67 9.26 37.16 0.34 -3.33 16 2 C 0.26 6.74 2.56 -69.08 -0.18 6.57 16 3 H 0.05 1.40 7.58 -51.93 -0.39 1.01 16 4 C -0.53 -14.14 8.72 -34.44 -0.30 -14.44 16 5 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 6 C 0.07 1.79 5.31 -17.82 -0.09 1.69 16 7 N -0.88 -24.92 11.33 55.43 0.63 -24.29 16 8 Si 0.90 20.57 29.54 -169.99 -5.02 15.55 16 9 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 10 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 N -0.71 -14.68 5.01 -54.93 -0.28 -14.96 16 13 C 0.48 9.64 7.10 -10.99 -0.08 9.56 16 14 O -0.55 -13.32 15.72 5.55 0.09 -13.23 16 15 C 0.07 1.05 1.55 -131.77 -0.20 0.85 16 16 N -0.81 -9.96 9.09 0.61 0.01 -9.96 16 17 C -0.09 -1.17 7.19 -26.28 -0.19 -1.36 16 18 C -0.09 -1.06 1.04 -154.71 -0.16 -1.22 16 19 C -0.13 -1.38 7.84 -26.28 -0.21 -1.59 16 20 C -0.14 -1.35 8.08 -25.75 -0.21 -1.56 16 21 C -0.10 -1.07 7.80 -26.28 -0.21 -1.27 16 22 C -0.10 -1.39 7.10 -26.28 -0.19 -1.57 16 23 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 24 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 25 H 0.09 2.46 6.08 -51.93 -0.32 2.15 16 26 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 27 H 0.38 6.83 6.72 -40.82 -0.27 6.56 16 28 H 0.34 4.04 7.31 -39.30 -0.29 3.75 16 29 H 0.35 4.07 9.07 -39.29 -0.36 3.71 16 30 H 0.09 1.32 8.09 -51.93 -0.42 0.90 16 31 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.10 1.56 7.38 -51.93 -0.38 1.17 16 LS Contribution 315.26 15.07 4.75 4.75 Total: -1.00 -29.86 315.26 -7.69 -37.55 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: -6.20 Total: 12.27 kcal Atomic # 6 Polarization: -6.01 SS G_CDS: -1.66 Total: -7.68 kcal Atomic # 7 Polarization: -49.56 SS G_CDS: 0.36 Total: -49.21 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: 0.09 Total: -13.23 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -29.86 -7.69 -37.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694633045.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.305 kcal (2) G-P(sol) polarization free energy of solvation -29.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds