Wall clock time and date at job start Mon Mar 30 2020 21:16:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46906 * 109.47263 * 2 1 4 4 C 1.50704 * 109.47085 * 119.99383 * 2 1 3 5 5 H 1.08009 * 119.99578 * 120.00052 * 4 2 1 6 6 C 1.37872 * 120.00290 * 300.00282 * 4 2 1 7 7 N 1.31514 * 119.99957 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00067 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47268 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.47037 * 119.99765 * 8 6 4 11 11 H 1.48499 * 109.47191 * 239.99937 * 8 6 4 12 12 C 1.50700 * 109.47337 * 239.99786 * 2 1 3 13 13 C 1.37968 * 120.04754 * 0.57823 * 12 2 1 14 14 C 1.38314 * 120.17843 * 180.27566 * 13 12 2 15 15 C 1.38600 * 120.27567 * 0.02562 * 14 13 12 16 16 F 1.35104 * 119.94709 * 180.02562 * 15 14 13 17 17 C 1.38150 * 120.09908 * 359.97438 * 15 14 13 18 18 C 1.39601 * 120.05120 * 180.86280 * 12 2 1 19 19 C 1.47732 * 120.13817 * 359.69477 * 18 12 2 20 20 O 1.21474 * 120.00002 * 5.90958 * 19 18 12 21 21 O 1.34715 * 120.00328 * 185.90785 * 19 18 12 22 22 H 1.09003 * 109.47109 * 176.44648 * 1 2 3 23 23 H 1.08998 * 109.47312 * 296.44472 * 1 2 3 24 24 H 1.09000 * 109.47045 * 56.44452 * 1 2 3 25 25 H 1.00904 * 110.99975 * 201.04438 * 3 2 1 26 26 H 1.00897 * 110.99224 * 324.98746 * 3 2 1 27 27 H 0.97001 * 120.00199 * 179.97438 * 7 6 4 28 28 H 1.08000 * 119.91466 * 0.27646 * 13 12 2 29 29 H 1.08000 * 119.85881 * 179.97438 * 14 13 12 30 30 H 1.08003 * 120.08934 * 180.02562 * 17 15 14 31 31 H 0.96691 * 117.00530 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5885 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 0.9435 0.8303 2.6034 8 14 2.3213 -1.1201 4.0080 9 1 3.1464 -2.2868 3.6040 10 1 3.1465 -0.1870 4.8165 11 1 1.1660 -1.5864 4.8162 12 6 2.0323 -0.7104 -1.2304 13 6 1.1367 -1.2248 -2.1453 14 6 1.5948 -1.8823 -3.2726 15 6 2.9555 -2.0297 -3.4911 16 9 3.3956 -2.6727 -4.5948 17 6 3.8624 -1.5192 -2.5825 18 6 3.4045 -0.8544 -1.4433 19 6 4.3681 -0.3053 -0.4674 20 8 3.9698 0.1772 0.5739 21 8 5.6885 -0.3397 -0.7321 22 1 -0.3633 -1.0257 -0.0637 23 1 -0.3634 0.4576 0.9201 24 1 -0.3633 0.5680 -0.8564 25 1 2.9691 1.4329 -0.3383 26 1 1.4127 1.9830 -0.5405 27 1 0.7088 1.1616 3.4843 28 1 0.0751 -1.1136 -1.9807 29 1 0.8891 -2.2832 -3.9851 30 1 4.9226 -1.6337 -2.7531 31 1 6.2802 0.0312 -0.0633 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687769310.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:16:22 Heat of formation + Delta-G solvation = -69.748406 kcal Electronic energy + Delta-G solvation = -19316.520446 eV Core-core repulsion = 16093.036468 eV Total energy + Delta-G solvation = -3223.483978 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 253.090 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -48.63961 -40.10547 -38.10619 -35.84100 -34.59116 -31.57178 -31.20695 -29.24680 -27.25592 -25.32679 -24.19553 -22.62544 -20.75648 -19.39679 -17.80723 -16.99434 -16.31361 -15.76447 -15.37941 -15.35997 -15.18597 -15.05496 -14.17018 -13.76528 -13.55787 -13.10719 -12.86636 -12.47850 -12.08466 -11.78989 -11.34741 -11.16096 -10.97132 -10.77689 -10.57506 -10.24112 -10.05025 -9.85134 -9.43209 -9.12738 -8.79957 -8.16647 -8.12087 -6.94937 -5.72866 -3.69706 1.07453 1.55225 3.16974 3.38914 3.46867 3.49560 3.63213 4.12818 4.51775 4.59131 5.06083 5.10511 5.45185 5.52597 5.60831 5.90436 6.11851 6.21845 6.27509 6.41159 6.53155 6.67666 6.73337 7.03022 7.14696 7.20580 7.23163 7.83142 8.05358 8.32244 8.65686 8.78238 9.03749 9.21121 9.78910 11.29268 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.025206 B = 0.008798 C = 0.007665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.566019 B = 3181.734993 C = 3651.956335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.276 3.724 3 N -0.789 5.789 4 C -0.453 4.453 5 H 0.043 0.957 6 C 0.084 3.916 7 N -0.851 5.851 8 Si 0.881 3.119 9 H -0.279 1.279 10 H -0.287 1.287 11 H -0.289 1.289 12 C -0.031 4.031 13 C -0.109 4.109 14 C -0.129 4.129 15 C 0.059 3.941 16 F -0.147 7.147 17 C -0.109 4.109 18 C -0.084 4.084 19 C 0.456 3.544 20 O -0.388 6.388 21 O -0.538 6.538 22 H 0.036 0.964 23 H 0.100 0.900 24 H 0.012 0.988 25 H 0.315 0.685 26 H 0.295 0.705 27 H 0.251 0.749 28 H 0.143 0.857 29 H 0.131 0.869 30 H 0.140 0.860 31 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.062 -2.566 -9.675 10.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.185 3.815 3 N -0.320 5.320 4 C -0.492 4.492 5 H 0.062 0.938 6 C -0.120 4.120 7 N -0.489 5.489 8 Si 0.710 3.290 9 H -0.204 1.204 10 H -0.213 1.213 11 H -0.215 1.215 12 C -0.034 4.034 13 C -0.128 4.128 14 C -0.148 4.148 15 C 0.039 3.961 16 F -0.126 7.126 17 C -0.129 4.129 18 C -0.086 4.086 19 C 0.296 3.704 20 O -0.269 6.269 21 O -0.351 6.351 22 H 0.055 0.945 23 H 0.118 0.882 24 H 0.031 0.969 25 H 0.132 0.868 26 H 0.106 0.894 27 H 0.061 0.939 28 H 0.161 0.839 29 H 0.149 0.851 30 H 0.157 0.843 31 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 2.503 -2.489 -8.744 9.430 hybrid contribution 1.104 -0.663 -0.019 1.288 sum 3.607 -3.152 -8.763 9.987 Atomic orbital electron populations 1.22021 0.96863 0.98994 1.01951 1.17670 0.91673 0.85302 0.86837 1.59343 1.04105 1.07928 1.60613 1.20489 1.30079 1.09432 0.89155 0.93839 1.24668 0.95015 0.94514 0.97846 1.69945 1.35468 1.21578 1.21874 0.86743 0.78511 0.79547 0.84200 1.20418 1.21316 1.21512 1.22038 0.90857 0.93256 0.97281 1.21175 1.01039 0.97808 0.92732 1.21338 0.93570 1.00624 0.99302 1.17457 0.92722 1.00106 0.85771 1.91456 1.90262 1.79808 1.51090 1.21317 1.00088 0.98093 0.93358 1.18753 0.92526 1.03044 0.94282 1.20980 0.80792 0.81928 0.86669 1.91425 1.76782 1.35411 1.23263 1.84502 1.19312 1.79094 1.52222 0.94544 0.88197 0.96939 0.86798 0.89448 0.93878 0.83948 0.85069 0.84263 0.73937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 7.02 37.15 0.26 -2.83 16 2 C 0.28 6.38 0.60 -133.90 -0.08 6.30 16 3 N -0.79 -18.33 7.83 -1.14 -0.01 -18.34 16 4 C -0.45 -12.00 4.79 -34.44 -0.16 -12.17 16 5 H 0.04 1.20 7.11 -52.48 -0.37 0.83 16 6 C 0.08 2.29 5.23 -17.82 -0.09 2.20 16 7 N -0.85 -23.84 10.78 55.43 0.60 -23.24 16 8 Si 0.88 21.80 29.54 -169.99 -5.02 16.78 16 9 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 10 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 12 C -0.03 -0.62 4.91 -104.21 -0.51 -1.13 16 13 C -0.11 -1.85 8.97 -39.65 -0.36 -2.21 16 14 C -0.13 -1.95 10.02 -39.42 -0.39 -2.34 16 15 C 0.06 0.93 7.29 -39.48 -0.29 0.64 16 16 F -0.15 -2.25 17.26 2.25 0.04 -2.21 16 17 C -0.11 -1.82 9.59 -39.10 -0.38 -2.20 16 18 C -0.08 -1.61 5.50 -104.99 -0.58 -2.19 16 19 C 0.46 8.93 6.98 34.61 0.24 9.17 16 20 O -0.39 -9.03 10.25 -19.25 -0.20 -9.23 16 21 O -0.54 -8.32 12.70 -40.53 -0.51 -8.83 16 22 H 0.04 0.75 7.32 -51.93 -0.38 0.37 16 23 H 0.10 2.51 5.98 -51.93 -0.31 2.20 16 24 H 0.01 0.23 7.62 -51.93 -0.40 -0.17 16 25 H 0.32 7.07 5.38 -39.29 -0.21 6.86 16 26 H 0.29 6.31 8.62 -39.29 -0.34 5.97 16 27 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 28 H 0.14 2.23 5.89 -52.49 -0.31 1.92 16 29 H 0.13 1.58 8.06 -52.49 -0.42 1.16 16 30 H 0.14 2.09 7.63 -52.48 -0.40 1.69 16 31 H 0.40 4.54 9.11 45.56 0.42 4.96 16 LS Contribution 261.61 15.07 3.94 3.94 Total: -1.00 -30.18 261.61 -5.36 -35.54 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -1.86 Total: 12.34 kcal Atomic # 6 Polarization: -4.41 SS G_CDS: -2.34 Total: -6.75 kcal Atomic # 7 Polarization: -42.17 SS G_CDS: 0.59 Total: -41.58 kcal Atomic # 8 Polarization: -17.35 SS G_CDS: -0.71 Total: -18.07 kcal Atomic # 9 Polarization: -2.25 SS G_CDS: 0.04 Total: -2.21 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -30.18 -5.36 -35.54 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687769310.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.203 kcal (2) G-P(sol) polarization free energy of solvation -30.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds