Wall clock time and date at job start Mon Mar 30 2020 21:15:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.42896 * 113.99578 * 2 1 4 4 H 1.08994 * 110.29038 * 27.87460 * 3 2 1 5 5 C 1.54376 * 110.32306 * 265.63065 * 3 2 1 6 6 N 1.48563 * 104.59526 * 217.25383 * 5 3 2 7 7 C 1.48552 * 104.22322 * 39.48688 * 6 5 3 8 8 C 1.54267 * 110.31966 * 149.99797 * 3 2 1 9 9 H 1.09003 * 110.32004 * 237.88885 * 8 3 2 10 10 C 1.50690 * 110.32584 * 359.97438 * 8 3 2 11 11 O 1.21302 * 120.00055 * 89.80394 * 10 8 3 12 12 N 1.34779 * 120.00232 * 269.80029 * 10 8 3 13 13 C 1.37102 * 120.00133 * 179.97438 * 12 10 8 14 14 H 1.08002 * 119.99764 * 39.87342 * 13 12 10 15 15 C 1.38949 * 119.99948 * 219.87224 * 13 12 10 16 16 N 1.31410 * 120.00138 * 24.39437 * 15 13 12 17 17 Si 1.86799 * 119.99864 * 204.39769 * 15 13 12 18 18 H 1.48504 * 109.47122 * 59.99862 * 17 15 13 19 19 H 1.48500 * 109.47224 * 300.00355 * 17 15 13 20 20 H 1.48497 * 109.47284 * 179.97438 * 17 15 13 21 21 C 1.46500 * 119.99909 * 0.02562 * 12 10 8 22 22 C 1.47202 * 109.46907 * 275.29161 * 21 12 10 23 23 N 5.73320 * 119.68241 * 66.81047 * 2 1 3 24 24 H 1.08996 * 109.46979 * 60.00271 * 1 2 3 25 25 H 1.09000 * 109.46510 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47321 * 300.00156 * 1 2 3 27 27 H 1.09001 * 110.41601 * 336.03288 * 5 3 2 28 28 H 1.09004 * 110.40926 * 98.47889 * 5 3 2 29 29 H 1.00893 * 111.00067 * 279.92608 * 6 5 3 30 30 H 1.09000 * 110.41369 * 201.73671 * 7 6 5 31 31 H 1.09002 * 110.41328 * 79.29013 * 7 6 5 32 32 H 0.97004 * 119.99740 * 5.76926 * 16 15 13 33 33 H 1.09002 * 109.47110 * 35.29119 * 21 12 10 34 34 H 1.08996 * 109.47272 * 155.28638 * 21 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3383 2.0183 0.4780 5 6 2.3290 1.7504 -1.4434 6 7 3.6078 2.4981 -1.3309 7 6 4.3999 1.7201 -0.3440 8 6 3.3726 1.2854 0.7234 9 1 3.3693 1.9885 1.5563 10 6 3.6839 -0.1047 1.2147 11 8 4.2859 -0.8795 0.5015 12 7 3.2935 -0.4872 2.4467 13 6 3.5763 -1.7522 2.8936 14 1 4.5332 -2.2016 2.6725 15 6 2.6319 -2.4559 3.6308 16 7 1.3556 -2.1672 3.5098 17 14 3.1765 -3.8123 4.7940 18 1 4.0860 -3.2467 5.8227 19 1 3.8902 -4.8649 4.0273 20 1 1.9864 -4.4032 5.4571 21 6 2.5660 0.4483 3.3080 22 6 3.5262 1.3033 4.0248 23 7 4.2681 1.9614 4.5785 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 2.4521 0.8820 -2.0906 28 1 1.5409 2.4004 -1.8237 29 1 3.4487 3.4397 -1.0052 30 1 5.1710 2.3470 0.1037 31 1 4.8470 0.8468 -0.8190 32 1 1.0651 -1.5221 2.8461 33 1 1.9111 1.0700 2.6975 34 1 1.9687 -0.1105 4.0284 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000690155152.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:15:11 Heat of formation + Delta-G solvation = -31.069957 kcal Electronic energy + Delta-G solvation = -19787.129961 eV Core-core repulsion = 16721.076262 eV Total energy + Delta-G solvation = -3066.053699 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.121 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.98012 -37.89916 -36.35105 -35.95745 -34.71579 -31.85924 -29.75194 -28.37453 -27.60621 -26.03398 -24.57077 -22.04553 -21.43619 -19.01012 -18.08974 -17.50254 -16.74530 -16.31685 -15.60179 -15.32771 -14.75608 -14.39615 -13.96697 -13.56969 -13.44736 -13.37992 -13.30031 -12.86015 -12.44694 -12.05388 -11.89846 -11.69084 -11.51389 -11.24575 -11.21962 -10.87417 -10.81212 -10.60691 -10.23440 -9.97155 -9.61052 -9.02799 -8.75351 -8.42147 -7.94761 -6.68311 -4.11809 3.06357 3.21886 3.29312 3.35471 3.53567 3.60266 3.88408 4.18810 4.31937 4.51529 4.60249 4.85137 4.95701 5.01638 5.24370 5.34187 5.44052 5.45462 5.50357 5.59532 5.64018 5.77431 5.94833 6.00470 6.04843 6.14407 6.36205 6.59846 7.33060 7.43950 7.83526 7.99260 8.03198 8.53930 8.80067 9.24183 9.71098 10.58376 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.022580 B = 0.008593 C = 0.007634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.760090 B = 3257.700519 C = 3667.154415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.354 6.354 3 C 0.068 3.932 4 H 0.067 0.933 5 C 0.023 3.977 6 N -0.661 5.661 7 C 0.054 3.946 8 C -0.153 4.153 9 H 0.085 0.915 10 C 0.505 3.495 11 O -0.547 6.547 12 N -0.449 5.449 13 C -0.395 4.395 14 H 0.084 0.916 15 C 0.013 3.987 16 N -0.875 5.875 17 Si 1.070 2.930 18 H -0.285 1.285 19 H -0.282 1.282 20 H -0.279 1.279 21 C 0.185 3.815 22 C 0.204 3.796 23 N -0.453 5.453 24 H 0.035 0.965 25 H 0.088 0.912 26 H 0.040 0.960 27 H 0.093 0.907 28 H 0.074 0.926 29 H 0.332 0.668 30 H 0.074 0.926 31 H 0.105 0.895 32 H 0.277 0.723 33 H 0.093 0.907 34 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.577 7.955 -4.687 10.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.271 6.271 3 C 0.007 3.993 4 H 0.085 0.915 5 C -0.107 4.107 6 N -0.288 5.288 7 C -0.075 4.075 8 C -0.177 4.177 9 H 0.103 0.897 10 C 0.293 3.707 11 O -0.426 6.426 12 N -0.170 5.170 13 C -0.523 4.523 14 H 0.102 0.898 15 C -0.195 4.195 16 N -0.509 5.509 17 Si 0.896 3.104 18 H -0.211 1.211 19 H -0.208 1.208 20 H -0.204 1.204 21 C 0.058 3.942 22 C -0.114 4.114 23 N -0.133 5.133 24 H 0.053 0.947 25 H 0.106 0.894 26 H 0.059 0.941 27 H 0.111 0.889 28 H 0.092 0.908 29 H 0.146 0.854 30 H 0.092 0.908 31 H 0.123 0.877 32 H 0.088 0.912 33 H 0.110 0.890 34 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -3.282 7.009 -3.758 8.603 hybrid contribution -0.571 1.379 -0.305 1.524 sum -3.853 8.388 -4.063 10.085 Atomic orbital electron populations 1.22787 0.81422 1.03140 0.99097 1.88220 1.19111 1.25160 1.94644 1.23438 0.93383 0.86250 0.96199 0.91516 1.23548 0.91459 0.99331 0.96406 1.63319 1.14267 1.04804 1.46370 1.23033 0.94953 0.99207 0.90330 1.22852 0.96512 0.98660 0.99644 0.89671 1.19613 0.82343 0.87493 0.81272 1.90529 1.42879 1.54385 1.54787 1.43274 1.52725 1.11049 1.10002 1.20215 1.03072 0.90958 1.38019 0.89799 1.26386 0.92802 1.00636 0.99638 1.70776 1.14579 1.31483 1.34077 0.83476 0.75765 0.75296 0.75863 1.21094 1.20779 1.20368 1.19190 0.90227 0.89857 0.94976 1.30477 0.94748 0.92954 0.93247 1.81031 1.09819 1.11852 1.10563 0.94678 0.89377 0.94128 0.88851 0.90779 0.85362 0.90793 0.87726 0.91240 0.88955 0.85005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.85 101.05 1.10 1.54 16 2 O -0.35 -6.39 8.90 -35.23 -0.31 -6.71 16 3 C 0.07 1.02 3.05 -25.35 -0.08 0.95 16 4 H 0.07 0.82 7.81 -51.93 -0.41 0.42 16 5 C 0.02 0.31 7.21 -2.18 -0.02 0.29 16 6 N -0.66 -8.91 7.62 -109.66 -0.84 -9.74 16 7 C 0.05 0.88 6.96 -2.18 -0.02 0.86 16 8 C -0.15 -2.66 2.51 -90.39 -0.23 -2.88 16 9 H 0.09 1.36 6.14 -51.93 -0.32 1.04 16 10 C 0.51 11.63 5.44 -10.99 -0.06 11.57 16 11 O -0.55 -14.78 15.53 5.54 0.09 -14.69 16 12 N -0.45 -10.54 2.23 -117.93 -0.26 -10.81 16 13 C -0.40 -10.51 8.79 -14.93 -0.13 -10.64 16 14 H 0.08 2.41 7.84 -52.49 -0.41 2.00 16 15 C 0.01 0.32 4.79 -17.47 -0.08 0.24 16 16 N -0.87 -22.43 12.33 55.50 0.68 -21.75 16 17 Si 1.07 23.08 29.98 -169.99 -5.10 17.98 16 18 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 19 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 20 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 21 C 0.19 3.61 4.58 -6.83 -0.03 3.58 16 22 C 0.20 4.02 14.77 -20.77 -0.31 3.71 16 23 N -0.45 -9.35 18.54 42.15 0.78 -8.57 16 24 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 26 H 0.04 0.51 8.10 -51.93 -0.42 0.09 16 27 H 0.09 1.44 8.08 -51.93 -0.42 1.02 16 28 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.33 3.62 8.92 -39.30 -0.35 3.27 16 30 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 31 H 0.10 2.01 6.84 -51.93 -0.36 1.65 16 32 H 0.28 6.97 7.30 -40.82 -0.30 6.67 16 33 H 0.09 1.50 6.50 -51.93 -0.34 1.16 16 34 H 0.13 2.73 5.81 -51.93 -0.30 2.43 16 LS Contribution 291.32 15.07 4.39 4.39 Total: -1.00 -31.31 291.32 -4.53 -35.84 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -4.11 Total: 4.85 kcal Atomic # 6 Polarization: 9.06 SS G_CDS: 0.15 Total: 9.21 kcal Atomic # 7 Polarization: -51.24 SS G_CDS: 0.37 Total: -50.87 kcal Atomic # 8 Polarization: -21.17 SS G_CDS: -0.23 Total: -21.40 kcal Atomic # 14 Polarization: 23.08 SS G_CDS: -5.10 Total: 17.98 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -31.31 -4.53 -35.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690155152.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.770 kcal (2) G-P(sol) polarization free energy of solvation -31.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds