Wall clock time and date at job start Mon Mar 30 2020 21:15:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.42896 * 113.99578 * 2 1 4 4 H 1.08994 * 110.29038 * 27.87460 * 3 2 1 5 5 C 1.54376 * 110.32306 * 265.63065 * 3 2 1 6 6 N 1.48563 * 104.59526 * 217.25383 * 5 3 2 7 7 C 1.48552 * 104.22322 * 39.48688 * 6 5 3 8 8 C 1.54267 * 110.31966 * 149.99797 * 3 2 1 9 9 H 1.09003 * 110.32004 * 237.88885 * 8 3 2 10 10 C 1.50690 * 110.32584 * 359.97438 * 8 3 2 11 11 O 1.21302 * 120.00055 * 89.80394 * 10 8 3 12 12 N 1.34779 * 120.00232 * 269.80029 * 10 8 3 13 13 C 1.37102 * 120.00133 * 179.97438 * 12 10 8 14 14 H 1.08002 * 119.99764 * 39.87342 * 13 12 10 15 15 C 1.38949 * 119.99948 * 219.87224 * 13 12 10 16 16 N 1.31410 * 120.00138 * 24.39437 * 15 13 12 17 17 Si 1.86799 * 119.99864 * 204.39769 * 15 13 12 18 18 H 1.48504 * 109.47122 * 59.99862 * 17 15 13 19 19 H 1.48500 * 109.47224 * 300.00355 * 17 15 13 20 20 H 1.48497 * 109.47284 * 179.97438 * 17 15 13 21 21 C 1.46500 * 119.99909 * 0.02562 * 12 10 8 22 22 C 1.47202 * 109.46907 * 275.29161 * 21 12 10 23 23 N 5.73320 * 119.68241 * 66.81047 * 2 1 3 24 24 H 1.08996 * 109.46979 * 60.00271 * 1 2 3 25 25 H 1.09000 * 109.46510 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47321 * 300.00156 * 1 2 3 27 27 H 1.09001 * 110.41601 * 336.03288 * 5 3 2 28 28 H 1.09004 * 110.40926 * 98.47889 * 5 3 2 29 29 H 1.00893 * 111.00067 * 279.92608 * 6 5 3 30 30 H 1.09000 * 110.41369 * 201.73671 * 7 6 5 31 31 H 1.09002 * 110.41328 * 79.29013 * 7 6 5 32 32 H 0.97004 * 119.99740 * 5.76926 * 16 15 13 33 33 H 1.09002 * 109.47110 * 35.29119 * 21 12 10 34 34 H 1.08996 * 109.47272 * 155.28638 * 21 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3383 2.0183 0.4780 5 6 2.3290 1.7504 -1.4434 6 7 3.6078 2.4981 -1.3309 7 6 4.3999 1.7201 -0.3440 8 6 3.3726 1.2854 0.7234 9 1 3.3693 1.9885 1.5563 10 6 3.6839 -0.1047 1.2147 11 8 4.2859 -0.8795 0.5015 12 7 3.2935 -0.4872 2.4467 13 6 3.5763 -1.7522 2.8936 14 1 4.5332 -2.2016 2.6725 15 6 2.6319 -2.4559 3.6308 16 7 1.3556 -2.1672 3.5098 17 14 3.1765 -3.8123 4.7940 18 1 4.0860 -3.2467 5.8227 19 1 3.8902 -4.8649 4.0273 20 1 1.9864 -4.4032 5.4571 21 6 2.5660 0.4483 3.3080 22 6 3.5262 1.3033 4.0248 23 7 4.2681 1.9614 4.5785 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 2.4521 0.8820 -2.0906 28 1 1.5409 2.4004 -1.8237 29 1 3.4487 3.4397 -1.0052 30 1 5.1710 2.3470 0.1037 31 1 4.8470 0.8468 -0.8190 32 1 1.0651 -1.5221 2.8461 33 1 1.9111 1.0700 2.6975 34 1 1.9687 -0.1105 4.0284 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000690155152.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:15:10 Heat of formation + Delta-G solvation = -55.155715 kcal Electronic energy + Delta-G solvation = -19788.174397 eV Core-core repulsion = 16721.076262 eV Total energy + Delta-G solvation = -3067.098135 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.121 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.46994 -39.39971 -37.93977 -37.31505 -36.51285 -33.73886 -31.12493 -29.53179 -29.30535 -27.15935 -26.39117 -23.43007 -22.76819 -20.58110 -19.93180 -19.00593 -18.11020 -17.75345 -17.17416 -16.59011 -16.22945 -15.85738 -15.64596 -15.17260 -15.08032 -14.91764 -14.58740 -14.13239 -14.08782 -13.71623 -13.39850 -13.11744 -12.93099 -12.78153 -12.50991 -12.36926 -12.25145 -11.91823 -11.87338 -11.74989 -10.92831 -10.78209 -10.43047 -9.87238 -9.68674 -8.70104 -6.14923 1.42782 1.55739 1.59214 1.62406 1.83856 1.92111 2.41956 2.70434 2.81519 3.00987 3.18104 3.21839 3.65553 3.78230 3.85723 4.03386 4.13539 4.24684 4.28981 4.41234 4.51501 4.55100 4.61675 4.79930 4.91363 4.96351 5.03247 5.43455 5.85940 5.97309 6.32176 6.38533 6.43563 6.66613 6.90262 7.31223 7.86501 8.57525 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.022580 B = 0.008593 C = 0.007634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.760090 B = 3257.700519 C = 3667.154415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.399 6.399 3 C 0.067 3.933 4 H 0.108 0.892 5 C 0.028 3.972 6 N -0.656 5.656 7 C 0.059 3.941 8 C -0.149 4.149 9 H 0.105 0.895 10 C 0.498 3.502 11 O -0.601 6.601 12 N -0.460 5.460 13 C -0.423 4.423 14 H 0.048 0.952 15 C -0.012 4.012 16 N -0.879 5.879 17 Si 1.109 2.891 18 H -0.275 1.275 19 H -0.282 1.282 20 H -0.270 1.270 21 C 0.195 3.805 22 C 0.217 3.783 23 N -0.466 5.466 24 H 0.065 0.935 25 H 0.072 0.928 26 H 0.056 0.944 27 H 0.065 0.935 28 H 0.115 0.885 29 H 0.353 0.647 30 H 0.089 0.911 31 H 0.065 0.935 32 H 0.274 0.726 33 H 0.132 0.868 34 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.084 9.989 -4.438 12.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.317 6.317 3 C 0.007 3.993 4 H 0.125 0.875 5 C -0.102 4.102 6 N -0.284 5.284 7 C -0.072 4.072 8 C -0.172 4.172 9 H 0.123 0.877 10 C 0.288 3.712 11 O -0.484 6.484 12 N -0.182 5.182 13 C -0.551 4.551 14 H 0.066 0.934 15 C -0.217 4.217 16 N -0.513 5.513 17 Si 0.931 3.069 18 H -0.200 1.200 19 H -0.208 1.208 20 H -0.194 1.194 21 C 0.067 3.933 22 C -0.102 4.102 23 N -0.145 5.145 24 H 0.083 0.917 25 H 0.091 0.909 26 H 0.074 0.926 27 H 0.084 0.916 28 H 0.133 0.867 29 H 0.170 0.830 30 H 0.107 0.893 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.150 0.850 34 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -4.815 9.092 -3.500 10.867 hybrid contribution -0.103 0.753 -0.438 0.877 sum -4.918 9.844 -3.938 11.688 Atomic orbital electron populations 1.22923 0.79568 1.02984 1.01284 1.88176 1.21396 1.27151 1.94967 1.23676 0.92430 0.86142 0.97066 0.87478 1.23525 0.92344 0.99173 0.95134 1.63197 1.14205 1.05604 1.45371 1.22853 0.95476 0.98496 0.90359 1.22925 0.98716 0.94909 1.00670 0.87667 1.20544 0.80691 0.89379 0.80572 1.90491 1.45056 1.56675 1.56168 1.43410 1.52962 1.10895 1.10889 1.20080 1.02138 0.93165 1.39676 0.93400 1.27399 0.92475 1.01751 1.00107 1.70843 1.14549 1.31737 1.34137 0.82967 0.75862 0.73427 0.74643 1.20046 1.20830 1.19404 1.19260 0.89806 0.89501 0.94686 1.30365 0.94373 0.92562 0.92851 1.81049 1.09908 1.12621 1.10938 0.91679 0.90891 0.92584 0.91627 0.86729 0.82974 0.89270 0.91613 0.91541 0.85029 0.85910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 10.85 113.37 1.23 1.95 16 2 O -0.40 -13.89 8.90 -148.98 -1.33 -15.21 16 3 C 0.07 1.82 3.05 31.49 0.10 1.92 16 4 H 0.11 2.06 7.81 -2.39 -0.02 2.04 16 5 C 0.03 0.68 7.21 86.45 0.62 1.30 16 6 N -0.66 -15.90 7.62 -500.85 -3.82 -19.72 16 7 C 0.06 1.83 6.96 86.45 0.60 2.44 16 8 C -0.15 -4.93 2.51 -10.64 -0.03 -4.95 16 9 H 0.11 3.02 6.14 -2.39 -0.01 3.01 16 10 C 0.50 23.23 5.44 87.65 0.48 23.71 16 11 O -0.60 -34.06 15.53 -3.10 -0.05 -34.11 16 12 N -0.46 -21.76 2.23 -645.41 -1.44 -23.20 16 13 C -0.42 -23.10 8.79 84.04 0.74 -22.37 16 14 H 0.05 2.91 7.84 -2.91 -0.02 2.89 16 15 C -0.01 -0.64 4.79 84.93 0.41 -0.23 16 16 N -0.88 -44.67 12.33 21.66 0.27 -44.40 16 17 Si 1.11 46.62 29.98 68.60 2.06 48.68 16 18 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 19 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 20 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 21 C 0.19 7.28 4.58 84.57 0.39 7.67 16 22 C 0.22 8.16 14.77 89.44 1.32 9.48 16 23 N -0.47 -18.42 18.54 20.00 0.37 -18.05 16 24 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 26 H 0.06 1.22 8.10 -2.39 -0.02 1.20 16 27 H 0.07 1.96 8.08 -2.39 -0.02 1.95 16 28 H 0.11 1.85 8.14 -2.38 -0.02 1.83 16 29 H 0.35 6.24 8.92 -89.70 -0.80 5.44 16 30 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 31 H 0.07 2.61 6.84 -2.39 -0.02 2.59 16 32 H 0.27 13.70 7.30 -92.71 -0.68 13.02 16 33 H 0.13 3.85 6.50 -2.39 -0.02 3.83 16 34 H 0.12 4.93 5.81 -2.39 -0.01 4.92 16 Total: -1.00 -70.66 291.32 2.34 -68.32 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: 0.43 Total: 16.78 kcal Atomic # 6 Polarization: 15.06 SS G_CDS: 5.85 Total: 20.92 kcal Atomic # 7 Polarization: -100.75 SS G_CDS: -4.62 Total: -105.37 kcal Atomic # 8 Polarization: -47.95 SS G_CDS: -1.37 Total: -49.32 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 2.06 Total: 48.68 kcal Total: -70.66 2.34 -68.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690155152.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.164 kcal (2) G-P(sol) polarization free energy of solvation -70.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds