Wall clock time and date at job start Mon Mar 30 2020 21:14:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 120.00439 * 2 1 4 4 H 1.48500 * 109.47190 * 270.00444 * 3 2 1 5 5 H 1.48497 * 109.47146 * 150.00554 * 3 2 1 6 6 H 1.48504 * 109.46847 * 30.00430 * 3 2 1 7 7 C 1.37879 * 119.99495 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99739 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00237 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.47190 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47246 * 179.97438 * 10 9 7 12 12 N 1.46897 * 109.47155 * 179.97438 * 11 10 9 13 13 C 1.48598 * 110.99796 * 52.54409 * 12 11 10 14 14 C 1.55089 * 103.33949 * 159.37046 * 13 12 11 15 15 H 1.09005 * 110.92121 * 81.54043 * 14 13 12 16 16 C 1.50703 * 110.76197 * 204.85334 * 14 13 12 17 17 O 1.20826 * 119.99643 * 27.01382 * 16 14 13 18 18 O 1.34222 * 119.99928 * 207.01784 * 16 14 13 19 19 C 1.53971 * 102.71260 * 323.15966 * 14 13 12 20 20 C 1.52297 * 121.21449 * 165.60697 * 19 14 13 21 21 C 1.52311 * 121.17894 * 237.59935 * 19 14 13 22 22 C 1.48096 * 111.00048 * 170.00217 * 12 11 10 23 23 H 0.96998 * 119.99967 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47152 * 300.00150 * 9 7 2 25 25 H 1.09004 * 109.47177 * 60.00344 * 9 7 2 26 26 H 1.09000 * 109.47220 * 300.00138 * 10 9 7 27 27 H 1.09004 * 109.46755 * 60.00115 * 10 9 7 28 28 H 1.08992 * 109.47297 * 300.00624 * 11 10 9 29 29 H 1.09002 * 109.46565 * 60.00111 * 11 10 9 30 30 H 1.09003 * 110.64204 * 277.83499 * 13 12 11 31 31 H 1.08996 * 110.64541 * 40.90394 * 13 12 11 32 32 H 0.96703 * 117.00045 * 180.02562 * 18 16 14 33 33 H 1.08998 * 117.51676 * 218.02900 * 20 19 14 34 34 H 1.09007 * 117.51248 * 3.15015 * 20 19 14 35 35 H 1.09005 * 117.51543 * 356.79178 * 21 19 14 36 36 H 1.08993 * 117.51821 * 141.86298 * 21 19 14 37 37 H 1.09008 * 109.99865 * 333.59034 * 22 12 11 38 38 H 1.09001 * 110.00452 * 94.89327 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 3.5469 1.4400 0.6999 6 1 1.4468 2.6526 0.7002 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2451 -3.6622 -0.0018 11 6 1.4801 -4.9872 -0.0012 12 7 2.4346 -6.1037 -0.0030 13 6 3.4236 -5.9607 1.0968 14 6 3.9636 -7.4026 1.2822 15 1 4.7332 -7.6280 0.5439 16 6 4.4927 -7.5993 2.6795 17 8 4.0515 -6.9401 3.5909 18 8 5.4542 -8.5068 2.9115 19 6 2.7111 -8.2665 1.0462 20 6 2.8205 -9.7667 0.8076 21 6 2.2106 -9.2365 2.1084 22 6 1.7449 -7.3920 0.2375 23 1 -0.4850 -0.8400 -0.0004 24 1 0.6246 -2.5570 0.8897 25 1 0.6240 -2.5567 -0.8903 26 1 2.8711 -3.6040 -0.8922 27 1 2.8725 -3.6048 0.8878 28 1 0.8544 -5.0450 0.8894 29 1 0.8525 -5.0447 -0.8905 30 1 4.2269 -5.2838 0.8056 31 1 2.9373 -5.6122 2.0079 32 1 5.7614 -8.5974 3.8240 33 1 2.1432 -10.2113 0.0785 34 1 3.8129 -10.2142 0.8624 35 1 2.8019 -9.3354 3.0189 36 1 1.1323 -9.3319 2.2354 37 1 0.8295 -7.2245 0.8052 38 1 1.5115 -7.8731 -0.7123 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000714580607.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:14:55 Heat of formation + Delta-G solvation = -76.225630 kcal Electronic energy + Delta-G solvation = -18790.084635 eV Core-core repulsion = 15825.613183 eV Total energy + Delta-G solvation = -2964.471452 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 253.146 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.05004 -39.07610 -36.43216 -36.25553 -33.94628 -31.84437 -30.39354 -27.33708 -25.62742 -24.01364 -22.83834 -22.12858 -21.18361 -20.20749 -19.13132 -18.26903 -16.96369 -16.64259 -16.32580 -15.44697 -15.12612 -14.76518 -14.09689 -13.91778 -13.67561 -13.40985 -13.20888 -12.64299 -12.36030 -12.07631 -11.86910 -11.77703 -11.55084 -11.34096 -11.18604 -10.81747 -10.73999 -10.67940 -10.50234 -10.09821 -10.03454 -9.79328 -9.70630 -8.50404 -8.32373 -8.27899 -6.32115 -4.00543 1.95861 2.70296 3.46403 3.46722 3.50424 3.66111 4.01346 4.07839 4.39629 4.51274 4.58410 4.60391 5.01042 5.16440 5.30366 5.32982 5.36146 5.45258 5.51146 5.59338 5.61040 5.71728 5.79956 5.83804 5.89881 5.90212 6.17210 6.25447 6.52671 6.62317 6.83794 7.04828 7.18953 7.44861 7.58296 7.67424 8.27036 8.51447 8.93336 9.71691 11.08744 Molecular weight = 253.15amu Principal moments of inertia in cm(-1) A = 0.032668 B = 0.004224 C = 0.003906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.910719 B = 6627.886912 C = 7167.017270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.013 3.987 3 Si 1.071 2.929 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.285 1.285 7 C -0.599 4.599 8 H 0.049 0.951 9 C 0.009 3.991 10 C -0.103 4.103 11 C 0.046 3.954 12 N -0.512 5.512 13 C 0.052 3.948 14 C -0.054 4.054 15 H 0.118 0.882 16 C 0.488 3.512 17 O -0.505 6.505 18 O -0.517 6.517 19 C -0.127 4.127 20 C -0.155 4.155 21 C -0.169 4.169 22 C 0.072 3.928 23 H 0.268 0.732 24 H 0.005 0.995 25 H 0.008 0.992 26 H 0.059 0.941 27 H 0.050 0.950 28 H 0.033 0.967 29 H 0.075 0.925 30 H 0.094 0.906 31 H 0.067 0.933 32 H 0.408 0.592 33 H 0.102 0.898 34 H 0.101 0.899 35 H 0.090 0.910 36 H 0.102 0.898 37 H 0.052 0.948 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.666 -21.093 3.103 22.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.190 4.190 3 Si 0.900 3.100 4 H -0.214 1.214 5 H -0.215 1.215 6 H -0.210 1.210 7 C -0.638 4.638 8 H 0.067 0.933 9 C -0.029 4.029 10 C -0.141 4.141 11 C -0.081 4.081 12 N -0.235 5.235 13 C -0.076 4.076 14 C -0.074 4.074 15 H 0.136 0.864 16 C 0.329 3.671 17 O -0.392 6.392 18 O -0.329 6.329 19 C -0.128 4.128 20 C -0.192 4.192 21 C -0.206 4.206 22 C -0.056 4.056 23 H 0.079 0.921 24 H 0.023 0.977 25 H 0.026 0.974 26 H 0.077 0.923 27 H 0.069 0.931 28 H 0.051 0.949 29 H 0.094 0.906 30 H 0.112 0.888 31 H 0.085 0.915 32 H 0.267 0.733 33 H 0.121 0.879 34 H 0.119 0.881 35 H 0.109 0.891 36 H 0.120 0.880 37 H 0.070 0.930 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 7.449 -19.191 2.433 20.729 hybrid contribution -0.002 -1.756 1.461 2.285 sum 7.447 -20.947 3.895 22.570 Atomic orbital electron populations 1.70752 1.06898 1.30568 1.46972 1.25857 0.96568 1.02744 0.93835 0.83512 0.74667 0.75099 0.76725 1.21450 1.21508 1.21031 1.22075 0.94312 0.92003 1.55394 0.93307 1.19201 0.94646 0.93173 0.95868 1.21592 0.99064 0.92327 1.01121 1.22528 0.94063 0.90899 1.00618 1.64961 1.14778 1.01902 1.41898 1.23195 0.96903 0.92600 0.94863 1.21471 0.97213 0.98005 0.90715 0.86410 1.23272 0.75937 0.75854 0.92043 1.90749 1.57016 1.45261 1.46200 1.84559 1.53038 1.57496 1.37803 1.21586 0.96370 0.91424 1.03400 1.22990 1.02929 0.93976 0.99266 1.23040 1.01703 1.02718 0.93157 1.22327 0.94575 0.89956 0.98700 0.92134 0.97680 0.97423 0.92259 0.93118 0.94858 0.90642 0.88797 0.91450 0.73327 0.87929 0.88064 0.89136 0.87998 0.92977 0.89573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.69 13.65 55.43 0.76 -27.94 16 2 C 0.01 0.39 5.46 -17.82 -0.10 0.30 16 3 Si 1.07 25.95 29.90 -169.99 -5.08 20.87 16 4 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.60 -17.58 9.11 -34.44 -0.31 -17.89 16 8 H 0.05 1.41 7.74 -52.48 -0.41 1.00 16 9 C 0.01 0.23 4.28 -27.88 -0.12 0.11 16 10 C -0.10 -2.20 4.81 -26.73 -0.13 -2.33 16 11 C 0.05 0.82 5.03 -3.82 -0.02 0.80 16 12 N -0.51 -7.74 5.40 -230.53 -1.25 -8.99 16 13 C 0.05 0.77 4.43 -1.78 -0.01 0.76 16 14 C -0.05 -0.64 3.44 -90.16 -0.31 -0.95 16 15 H 0.12 1.24 8.14 -51.93 -0.42 0.81 16 16 C 0.49 5.83 5.82 36.01 0.21 6.04 16 17 O -0.51 -7.76 16.62 -18.75 -0.31 -8.07 16 18 O -0.52 -4.50 13.42 -39.24 -0.53 -5.03 16 19 C -0.13 -1.39 2.39 -154.52 -0.37 -1.76 16 20 C -0.15 -1.30 10.29 -27.02 -0.28 -1.58 16 21 C -0.17 -1.64 9.68 -27.01 -0.26 -1.90 16 22 C 0.07 0.90 6.47 -2.97 -0.02 0.88 16 23 H 0.27 8.37 7.22 -40.82 -0.29 8.07 16 24 H 0.00 0.14 8.01 -51.93 -0.42 -0.28 16 25 H 0.01 0.20 8.01 -51.93 -0.42 -0.21 16 26 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 27 H 0.05 1.08 6.79 -51.93 -0.35 0.73 16 28 H 0.03 0.60 7.82 -51.93 -0.41 0.19 16 29 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 30 H 0.09 1.39 7.68 -51.93 -0.40 0.99 16 31 H 0.07 1.13 7.08 -51.93 -0.37 0.77 16 32 H 0.41 1.87 9.10 45.56 0.41 2.28 16 33 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.10 0.78 8.14 -51.92 -0.42 0.36 16 35 H 0.09 0.91 6.95 -51.93 -0.36 0.55 16 36 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.05 0.66 7.58 -51.92 -0.39 0.27 16 38 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 312.54 15.07 4.71 4.71 Total: -1.00 -33.76 312.54 -8.57 -42.33 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: -5.15 Total: -0.36 kcal Atomic # 6 Polarization: -15.81 SS G_CDS: -1.71 Total: -17.52 kcal Atomic # 7 Polarization: -36.44 SS G_CDS: -0.49 Total: -36.93 kcal Atomic # 8 Polarization: -12.26 SS G_CDS: -0.84 Total: -13.10 kcal Atomic # 14 Polarization: 25.95 SS G_CDS: -5.08 Total: 20.87 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -33.76 -8.57 -42.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714580607.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.896 kcal (2) G-P(sol) polarization free energy of solvation -33.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds