Wall clock time and date at job start Mon Mar 30 2020 21:19:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46499 * 109.46912 * 2 1 4 4 C 1.34927 * 125.25596 * 271.71079 * 3 2 1 5 5 O 1.21283 * 125.74920 * 359.73697 * 4 3 2 6 6 C 1.51334 * 108.49637 * 179.63722 * 4 3 2 7 7 N 1.48294 * 104.83930 * 343.65659 * 6 4 3 8 8 C 1.46541 * 125.25408 * 92.02037 * 3 2 1 9 9 C 1.52761 * 110.24331 * 78.34378 * 8 3 2 10 10 C 1.53239 * 109.37458 * 298.47197 * 9 8 3 11 11 N 1.46932 * 108.74919 * 305.86556 * 10 9 8 12 12 C 1.36933 * 120.61078 * 233.96093 * 11 10 9 13 13 H 1.08000 * 120.00371 * 152.84738 * 12 11 10 14 14 C 1.38817 * 120.00277 * 332.83961 * 12 11 10 15 15 N 1.31616 * 119.99746 * 331.90972 * 14 12 11 16 16 Si 1.86801 * 120.00195 * 151.90596 * 14 12 11 17 17 H 1.48500 * 109.47211 * 94.98937 * 16 14 12 18 18 H 1.48498 * 109.47178 * 214.99720 * 16 14 12 19 19 H 1.48502 * 109.46836 * 334.99135 * 16 14 12 20 20 C 1.46920 * 118.77219 * 53.97873 * 11 10 9 21 21 C 1.52754 * 110.25188 * 316.27405 * 8 3 2 22 22 H 1.09003 * 109.47115 * 187.07045 * 1 2 3 23 23 H 1.09006 * 109.46738 * 67.07761 * 1 2 3 24 24 H 1.08998 * 109.47489 * 307.07727 * 1 2 3 25 25 H 1.08999 * 109.47277 * 119.99955 * 2 1 3 26 26 H 1.09002 * 109.47366 * 240.00184 * 2 1 3 27 27 H 1.09002 * 110.51949 * 224.72555 * 6 4 3 28 28 H 1.08997 * 110.27412 * 102.46445 * 6 4 3 29 29 H 1.00895 * 111.00073 * 144.79680 * 7 6 4 30 30 H 1.09002 * 109.48689 * 58.43626 * 9 8 3 31 31 H 1.08998 * 109.49077 * 178.49849 * 9 8 3 32 32 H 1.08996 * 109.58860 * 186.08005 * 10 9 8 33 33 H 1.08997 * 109.71136 * 65.71177 * 10 9 8 34 34 H 0.97005 * 119.99747 * 179.97438 * 15 14 12 35 35 H 1.08997 * 109.58757 * 186.24079 * 20 11 10 36 36 H 1.09003 * 109.70533 * 65.88437 * 20 11 10 37 37 H 1.08998 * 109.48731 * 181.50791 * 21 8 3 38 38 H 1.08997 * 109.48612 * 301.54641 * 21 8 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2468 2.1265 -1.1013 5 8 2.0872 1.7642 -2.2477 6 6 2.7335 3.4914 -0.6649 7 7 2.3771 3.5802 0.7719 8 6 2.3400 2.1646 1.1959 9 6 3.7053 1.7547 1.7448 10 6 3.6689 0.2763 2.1463 11 7 2.5481 0.0661 3.0730 12 6 2.7530 -0.5204 4.2933 13 1 2.0933 -0.2952 5.1182 14 6 3.8085 -1.4045 4.4701 15 7 4.2587 -2.1042 3.4503 16 14 4.5900 -1.6010 6.1554 17 1 3.9707 -2.7543 6.8567 18 1 6.0473 -1.8403 6.0003 19 1 4.3730 -0.3646 6.9488 20 6 1.2037 0.4965 2.6659 21 6 1.2607 1.9729 2.2597 22 1 -0.3633 -1.0199 0.1265 23 1 -0.3633 0.4003 -0.9466 24 1 -0.3634 0.6195 0.8199 25 1 1.8933 -0.5138 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 2.2296 4.2754 -1.2301 28 1 3.8133 3.5662 -0.7933 29 1 3.0764 4.0937 1.2868 30 1 4.4654 1.9046 0.9780 31 1 3.9440 2.3628 2.6174 32 1 4.6043 0.0078 2.6371 33 1 3.5307 -0.3421 1.2595 34 1 4.9965 -2.7217 3.5738 35 1 0.5124 0.3731 3.4995 36 1 0.8665 -0.1025 1.8199 37 1 1.4982 2.5812 3.1325 38 1 0.2947 2.2769 1.8566 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309613402.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:19:26 Heat of formation + Delta-G solvation = 36.113286 kcal Electronic energy + Delta-G solvation = -20598.349830 eV Core-core repulsion = 17671.042510 eV Total energy + Delta-G solvation = -2927.307320 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 253.153 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -41.02983 -37.73855 -35.77999 -34.31966 -32.27409 -30.64185 -29.77820 -29.57026 -26.31539 -24.46701 -22.95782 -22.48108 -21.32237 -20.29213 -18.94022 -17.10004 -16.38882 -15.97250 -15.15740 -14.59011 -14.52891 -14.28804 -14.04757 -13.75053 -13.56819 -13.16940 -13.14330 -12.66888 -12.44846 -12.08107 -11.75930 -11.54093 -11.38578 -11.23803 -10.79095 -10.70962 -10.63593 -10.32038 -10.24670 -9.83527 -9.75080 -9.36817 -9.04392 -8.50461 -8.14777 -6.82166 -5.93655 -3.26930 2.73638 3.17731 3.31465 3.41025 3.44056 4.13611 4.42769 4.44484 5.09109 5.17127 5.21787 5.24271 5.33214 5.37415 5.53765 5.59603 5.73812 5.88934 5.91227 6.05625 6.09781 6.13498 6.20324 6.27765 6.42507 6.44324 6.49968 6.68992 6.80514 6.84920 7.04157 7.22964 7.36864 7.47665 7.75003 8.30180 8.36789 9.06490 9.72982 10.29582 11.14925 Molecular weight = 253.15amu Principal moments of inertia in cm(-1) A = 0.032078 B = 0.007258 C = 0.006940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.659763 B = 3857.126007 C = 4033.550934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.102 3.898 3 N -0.596 5.596 4 C 0.512 3.488 5 O -0.538 6.538 6 C 0.004 3.996 7 N -0.655 5.655 8 C 0.320 3.680 9 C -0.173 4.173 10 C 0.171 3.829 11 N -0.588 5.588 12 C -0.263 4.263 13 H 0.067 0.933 14 C 0.010 3.990 15 N -0.888 5.888 16 Si 0.890 3.110 17 H -0.287 1.287 18 H -0.290 1.290 19 H -0.278 1.278 20 C 0.107 3.893 21 C -0.119 4.119 22 H 0.067 0.933 23 H 0.050 0.950 24 H 0.068 0.932 25 H 0.127 0.873 26 H 0.072 0.928 27 H 0.110 0.890 28 H 0.078 0.922 29 H 0.353 0.647 30 H 0.051 0.949 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.029 0.971 34 H 0.254 0.746 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.072 0.928 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.052 8.715 -4.238 10.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.018 4.018 3 N -0.329 5.329 4 C 0.299 3.701 5 O -0.415 6.415 6 C -0.128 4.128 7 N -0.286 5.286 8 C 0.145 3.855 9 C -0.215 4.215 10 C 0.045 3.955 11 N -0.311 5.311 12 C -0.392 4.392 13 H 0.084 0.916 14 C -0.190 4.190 15 N -0.531 5.531 16 Si 0.719 3.281 17 H -0.214 1.214 18 H -0.216 1.216 19 H -0.204 1.204 20 C -0.019 4.019 21 C -0.159 4.159 22 H 0.086 0.914 23 H 0.069 0.931 24 H 0.087 0.913 25 H 0.145 0.855 26 H 0.090 0.910 27 H 0.128 0.872 28 H 0.096 0.904 29 H 0.170 0.830 30 H 0.070 0.930 31 H 0.092 0.908 32 H 0.097 0.903 33 H 0.047 0.953 34 H 0.064 0.936 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.091 0.909 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.792 8.433 -4.904 10.467 hybrid contribution 1.596 -0.297 0.921 1.866 sum -2.196 8.136 -3.983 9.321 Atomic orbital electron populations 1.22324 0.96022 1.02457 1.02070 1.22104 0.94185 0.80451 1.05097 1.48502 1.64106 1.13916 1.06402 1.20985 0.76884 0.87323 0.84925 1.90694 1.54091 1.77113 1.19560 1.22841 1.01097 0.97080 0.91822 1.63977 1.50878 1.11386 1.02314 1.21326 0.95994 0.82886 0.85268 1.23060 0.94708 1.03579 1.00171 1.20721 0.93356 0.88402 0.93052 1.44076 1.00724 1.69190 1.17158 1.19072 1.13565 1.19929 0.86639 0.91568 1.24913 1.01664 0.95510 0.96901 1.70172 1.27777 1.24249 1.30886 0.86494 0.78914 0.77958 0.84755 1.21419 1.21566 1.20354 1.21822 0.89080 0.91615 0.99340 1.22089 0.96707 1.00368 0.96746 0.91416 0.93066 0.91271 0.85516 0.91003 0.87216 0.90369 0.82960 0.93031 0.90777 0.90321 0.95318 0.93581 0.92491 0.92609 0.90930 0.91779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.54 8.94 37.16 0.33 -2.21 16 2 C 0.10 1.76 4.85 -4.04 -0.02 1.74 16 3 N -0.60 -10.02 2.36 -161.54 -0.38 -10.41 16 4 C 0.51 8.76 8.20 -10.61 -0.09 8.67 16 5 O -0.54 -10.78 17.77 5.55 0.10 -10.69 16 6 C 0.00 0.05 7.43 -3.89 -0.03 0.02 16 7 N -0.65 -8.65 7.28 -102.62 -0.75 -9.40 16 8 C 0.32 5.06 0.97 -190.29 -0.18 4.88 16 9 C -0.17 -2.98 5.00 -26.73 -0.13 -3.11 16 10 C 0.17 3.71 4.75 -3.68 -0.02 3.69 16 11 N -0.59 -13.35 2.81 -172.27 -0.48 -13.83 16 12 C -0.26 -6.76 9.50 -15.06 -0.14 -6.91 16 13 H 0.07 1.70 7.97 -52.49 -0.42 1.28 16 14 C 0.01 0.27 4.59 -17.43 -0.08 0.19 16 15 N -0.89 -24.52 11.90 55.49 0.66 -23.86 16 16 Si 0.89 20.67 29.64 -169.99 -5.04 15.63 16 17 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 20 C 0.11 2.04 5.25 -3.69 -0.02 2.02 16 21 C -0.12 -1.94 4.88 -26.74 -0.13 -2.07 16 22 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 23 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 24 H 0.07 1.02 5.36 -51.93 -0.28 0.74 16 25 H 0.13 2.47 3.20 -51.93 -0.17 2.30 16 26 H 0.07 1.26 8.05 -51.93 -0.42 0.84 16 27 H 0.11 1.28 8.14 -51.93 -0.42 0.86 16 28 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.35 3.95 8.42 -39.29 -0.33 3.62 16 30 H 0.05 0.83 8.09 -51.93 -0.42 0.41 16 31 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 32 H 0.08 1.94 6.34 -51.93 -0.33 1.61 16 33 H 0.03 0.66 5.73 -51.93 -0.30 0.36 16 34 H 0.25 6.84 8.31 -40.82 -0.34 6.50 16 35 H 0.06 1.09 7.93 -51.93 -0.41 0.68 16 36 H 0.06 1.03 2.43 -51.93 -0.13 0.91 16 37 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.06 0.99 7.30 -51.93 -0.38 0.61 16 LS Contribution 285.43 15.07 4.30 4.30 Total: -1.00 -29.09 285.43 -7.35 -36.44 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -5.25 Total: 4.89 kcal Atomic # 6 Polarization: 7.43 SS G_CDS: -0.51 Total: 6.92 kcal Atomic # 7 Polarization: -56.54 SS G_CDS: -0.95 Total: -57.50 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: 0.10 Total: -10.69 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.04 Total: 15.63 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -29.09 -7.35 -36.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309613402.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.552 kcal (2) G-P(sol) polarization free energy of solvation -29.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds