Wall clock time and date at job start Mon Mar 30 2020 21:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86809 * 119.99733 * 2 1 4 4 H 1.48495 * 109.46612 * 269.99872 * 3 2 1 5 5 H 1.48495 * 109.46950 * 29.99809 * 3 2 1 6 6 H 1.48498 * 109.46884 * 150.00451 * 3 2 1 7 7 C 1.37871 * 120.00368 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00436 * 179.97438 * 7 2 1 9 9 C 1.50708 * 120.00009 * 359.72323 * 7 2 1 10 10 C 1.53118 * 109.52190 * 299.68544 * 9 7 2 11 11 C 1.53033 * 109.28025 * 182.43965 * 10 9 7 12 12 N 1.46847 * 109.52394 * 59.17524 * 11 10 9 13 13 C 1.46899 * 111.00166 * 174.16184 * 12 11 10 14 14 H 1.09001 * 109.47201 * 304.73533 * 13 12 11 15 15 C 1.53004 * 109.47030 * 64.72881 * 13 12 11 16 16 C 1.52997 * 109.47223 * 179.97438 * 15 13 12 17 17 C 1.53001 * 109.47206 * 300.00304 * 16 15 13 18 18 C 1.52997 * 109.47279 * 60.00027 * 17 16 15 19 19 C 1.53001 * 109.47196 * 184.73061 * 13 12 11 20 20 H 1.08996 * 109.46871 * 299.99913 * 19 13 12 21 21 O 1.42898 * 109.47050 * 60.00355 * 19 13 12 22 22 C 1.46848 * 111.19912 * 298.26022 * 12 11 10 23 23 C 1.53037 * 109.52101 * 61.74229 * 22 12 11 24 24 H 0.97001 * 119.99790 * 359.97438 * 1 2 3 25 25 H 1.08994 * 109.51985 * 59.87200 * 9 7 2 26 26 H 1.09008 * 109.50077 * 302.37868 * 10 9 7 27 27 H 1.09000 * 109.50625 * 62.49468 * 10 9 7 28 28 H 1.08999 * 109.45973 * 299.16204 * 11 10 9 29 29 H 1.08993 * 109.45608 * 179.18844 * 11 10 9 30 30 H 1.08993 * 109.47423 * 300.00716 * 15 13 12 31 31 H 1.09010 * 109.46818 * 60.00281 * 15 13 12 32 32 H 1.09000 * 109.47329 * 60.00235 * 16 15 13 33 33 H 1.09004 * 109.47117 * 180.02562 * 16 15 13 34 34 H 1.09003 * 109.46951 * 179.97438 * 17 16 15 35 35 H 1.08996 * 109.46871 * 299.99671 * 17 16 15 36 36 H 1.08997 * 109.47280 * 59.99488 * 18 17 16 37 37 H 1.08996 * 109.47343 * 180.02562 * 18 17 16 38 38 H 0.96703 * 113.99962 * 180.02562 * 21 19 13 39 39 H 1.08998 * 109.46452 * 301.72587 * 22 12 11 40 40 H 1.08996 * 109.46259 * 181.75504 * 22 12 11 41 41 H 1.09007 * 109.50308 * 180.88090 * 23 22 12 42 42 H 1.08999 * 109.54046 * 60.78104 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6179 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1940 0.0005 8 1 3.0847 -1.1940 0.0001 9 6 1.2512 -2.4992 0.0074 10 6 0.3816 -2.5814 1.2651 11 6 -0.3338 -3.9338 1.2972 12 7 0.6599 -5.0149 1.2958 13 6 0.0145 -6.3235 1.4656 14 1 -0.5907 -6.3153 2.3721 15 6 -0.8799 -6.6115 0.2581 16 6 -1.5517 -7.9747 0.4345 17 6 -0.4799 -9.0609 0.5460 18 6 0.4144 -8.7730 1.7535 19 6 1.0859 -7.4100 1.5774 20 1 1.6909 -7.4182 0.6708 21 8 1.9211 -7.1410 2.7052 22 6 1.4756 -4.9849 0.0751 23 6 2.2451 -3.6638 0.0066 24 1 -0.4850 0.8401 0.0004 25 1 0.6188 -2.5593 -0.8783 26 1 1.0108 -2.4815 2.1496 27 1 -0.3564 -1.7794 1.2503 28 1 -0.9733 -4.0272 0.4194 29 1 -0.9426 -4.0011 2.1988 30 1 -1.6431 -5.8375 0.1783 31 1 -0.2747 -6.6198 -0.6486 32 1 -2.1568 -7.9670 1.3412 33 1 -2.1886 -8.1801 -0.4260 34 1 -0.9586 -10.0321 0.6722 35 1 0.1250 -9.0687 -0.3606 36 1 -0.1906 -8.7651 2.6601 37 1 1.1782 -9.5465 1.8327 38 1 2.6249 -7.7910 2.8374 39 1 0.8277 -5.0734 -0.7969 40 1 2.1810 -5.8157 0.0891 41 1 2.8385 -3.6352 -0.9074 42 1 2.9040 -3.5805 0.8709 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336495607.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:16:33 Heat of formation + Delta-G solvation = -69.252302 kcal Electronic energy + Delta-G solvation = -20090.276682 eV Core-core repulsion = 17261.940711 eV Total energy + Delta-G solvation = -2828.335971 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.79502 -37.15083 -35.38670 -33.66187 -31.41287 -29.86534 -29.69113 -28.12912 -25.28513 -22.97050 -22.63322 -21.72310 -20.93566 -19.53549 -18.15207 -17.08216 -16.39925 -15.84328 -14.75322 -14.64576 -14.48389 -13.98954 -13.81226 -13.33443 -13.29092 -12.78406 -12.74197 -12.35070 -12.23756 -11.90471 -11.48747 -11.36559 -11.10843 -10.95152 -10.80597 -10.75145 -10.64436 -10.43493 -10.18989 -10.01929 -9.77532 -9.65353 -9.33808 -8.82701 -8.63031 -8.22492 -7.50894 -5.91157 -3.95964 3.35315 3.41875 3.46020 4.23761 4.38116 4.50715 4.67679 4.90448 4.96213 5.15116 5.21688 5.30939 5.39066 5.40792 5.49106 5.60805 5.76943 5.86251 5.90245 5.98448 6.04293 6.06383 6.09260 6.12284 6.25439 6.31870 6.40515 6.48882 6.70970 6.72423 6.95802 7.18111 7.27760 7.53889 7.72394 7.79435 7.88625 7.94079 8.14012 8.23942 8.55972 9.07704 9.68028 11.15120 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.042897 B = 0.005091 C = 0.004853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.575067 B = 5498.701234 C = 5768.093058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.060 3.940 3 Si 0.889 3.111 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.508 4.508 8 H 0.054 0.946 9 C 0.049 3.951 10 C -0.103 4.103 11 C 0.056 3.944 12 N -0.517 5.517 13 C 0.094 3.906 14 H 0.080 0.920 15 C -0.154 4.154 16 C -0.117 4.117 17 C -0.117 4.117 18 C -0.151 4.151 19 C 0.114 3.886 20 H 0.053 0.947 21 O -0.546 6.546 22 C 0.057 3.943 23 C -0.106 4.106 24 H 0.258 0.742 25 H 0.019 0.981 26 H 0.043 0.957 27 H 0.091 0.909 28 H 0.023 0.977 29 H 0.053 0.947 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.069 0.931 37 H 0.062 0.938 38 H 0.366 0.634 39 H 0.023 0.977 40 H 0.056 0.944 41 H 0.046 0.954 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.478 -17.410 1.588 17.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.140 4.140 3 Si 0.717 3.283 4 H -0.209 1.209 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.547 4.547 8 H 0.072 0.928 9 C 0.030 3.970 10 C -0.142 4.142 11 C -0.071 4.071 12 N -0.240 5.240 13 C -0.016 4.016 14 H 0.099 0.901 15 C -0.194 4.194 16 C -0.155 4.155 17 C -0.154 4.154 18 C -0.190 4.190 19 C 0.054 3.946 20 H 0.071 0.929 21 O -0.350 6.350 22 C -0.070 4.070 23 C -0.143 4.143 24 H 0.068 0.932 25 H 0.037 0.963 26 H 0.062 0.938 27 H 0.109 0.891 28 H 0.041 0.959 29 H 0.071 0.929 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.081 0.919 38 H 0.211 0.789 39 H 0.041 0.959 40 H 0.074 0.926 41 H 0.065 0.935 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.712 -16.654 2.053 16.868 hybrid contribution 0.200 0.248 -0.796 0.857 sum -1.512 -16.406 1.257 16.524 Atomic orbital electron populations 1.69886 1.05856 1.26194 1.51311 1.24963 0.94823 0.98945 0.95286 0.86644 0.79962 0.83738 0.77944 1.20862 1.21324 1.19958 1.21229 0.92874 0.90733 1.49827 0.92812 1.18672 0.92720 0.91726 0.93878 1.21647 1.00138 0.92992 0.99384 1.22281 0.93200 0.93113 0.98478 1.62148 1.23188 1.01135 1.37529 1.21644 0.92999 0.89407 0.97501 0.90147 1.22251 0.99917 0.97375 0.99807 1.21508 0.97619 0.94585 1.01760 1.21487 0.97336 0.98521 0.98090 1.22290 0.99767 0.97608 0.99299 1.21827 0.91270 0.92642 0.88835 0.92882 1.86714 1.46064 1.53403 1.48773 1.22167 0.95833 0.99137 0.89890 1.21665 0.98736 0.93855 1.00085 0.93183 0.96283 0.93829 0.89104 0.95866 0.92869 0.90960 0.91491 0.91924 0.92031 0.91951 0.91984 0.91192 0.91907 0.78920 0.95855 0.92578 0.93490 0.92487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.91 11.38 55.43 0.63 -25.28 16 2 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 3 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.27 -6.65 7.11 56.52 0.40 -6.24 16 7 C -0.51 -14.33 8.56 -34.44 -0.29 -14.62 16 8 H 0.05 1.50 7.75 -52.48 -0.41 1.10 16 9 C 0.05 1.24 2.16 -91.65 -0.20 1.05 16 10 C -0.10 -2.54 5.12 -26.65 -0.14 -2.67 16 11 C 0.06 1.16 5.02 -3.84 -0.02 1.14 16 12 N -0.52 -9.71 4.51 -226.70 -1.02 -10.73 16 13 C 0.09 1.43 1.93 -67.71 -0.13 1.30 16 14 H 0.08 1.27 8.08 -51.93 -0.42 0.85 16 15 C -0.15 -2.07 4.51 -26.73 -0.12 -2.19 16 16 C -0.12 -1.23 5.92 -26.73 -0.16 -1.39 16 17 C -0.12 -1.10 5.92 -26.73 -0.16 -1.26 16 18 C -0.15 -1.52 5.54 -26.76 -0.15 -1.67 16 19 C 0.11 1.48 2.59 -26.75 -0.07 1.41 16 20 H 0.05 0.70 6.29 -51.93 -0.33 0.38 16 21 O -0.55 -7.74 13.18 -35.23 -0.46 -8.20 16 22 C 0.06 1.08 4.64 -3.83 -0.02 1.06 16 23 C -0.11 -2.32 5.32 -26.65 -0.14 -2.46 16 24 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 25 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.04 1.11 8.14 -51.92 -0.42 0.69 16 27 H 0.09 2.45 6.18 -51.93 -0.32 2.13 16 28 H 0.02 0.48 6.72 -51.93 -0.35 0.13 16 29 H 0.05 1.03 8.08 -51.93 -0.42 0.61 16 30 H 0.07 1.05 6.64 -51.93 -0.35 0.70 16 31 H 0.07 0.93 6.53 -51.92 -0.34 0.59 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.37 3.43 9.08 45.56 0.41 3.85 16 39 H 0.02 0.44 6.62 -51.93 -0.34 0.09 16 40 H 0.06 0.96 6.02 -51.93 -0.31 0.64 16 41 H 0.05 0.99 8.14 -51.92 -0.42 0.57 16 42 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 310.21 15.07 4.67 4.67 Total: -1.00 -30.18 310.21 -9.42 -39.60 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -6.53 Total: 1.95 kcal Atomic # 6 Polarization: -17.01 SS G_CDS: -1.69 Total: -18.70 kcal Atomic # 7 Polarization: -35.62 SS G_CDS: -0.39 Total: -36.01 kcal Atomic # 8 Polarization: -7.74 SS G_CDS: -0.46 Total: -8.20 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.18 -9.42 -39.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336495607.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.648 kcal (2) G-P(sol) polarization free energy of solvation -30.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds