Wall clock time and date at job start Mon Mar 30 2020 21:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.46929 * 2 1 4 4 C 1.53005 * 109.47242 * 176.77382 * 3 2 1 5 5 C 1.50694 * 109.52245 * 62.63381 * 4 3 2 6 6 O 1.21281 * 119.99783 * 247.02358 * 5 4 3 7 7 N 1.34773 * 120.00026 * 67.02012 * 5 4 3 8 8 C 1.46500 * 119.99819 * 175.43262 * 7 5 4 9 9 C 1.50703 * 109.47191 * 180.02562 * 8 7 5 10 10 H 1.08009 * 119.99675 * 359.97438 * 9 8 7 11 11 C 1.37876 * 120.00405 * 179.97438 * 9 8 7 12 12 N 1.31516 * 119.99705 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 120.00254 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.46713 * 60.00216 * 13 11 9 15 15 H 1.48491 * 109.47057 * 180.02562 * 13 11 9 16 16 H 1.48496 * 109.46911 * 300.00395 * 13 11 9 17 17 C 1.53120 * 109.57582 * 182.79624 * 4 3 2 18 18 C 1.53035 * 109.27533 * 177.59073 * 17 4 3 19 19 N 1.46844 * 109.52415 * 300.81543 * 18 17 4 20 20 C 1.46850 * 111.19719 * 61.74712 * 19 18 17 21 21 C 1.53033 * 109.52099 * 298.25496 * 20 19 18 22 22 H 1.08992 * 109.47039 * 59.99472 * 1 2 3 23 23 H 1.09001 * 109.46519 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.46639 * 299.99578 * 1 2 3 25 25 H 1.09003 * 109.47113 * 240.00644 * 2 1 3 26 26 H 1.08994 * 109.47458 * 120.00201 * 2 1 3 27 27 H 1.09006 * 109.47371 * 56.77606 * 3 2 1 28 28 H 1.08998 * 109.47787 * 296.77671 * 3 2 1 29 29 H 0.96999 * 120.00517 * 355.71048 * 7 5 4 30 30 H 1.08994 * 109.47391 * 299.99951 * 8 7 5 31 31 H 1.09005 * 109.47239 * 60.00462 * 8 7 5 32 32 H 0.97001 * 119.99648 * 179.97438 * 12 11 9 33 33 H 1.08999 * 109.50063 * 297.52658 * 17 4 3 34 34 H 1.08990 * 109.50502 * 57.64856 * 17 4 3 35 35 H 1.09003 * 109.46259 * 180.80233 * 18 17 4 36 36 H 1.09006 * 109.45699 * 60.82846 * 18 17 4 37 37 H 1.00899 * 111.00061 * 185.83777 * 19 18 17 38 38 H 1.09000 * 109.46101 * 178.24089 * 20 19 18 39 39 H 1.08997 * 109.45402 * 58.26870 * 20 19 18 40 40 H 1.09000 * 109.50837 * 299.24307 * 21 20 19 41 41 H 1.09001 * 109.50770 * 179.12115 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5679 1.4433 0.0812 5 6 4.1374 0.7672 -1.1392 6 8 4.7221 -0.2897 -1.0295 7 7 3.9970 1.3369 -2.3525 8 6 4.6357 0.7321 -3.5240 9 6 4.3267 1.5573 -4.7466 10 1 3.7152 2.4434 -4.6597 11 6 4.8245 1.1811 -5.9762 12 7 5.5686 0.1019 -6.0821 13 14 4.4408 2.2036 -7.4918 14 1 4.9577 3.5828 -7.3022 15 1 5.0884 1.5906 -8.6792 16 1 2.9711 2.2497 -7.6986 17 6 4.0771 2.8857 0.1516 18 6 5.6009 2.8771 0.2932 19 7 5.9766 2.1465 1.5103 20 6 5.5395 0.7460 1.4452 21 6 4.0139 0.6909 1.3381 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3632 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8901 25 1 1.8934 -0.5137 -0.8901 26 1 1.8934 -0.5138 0.8899 27 1 1.6302 1.9728 0.8597 28 1 1.7247 1.9394 -0.9174 29 1 3.4764 2.1496 -2.4494 30 1 5.7145 0.6979 -3.3725 31 1 4.2559 -0.2801 -3.6630 32 1 5.9185 -0.1629 -6.9471 33 1 3.7993 3.4145 -0.7600 34 1 3.6345 3.3862 1.0127 35 1 5.9654 3.9023 0.3579 36 1 6.0434 2.3885 -0.5750 37 1 6.9699 2.2078 1.6767 38 1 5.8594 0.2235 2.3467 39 1 5.9825 0.2677 0.5717 40 1 3.5702 1.1571 2.2178 41 1 3.6908 -0.3481 1.2741 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062848040.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:15:28 Heat of formation + Delta-G solvation = -65.853401 kcal Electronic energy + Delta-G solvation = -20137.419966 eV Core-core repulsion = 17243.805471 eV Total energy + Delta-G solvation = -2893.614495 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.174 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.37851 -36.98379 -35.14187 -34.23390 -32.46003 -31.61970 -30.47799 -27.34908 -26.69352 -23.68306 -23.06606 -22.29567 -20.99035 -20.47346 -18.77300 -16.78131 -16.32815 -15.46704 -15.32218 -15.01644 -14.67555 -14.34075 -14.12960 -13.60692 -13.57008 -13.11973 -12.96435 -12.51905 -12.14879 -12.01031 -11.83089 -11.70977 -11.63826 -11.28304 -11.18304 -11.01192 -10.94120 -10.84405 -10.52928 -10.31375 -10.09614 -9.94009 -9.41724 -8.87658 -8.73278 -8.21832 -7.84106 -6.17793 -4.24738 3.23801 3.28782 3.30147 3.41807 4.08283 4.33863 4.44139 4.69486 4.91089 4.94577 5.18262 5.21744 5.27352 5.37705 5.45616 5.57727 5.64837 5.69201 5.72555 5.87675 5.88607 5.93376 5.99517 6.04372 6.12178 6.21737 6.25719 6.32376 6.39703 6.46679 6.51962 7.16991 7.30499 7.46652 7.48948 7.50975 7.66534 7.96654 8.65206 8.78306 9.13512 9.42366 10.92359 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.020476 B = 0.006266 C = 0.005474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.153321 B = 4467.826465 C = 5114.303954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.130 4.130 3 C -0.103 4.103 4 C -0.082 4.082 5 C 0.512 3.488 6 O -0.555 6.555 7 N -0.711 5.711 8 C 0.252 3.748 9 C -0.543 4.543 10 H 0.062 0.938 11 C 0.064 3.936 12 N -0.886 5.886 13 Si 0.903 3.097 14 H -0.275 1.275 15 H -0.285 1.285 16 H -0.275 1.275 17 C -0.102 4.102 18 C 0.053 3.947 19 N -0.691 5.691 20 C 0.045 3.955 21 C -0.087 4.087 22 H 0.053 0.947 23 H 0.052 0.948 24 H 0.051 0.949 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.388 0.612 30 H 0.023 0.977 31 H 0.025 0.975 32 H 0.266 0.734 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.036 0.964 37 H 0.338 0.662 38 H 0.067 0.933 39 H 0.057 0.943 40 H 0.067 0.933 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.421 4.837 13.822 15.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.167 4.167 3 C -0.141 4.141 4 C -0.085 4.085 5 C 0.297 3.703 6 O -0.435 6.435 7 N -0.359 5.359 8 C 0.131 3.869 9 C -0.581 4.581 10 H 0.080 0.920 11 C -0.139 4.139 12 N -0.523 5.523 13 Si 0.730 3.270 14 H -0.201 1.201 15 H -0.211 1.211 16 H -0.200 1.200 17 C -0.140 4.140 18 C -0.077 4.077 19 N -0.322 5.322 20 C -0.083 4.083 21 C -0.125 4.125 22 H 0.072 0.928 23 H 0.071 0.929 24 H 0.070 0.930 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.088 0.912 28 H 0.085 0.915 29 H 0.221 0.779 30 H 0.041 0.959 31 H 0.043 0.957 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.055 0.945 37 H 0.155 0.845 38 H 0.085 0.915 39 H 0.075 0.925 40 H 0.086 0.914 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.430 4.159 14.060 15.636 hybrid contribution 0.285 0.535 -1.690 1.796 sum -5.145 4.694 12.370 14.196 Atomic orbital electron populations 1.21752 0.95991 1.01431 1.01471 1.21619 0.95536 0.96708 1.02863 1.21610 0.92486 0.97569 1.02421 1.20970 0.96260 0.96378 0.94895 1.20271 0.80141 0.85311 0.84592 1.90605 1.43936 1.22650 1.86268 1.46459 1.52379 1.28777 1.08292 1.19044 0.93018 0.94104 0.80702 1.21193 1.33533 1.11111 0.92305 0.92025 1.24945 0.94708 0.95187 0.99107 1.69966 1.33392 1.23708 1.25275 0.86493 0.78644 0.80169 0.81727 1.20061 1.21054 1.20049 1.21624 0.95440 0.94603 1.02375 1.21921 0.95954 0.98395 0.91383 1.60396 1.20455 1.13770 1.37556 1.22097 0.96226 0.88504 1.01515 1.21417 0.95275 1.00401 0.95392 0.92759 0.92936 0.93031 0.91570 0.91552 0.91250 0.91491 0.77896 0.95948 0.95653 0.92413 0.91133 0.90569 0.90847 0.94547 0.84512 0.91460 0.92495 0.91387 0.90691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.91 37.16 0.37 -1.30 16 2 C -0.13 -1.74 5.35 -26.73 -0.14 -1.88 16 3 C -0.10 -1.32 4.26 -26.73 -0.11 -1.43 16 4 C -0.08 -1.20 0.43 -155.53 -0.07 -1.27 16 5 C 0.51 10.06 3.89 -10.99 -0.04 10.02 16 6 O -0.56 -12.99 14.10 5.56 0.08 -12.91 16 7 N -0.71 -14.93 5.35 -61.47 -0.33 -15.26 16 8 C 0.25 6.67 5.43 -5.19 -0.03 6.65 16 9 C -0.54 -14.73 9.28 -34.44 -0.32 -15.05 16 10 H 0.06 1.56 7.60 -52.48 -0.40 1.16 16 11 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 12 N -0.89 -26.15 13.29 55.43 0.74 -25.41 16 13 Si 0.90 20.86 29.54 -169.99 -5.02 15.84 16 14 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 15 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 16 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 17 C -0.10 -1.36 4.76 -26.65 -0.13 -1.48 16 18 C 0.05 0.75 6.34 -3.84 -0.02 0.72 16 19 N -0.69 -9.25 6.85 -113.82 -0.78 -10.03 16 20 C 0.05 0.67 6.28 -3.83 -0.02 0.65 16 21 C -0.09 -1.23 4.02 -26.65 -0.11 -1.34 16 22 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.07 1.09 7.41 -51.93 -0.39 0.71 16 26 H 0.07 0.86 6.26 -51.93 -0.33 0.53 16 27 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.07 0.86 7.90 -51.93 -0.41 0.45 16 29 H 0.39 7.20 7.20 -40.82 -0.29 6.90 16 30 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 33 H 0.07 0.90 7.23 -51.93 -0.38 0.53 16 34 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.04 0.63 7.31 -51.93 -0.38 0.25 16 37 H 0.34 4.00 8.90 -39.29 -0.35 3.65 16 38 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.06 1.04 5.98 -51.93 -0.31 0.73 16 40 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 41 H 0.07 1.12 6.27 -51.93 -0.33 0.79 16 LS Contribution 317.63 15.07 4.79 4.79 Total: -1.00 -30.77 317.63 -8.17 -38.94 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: -6.92 Total: 8.08 kcal Atomic # 6 Polarization: -3.31 SS G_CDS: -0.72 Total: -4.04 kcal Atomic # 7 Polarization: -50.33 SS G_CDS: -0.37 Total: -50.70 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: 0.08 Total: -12.91 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -30.77 -8.17 -38.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062848040.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.912 kcal (2) G-P(sol) polarization free energy of solvation -30.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds