Wall clock time and date at job start Mon Mar 30 2020 21:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46886 * 2 1 4 4 N 1.46971 * 109.46942 * 180.02562 * 3 2 1 5 5 C 1.32936 * 116.52187 * 90.00419 * 4 3 2 6 6 O 1.21226 * 118.33065 * 341.40445 * 5 4 3 7 7 C 1.50343 * 123.82488 * 158.85942 * 5 4 3 8 8 H 1.10325 * 107.30506 * 164.83919 * 7 5 4 9 9 C 1.49859 * 110.77933 * 282.49838 * 7 5 4 10 10 H 1.08004 * 120.00376 * 359.97438 * 9 7 5 11 11 C 1.37874 * 120.00107 * 179.97438 * 9 7 5 12 12 N 1.31517 * 119.99765 * 0.02562 * 11 9 7 13 13 Si 1.86800 * 120.00130 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.47064 * 90.00562 * 13 11 9 15 15 H 1.48504 * 109.47224 * 210.00385 * 13 11 9 16 16 H 1.48501 * 109.47141 * 330.00193 * 13 11 9 17 17 N 1.46288 * 110.01644 * 47.61391 * 7 5 4 18 18 C 1.45075 * 114.01323 * 270.50733 * 17 7 5 19 19 C 1.51974 * 114.27603 * 51.96570 * 18 17 7 20 20 C 1.45813 * 116.58750 * 271.64387 * 4 3 2 21 21 C 1.54054 * 107.73681 * 348.13846 * 20 4 3 22 22 C 1.52924 * 109.87579 * 105.32113 * 20 4 3 23 23 H 1.09000 * 109.47437 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47109 * 299.99380 * 1 2 3 25 25 H 1.09002 * 109.47508 * 59.99571 * 1 2 3 26 26 H 1.09001 * 109.46652 * 240.00345 * 2 1 3 27 27 H 1.08992 * 109.47514 * 120.00434 * 2 1 3 28 28 H 1.09002 * 109.47398 * 300.00496 * 3 2 1 29 29 H 1.09001 * 109.47194 * 60.00677 * 3 2 1 30 30 H 0.97006 * 119.99740 * 179.97438 * 12 11 9 31 31 H 1.00898 * 111.67065 * 142.15657 * 17 7 5 32 32 H 1.10214 * 108.83685 * 173.78939 * 18 17 7 33 33 H 1.09848 * 109.75297 * 288.87375 * 18 17 7 34 34 H 1.10306 * 108.53706 * 155.86923 * 19 18 17 35 35 H 1.09309 * 110.51534 * 272.36131 * 19 18 17 36 36 H 1.09004 * 109.47357 * 59.99841 * 21 20 4 37 37 H 1.09002 * 109.47229 * 180.02562 * 21 20 4 38 38 H 1.09003 * 109.47262 * 300.00239 * 21 20 4 39 39 H 1.08999 * 109.46881 * 59.99496 * 22 20 4 40 40 H 1.08999 * 109.47368 * 179.97438 * 22 20 4 41 41 H 1.09002 * 109.46777 * 299.99980 * 22 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5097 1.4425 -0.0006 5 6 4.1028 1.4428 -1.1903 6 8 3.4543 1.1027 -2.1565 7 6 5.5187 1.8933 -1.4195 8 1 5.8211 1.5308 -2.4166 9 6 5.6064 3.3893 -1.4247 10 1 4.7165 3.9830 -1.2757 11 6 6.8230 4.0079 -1.6196 12 7 7.9066 3.2851 -1.8015 13 14 6.9322 5.8727 -1.6267 14 1 7.1867 6.3590 -0.2469 15 1 8.0430 6.3002 -2.5149 16 1 5.6538 6.4415 -2.1242 17 7 6.4051 1.2822 -0.4291 18 6 6.5573 2.0596 0.7863 19 6 5.2452 2.4670 1.4359 20 6 4.1628 1.4049 1.3025 21 6 3.0892 1.6758 2.3736 22 6 4.7354 0.0100 1.5570 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.6765 1.9564 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 8.7625 3.7203 -1.9390 31 1 7.2948 1.0285 -0.8316 32 1 7.1460 1.4746 1.5115 33 1 7.1533 2.9589 0.5797 34 1 5.4260 2.6463 2.5092 35 1 4.8881 3.4119 1.0184 36 1 2.3162 0.9095 2.3152 37 1 3.5484 1.6545 3.3619 38 1 2.6433 2.6554 2.2015 39 1 5.4636 -0.2306 0.7825 40 1 5.2223 -0.0106 2.5320 41 1 3.9288 -0.7229 1.5376 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000221754328.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:18:45 Heat of formation + Delta-G solvation = -33.189428 kcal Electronic energy + Delta-G solvation = -21144.339518 eV Core-core repulsion = 18252.141439 eV Total energy + Delta-G solvation = -2892.198079 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.174 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.95052 -36.65628 -35.78203 -33.47691 -31.82316 -31.07845 -28.46117 -27.35896 -26.98284 -25.28916 -23.22909 -21.96009 -21.07268 -19.56077 -17.40949 -16.70477 -16.06089 -15.63850 -14.69010 -14.52375 -14.42280 -14.09611 -13.88168 -13.09760 -13.02892 -12.77974 -12.31835 -12.25478 -11.97207 -11.79160 -11.57816 -11.28794 -11.23636 -11.04076 -10.89793 -10.87050 -10.82496 -10.73219 -10.34416 -10.14445 -10.07023 -9.73056 -9.34965 -8.63710 -8.50863 -7.79480 -7.05124 -6.19681 -4.30351 3.17728 3.26023 3.29905 3.80222 3.88707 4.31219 5.04461 5.19537 5.27338 5.30724 5.40430 5.47087 5.59907 5.69595 5.76295 5.91358 5.96927 6.01704 6.05902 6.14958 6.17925 6.21558 6.23815 6.35285 6.44112 6.54770 6.63120 6.71635 6.77482 6.95081 7.10210 7.18153 7.24357 7.41349 7.64896 7.93648 8.58292 8.61150 8.74262 8.86082 9.32364 9.38739 10.81738 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.025827 B = 0.008189 C = 0.007596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.862211 B = 3418.356334 C = 3685.452787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.138 4.138 3 C 0.098 3.902 4 N -0.597 5.597 5 C 0.548 3.452 6 O -0.578 6.578 7 C 0.210 3.790 8 H 0.053 0.947 9 C -0.524 4.524 10 H 0.057 0.943 11 C 0.073 3.927 12 N -0.887 5.887 13 Si 0.896 3.104 14 H -0.279 1.279 15 H -0.284 1.284 16 H -0.273 1.273 17 N -0.688 5.688 18 C 0.099 3.901 19 C -0.111 4.111 20 C 0.195 3.805 21 C -0.161 4.161 22 C -0.161 4.161 23 H 0.050 0.950 24 H 0.049 0.951 25 H 0.053 0.947 26 H 0.069 0.931 27 H 0.058 0.942 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.266 0.734 31 H 0.350 0.650 32 H 0.031 0.969 33 H 0.038 0.962 34 H 0.053 0.947 35 H 0.072 0.928 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.058 0.942 39 H 0.095 0.905 40 H 0.050 0.950 41 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.693 -3.499 9.265 11.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.176 4.176 3 C -0.025 4.025 4 N -0.329 5.329 5 C 0.339 3.661 6 O -0.457 6.457 7 C 0.099 3.901 8 H 0.071 0.929 9 C -0.564 4.564 10 H 0.075 0.925 11 C -0.130 4.130 12 N -0.525 5.525 13 Si 0.724 3.276 14 H -0.205 1.205 15 H -0.210 1.210 16 H -0.198 1.198 17 N -0.321 5.321 18 C -0.031 4.031 19 C -0.150 4.150 20 C 0.110 3.890 21 C -0.219 4.219 22 C -0.220 4.220 23 H 0.069 0.931 24 H 0.068 0.932 25 H 0.072 0.928 26 H 0.088 0.912 27 H 0.076 0.924 28 H 0.088 0.912 29 H 0.093 0.907 30 H 0.075 0.925 31 H 0.170 0.830 32 H 0.049 0.951 33 H 0.056 0.944 34 H 0.072 0.928 35 H 0.091 0.909 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.114 0.886 40 H 0.069 0.931 41 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -7.252 -3.961 8.975 12.200 hybrid contribution 0.741 1.783 -0.227 1.944 sum -6.512 -2.178 8.748 11.121 Atomic orbital electron populations 1.21696 0.96193 1.01153 1.01416 1.21918 0.95058 0.98268 1.02384 1.21735 0.82179 0.96393 1.02214 1.47341 1.05264 1.74584 1.05742 1.21066 0.90883 0.73320 0.80834 1.90531 1.66232 1.48558 1.40398 1.18952 0.84708 0.93788 0.92613 0.92900 1.20986 0.94313 0.90545 1.50515 0.92498 1.24878 0.95496 0.98563 0.94112 1.69851 0.99037 1.35508 1.48110 0.86506 0.77978 0.85113 0.78039 1.20488 1.20995 1.19753 1.58803 1.19509 1.46706 1.07086 1.20840 0.94378 0.96788 0.91124 1.21722 0.95377 0.98690 0.99182 1.19913 0.92109 0.95662 0.81289 1.22610 0.99168 1.01632 0.98447 1.22386 1.01626 0.95344 1.02605 0.93104 0.93181 0.92754 0.91225 0.92357 0.91173 0.90700 0.92464 0.82953 0.95096 0.94425 0.92791 0.90916 0.92073 0.92021 0.92323 0.88631 0.93129 0.94082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.91 37.16 0.37 -1.42 16 2 C -0.14 -2.09 5.92 -26.73 -0.16 -2.25 16 3 C 0.10 1.67 4.33 -3.79 -0.02 1.65 16 4 N -0.60 -11.68 2.35 -159.48 -0.38 -12.06 16 5 C 0.55 13.08 6.40 -11.97 -0.08 13.00 16 6 O -0.58 -15.26 15.78 5.60 0.09 -15.17 16 7 C 0.21 5.26 2.39 -70.93 -0.17 5.09 16 8 H 0.05 1.50 8.15 -51.17 -0.42 1.08 16 9 C -0.52 -13.78 6.28 -34.85 -0.22 -14.00 16 10 H 0.06 1.55 7.76 -52.48 -0.41 1.14 16 11 C 0.07 1.89 4.13 -17.82 -0.07 1.82 16 12 N -0.89 -23.34 11.69 55.43 0.65 -22.69 16 13 Si 0.90 20.54 29.54 -169.99 -5.02 15.52 16 14 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 15 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 16 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 17 N -0.69 -15.17 3.75 -110.79 -0.42 -15.59 16 18 C 0.10 2.01 4.63 -5.33 -0.02 1.99 16 19 C -0.11 -2.03 4.35 -27.65 -0.12 -2.15 16 20 C 0.20 3.29 0.87 -132.07 -0.12 3.18 16 21 C -0.16 -2.15 6.79 37.71 0.26 -1.89 16 22 C -0.16 -2.58 8.03 37.12 0.30 -2.29 16 23 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.07 1.26 7.64 -51.93 -0.40 0.86 16 27 H 0.06 0.83 6.24 -51.93 -0.32 0.51 16 28 H 0.07 1.33 7.44 -51.93 -0.39 0.94 16 29 H 0.07 1.08 5.06 -51.93 -0.26 0.82 16 30 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 31 H 0.35 8.06 8.26 -39.29 -0.32 7.73 16 32 H 0.03 0.57 8.24 -51.24 -0.42 0.15 16 33 H 0.04 0.88 6.21 -51.45 -0.32 0.56 16 34 H 0.05 0.83 7.91 -51.18 -0.40 0.43 16 35 H 0.07 1.49 7.10 -51.75 -0.37 1.13 16 36 H 0.06 0.76 5.90 -51.93 -0.31 0.45 16 37 H 0.06 0.71 8.02 -51.93 -0.42 0.30 16 38 H 0.06 0.77 7.20 -51.93 -0.37 0.40 16 39 H 0.10 1.76 5.86 -51.93 -0.30 1.46 16 40 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.04 0.62 7.19 -51.93 -0.37 0.25 16 LS Contribution 303.52 15.07 4.57 4.57 Total: -1.00 -28.01 303.52 -7.18 -35.20 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -6.63 Total: 7.48 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: -0.05 Total: 2.74 kcal Atomic # 7 Polarization: -50.19 SS G_CDS: -0.14 Total: -50.34 kcal Atomic # 8 Polarization: -15.26 SS G_CDS: 0.09 Total: -15.17 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -28.01 -7.18 -35.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221754328.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.008 kcal (2) G-P(sol) polarization free energy of solvation -28.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds