Wall clock time and date at job start Mon Mar 30 2020 21:16:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08997 * 109.47627 * 2 1 4 4 C 1.50700 * 109.47113 * 240.00344 * 2 1 3 5 5 O 1.21280 * 120.00309 * 247.22654 * 4 2 1 6 6 N 1.34783 * 119.99928 * 67.22791 * 4 2 1 7 7 C 1.46498 * 120.00126 * 4.22853 * 6 4 2 8 8 C 1.46502 * 119.99956 * 184.22839 * 6 4 2 9 9 C 1.50710 * 109.46813 * 90.00141 * 8 6 4 10 10 H 1.07998 * 119.99606 * 359.97438 * 9 8 6 11 11 C 1.37871 * 119.99764 * 179.97438 * 9 8 6 12 12 N 1.31520 * 119.99980 * 179.97438 * 11 9 8 13 13 Si 1.86803 * 120.00244 * 0.02562 * 11 9 8 14 14 H 1.48491 * 109.47364 * 89.99504 * 13 11 9 15 15 H 1.48498 * 109.47015 * 210.00076 * 13 11 9 16 16 H 1.48507 * 109.46788 * 329.99336 * 13 11 9 17 17 N 1.46903 * 109.47519 * 120.00813 * 2 1 3 18 18 C 1.47481 * 110.99874 * 199.02908 * 17 2 1 19 19 H 1.09000 * 113.47942 * 23.93097 * 18 17 2 20 20 C 1.52998 * 113.47510 * 253.46090 * 18 17 2 21 21 C 1.53513 * 87.93040 * 138.69846 * 18 17 2 22 22 C 1.47479 * 110.99178 * 294.99562 * 17 2 1 23 23 H 1.08995 * 113.48432 * 336.06616 * 22 17 2 24 24 C 1.53005 * 113.47323 * 106.53109 * 22 17 2 25 25 H 1.08999 * 109.47512 * 68.63123 * 1 2 3 26 26 H 1.08998 * 109.46928 * 188.63489 * 1 2 3 27 27 H 1.09007 * 109.47023 * 308.63168 * 1 2 3 28 28 H 1.09001 * 109.46719 * 86.60149 * 7 6 4 29 29 H 1.08998 * 109.47367 * 206.60468 * 7 6 4 30 30 H 1.09004 * 109.46936 * 326.60655 * 7 6 4 31 31 H 1.09000 * 109.46896 * 209.99443 * 8 6 4 32 32 H 1.08993 * 109.47322 * 330.00528 * 8 6 4 33 33 H 0.97001 * 119.99731 * 179.97438 * 12 11 9 34 34 H 1.09003 * 109.46657 * 60.00386 * 20 18 17 35 35 H 1.08997 * 109.47168 * 180.02562 * 20 18 17 36 36 H 1.09001 * 109.47309 * 300.00829 * 20 18 17 37 37 H 1.08995 * 114.17136 * 220.32528 * 21 18 17 38 38 H 1.08998 * 114.17274 * 87.62301 * 21 18 17 39 39 H 1.08998 * 109.47135 * 59.99783 * 24 22 17 40 40 H 1.09003 * 109.46987 * 179.97438 * 24 22 17 41 41 H 1.08999 * 109.47257 * 299.99626 * 24 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2305 5 8 2.6177 -1.7671 -1.1242 6 7 1.8309 -0.1712 -2.4493 7 6 1.2067 1.1484 -2.5725 8 6 2.2363 -0.9048 -3.6508 9 6 1.0941 -1.7678 -4.1217 10 1 0.1599 -1.7699 -3.5798 11 6 1.2418 -2.5546 -5.2442 12 7 0.2451 -3.3081 -5.6549 13 14 2.8579 -2.5514 -6.1810 14 1 3.7511 -3.6024 -5.6308 15 1 2.5980 -2.8248 -7.6173 16 1 3.5093 -1.2243 -6.0398 17 7 2.0197 -0.6927 1.1993 18 6 3.4231 -0.3361 1.4795 19 1 3.7191 0.6252 1.0595 20 6 4.4133 -1.4557 1.1529 21 6 3.0497 -0.2646 2.9668 22 6 1.6473 0.0419 2.4228 23 1 1.4694 1.1040 2.2545 24 6 0.5251 -0.6282 3.2181 25 1 -0.3634 0.3744 -0.9570 26 1 -0.3633 -1.0160 0.1543 27 1 -0.3633 0.6416 0.8028 28 1 1.9725 1.9207 -2.4998 29 1 0.7045 1.2243 -3.5369 30 1 0.4788 1.2822 -1.7722 31 1 2.5044 -0.1971 -4.4354 32 1 3.0957 -1.5340 -3.4197 33 1 0.3490 -3.8614 -6.4448 34 1 4.3446 -1.7038 0.0937 35 1 5.4256 -1.1243 1.3839 36 1 4.1749 -2.3369 1.7486 37 1 3.5112 0.5642 3.5035 38 1 3.1263 -1.2164 3.4925 39 1 0.8401 -1.6270 3.5200 40 1 0.3033 -0.0340 4.1047 41 1 -0.3674 -0.7010 2.5966 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000548754607.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:16:04 Heat of formation + Delta-G solvation = 11.187210 kcal Electronic energy + Delta-G solvation = -20131.716283 eV Core-core repulsion = 17241.442520 eV Total energy + Delta-G solvation = -2890.273763 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.174 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.76322 -38.56702 -34.87174 -33.30022 -32.25107 -31.24105 -28.68482 -27.94462 -26.46127 -26.02579 -23.69932 -21.64098 -21.15834 -19.62532 -18.52145 -16.92501 -16.43852 -16.30633 -15.11039 -14.93457 -14.47551 -14.10936 -13.95911 -13.76514 -13.38552 -12.90844 -12.60547 -12.25769 -12.20998 -12.08778 -11.98413 -11.78981 -11.69400 -11.44282 -11.35295 -11.24140 -11.05366 -10.75412 -10.49381 -10.35517 -10.14151 -10.07273 -9.50462 -8.93423 -8.59207 -8.56211 -7.62589 -6.06668 -4.05155 3.30506 3.36319 3.38456 3.39606 3.67094 4.12416 4.41435 4.47827 4.69466 4.94122 5.14470 5.17447 5.21522 5.27068 5.27942 5.35572 5.51249 5.59238 5.62809 5.73653 5.76469 5.81711 5.84419 5.91375 6.00163 6.04045 6.14930 6.23168 6.27387 6.40765 6.52187 6.70473 6.81957 6.97456 7.19380 7.41695 7.63674 8.30782 8.50078 8.96268 9.08391 9.54019 11.06790 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.030108 B = 0.005860 C = 0.005503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.749297 B = 4777.305108 C = 5087.088022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.032 3.968 3 H 0.061 0.939 4 C 0.515 3.485 5 O -0.517 6.517 6 N -0.600 5.600 7 C 0.071 3.929 8 C 0.217 3.783 9 C -0.527 4.527 10 H 0.074 0.926 11 C 0.072 3.928 12 N -0.898 5.898 13 Si 0.876 3.124 14 H -0.273 1.273 15 H -0.285 1.285 16 H -0.267 1.267 17 N -0.435 5.435 18 C 0.030 3.970 19 H 0.069 0.931 20 C -0.137 4.137 21 C -0.139 4.139 22 C 0.022 3.978 23 H 0.073 0.927 24 C -0.133 4.133 25 H 0.077 0.923 26 H 0.072 0.928 27 H 0.059 0.941 28 H 0.041 0.959 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.028 0.972 32 H 0.036 0.964 33 H 0.264 0.736 34 H 0.082 0.918 35 H 0.046 0.954 36 H 0.057 0.943 37 H 0.071 0.929 38 H 0.093 0.907 39 H 0.062 0.938 40 H 0.055 0.945 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.390 11.517 15.250 19.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.080 4.080 3 H 0.078 0.922 4 C 0.300 3.700 5 O -0.393 6.393 6 N -0.333 5.333 7 C -0.073 4.073 8 C 0.096 3.904 9 C -0.566 4.566 10 H 0.092 0.908 11 C -0.130 4.130 12 N -0.537 5.537 13 Si 0.703 3.297 14 H -0.199 1.199 15 H -0.211 1.211 16 H -0.191 1.191 17 N -0.159 5.159 18 C -0.079 4.079 19 H 0.087 0.913 20 C -0.194 4.194 21 C -0.176 4.176 22 C -0.087 4.087 23 H 0.091 0.909 24 C -0.191 4.191 25 H 0.096 0.904 26 H 0.091 0.909 27 H 0.078 0.922 28 H 0.060 0.940 29 H 0.095 0.905 30 H 0.087 0.913 31 H 0.046 0.954 32 H 0.054 0.946 33 H 0.074 0.926 34 H 0.101 0.899 35 H 0.065 0.935 36 H 0.076 0.924 37 H 0.089 0.911 38 H 0.112 0.888 39 H 0.081 0.919 40 H 0.074 0.926 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.437 10.116 14.999 18.415 hybrid contribution 0.781 0.930 -0.775 1.441 sum 4.219 11.046 14.223 18.496 Atomic orbital electron populations 1.21967 0.92334 1.03666 1.02561 1.22198 0.97628 0.96082 0.92132 0.92154 1.20016 0.80302 0.85868 0.83801 1.90610 1.40869 1.21972 1.85807 1.47797 1.60328 1.18435 1.06777 1.21934 0.97353 0.84370 1.03620 1.19640 0.97002 0.92083 0.81659 1.21342 0.99754 1.24295 1.11205 0.90781 1.24856 0.96430 0.94749 0.96979 1.69902 1.31440 1.27320 1.24994 0.86848 0.84458 0.79142 0.79213 1.19903 1.21098 1.19137 1.68997 1.04485 1.43155 0.99223 1.23266 0.91389 0.98338 0.94929 0.91302 1.21704 0.95860 0.97238 1.04637 1.23372 0.95687 1.02458 0.96122 1.23315 0.95951 0.96956 0.92520 0.90943 1.21662 0.97843 1.00750 0.98798 0.90405 0.90891 0.92201 0.94028 0.90510 0.91259 0.95417 0.94566 0.92599 0.89940 0.93477 0.92384 0.91079 0.88805 0.91926 0.92628 0.92173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 7.93 37.15 0.29 -1.81 16 2 C 0.03 0.51 1.28 -68.87 -0.09 0.42 16 3 H 0.06 0.83 7.20 -51.93 -0.37 0.45 16 4 C 0.51 10.77 6.81 -10.98 -0.07 10.69 16 5 O -0.52 -12.86 13.27 5.56 0.07 -12.79 16 6 N -0.60 -12.61 2.86 -182.95 -0.52 -13.13 16 7 C 0.07 1.11 9.80 59.85 0.59 1.70 16 8 C 0.22 5.41 4.25 -5.19 -0.02 5.38 16 9 C -0.53 -15.36 9.94 -34.44 -0.34 -15.70 16 10 H 0.07 2.36 8.06 -52.49 -0.42 1.94 16 11 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 12 N -0.90 -28.01 13.96 55.43 0.77 -27.24 16 13 Si 0.88 21.89 27.47 -169.99 -4.67 17.22 16 14 H -0.27 -6.89 7.11 56.52 0.40 -6.48 16 15 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 16 H -0.27 -6.28 6.54 56.52 0.37 -5.91 16 17 N -0.43 -6.63 5.28 -221.83 -1.17 -7.80 16 18 C 0.03 0.41 3.40 -71.44 -0.24 0.17 16 19 H 0.07 0.90 7.62 -51.93 -0.40 0.50 16 20 C -0.14 -2.06 9.66 37.16 0.36 -1.70 16 21 C -0.14 -1.49 7.53 -26.20 -0.20 -1.68 16 22 C 0.02 0.25 2.78 -71.43 -0.20 0.05 16 23 H 0.07 0.74 7.84 -51.93 -0.41 0.33 16 24 C -0.13 -1.38 9.89 37.16 0.37 -1.01 16 25 H 0.08 1.11 5.32 -51.93 -0.28 0.84 16 26 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 27 H 0.06 0.67 7.16 -51.93 -0.37 0.30 16 28 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.08 1.24 8.05 -51.93 -0.42 0.82 16 30 H 0.07 0.92 4.20 -51.93 -0.22 0.71 16 31 H 0.03 0.66 7.13 -51.93 -0.37 0.29 16 32 H 0.04 0.97 6.80 -51.93 -0.35 0.61 16 33 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 34 H 0.08 1.55 5.76 -51.93 -0.30 1.25 16 35 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.87 7.97 -51.93 -0.41 0.45 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.09 1.01 7.86 -51.93 -0.41 0.60 16 39 H 0.06 0.69 7.97 -51.93 -0.41 0.28 16 40 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.06 0.66 7.06 -51.93 -0.37 0.29 16 LS Contribution 317.34 15.07 4.78 4.78 Total: -1.00 -33.88 317.34 -7.18 -41.06 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -6.79 Total: -0.64 kcal Atomic # 6 Polarization: -1.81 SS G_CDS: 0.34 Total: -1.47 kcal Atomic # 7 Polarization: -47.25 SS G_CDS: -0.92 Total: -48.17 kcal Atomic # 8 Polarization: -12.86 SS G_CDS: 0.07 Total: -12.79 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.67 Total: 17.22 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -33.88 -7.18 -41.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548754607.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.250 kcal (2) G-P(sol) polarization free energy of solvation -33.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds