Wall clock time and date at job start Mon Mar 30 2020 21:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46500 * 109.47058 * 2 1 4 4 C 1.46765 * 124.35195 * 89.99721 * 3 2 1 5 5 C 1.54479 * 105.47385 * 162.98454 * 4 3 2 6 6 C 1.54632 * 101.76649 * 25.41519 * 5 4 3 7 7 H 1.09000 * 110.49006 * 216.39030 * 6 5 4 8 8 N 1.46506 * 110.48320 * 93.87761 * 6 5 4 9 9 C 1.34779 * 119.99461 * 155.00174 * 8 6 5 10 10 O 1.21586 * 120.00280 * 0.02562 * 9 8 6 11 11 N 1.34774 * 119.99580 * 180.02562 * 9 8 6 12 12 C 1.46498 * 120.00190 * 180.02562 * 11 9 8 13 13 C 1.50695 * 109.47384 * 179.97438 * 12 11 9 14 14 H 1.08001 * 120.00038 * 0.02562 * 13 12 11 15 15 C 1.37879 * 120.00066 * 180.02562 * 13 12 11 16 16 N 1.31512 * 120.00012 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 120.00300 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47291 * 59.99287 * 17 15 13 19 19 H 1.48496 * 109.47436 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46878 * 300.00065 * 17 15 13 21 21 C 1.34422 * 124.34944 * 269.99882 * 3 2 1 22 22 O 1.21284 * 124.94059 * 0.44066 * 21 3 2 23 23 H 1.08995 * 109.46925 * 60.00310 * 1 2 3 24 24 H 1.09002 * 109.46997 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.47431 * 299.99845 * 1 2 3 26 26 H 1.09000 * 109.47750 * 239.99794 * 2 1 3 27 27 H 1.08999 * 109.47630 * 119.99676 * 2 1 3 28 28 H 1.09005 * 110.24336 * 43.98700 * 4 3 2 29 29 H 1.08995 * 110.31795 * 282.02107 * 4 3 2 30 30 H 1.09003 * 110.96919 * 267.30106 * 5 4 3 31 31 H 1.08996 * 110.97294 * 143.53562 * 5 4 3 32 32 H 0.96995 * 119.99814 * 335.00122 * 8 6 5 33 33 H 0.97000 * 120.00210 * 359.97438 * 11 9 8 34 34 H 1.09001 * 109.47360 * 300.00013 * 12 11 9 35 35 H 1.09003 * 109.46856 * 59.99681 * 12 11 9 36 36 H 0.96998 * 120.00234 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2943 2.1620 1.2117 5 6 3.1743 3.3442 0.7486 6 6 2.7694 3.4754 -0.7379 7 1 3.6321 3.7483 -1.3457 8 7 1.7008 4.4656 -0.8927 9 6 1.5393 5.1045 -2.0685 10 8 2.2801 4.8586 -3.0007 11 7 0.5566 6.0158 -2.2107 12 6 0.3806 6.7098 -3.4888 13 6 -0.7778 7.6680 -3.3848 14 1 -1.3277 7.7520 -2.4591 15 6 -1.1356 8.4376 -4.4715 16 7 -0.4657 8.3357 -5.5986 17 14 -2.5711 9.6259 -4.3424 18 1 -2.2964 10.6198 -3.2737 19 1 -2.7496 10.3293 -5.6380 20 1 -3.8083 8.8737 -4.0124 21 6 2.2711 2.0963 -1.1098 22 8 2.1210 1.6945 -2.2443 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 2.8323 1.5532 1.9383 29 1 1.3643 2.5309 1.6442 30 1 4.2331 3.1034 0.8447 31 1 2.9306 4.2517 1.3009 32 1 1.1096 4.6614 -0.1491 33 1 -0.0346 6.2116 -1.4671 34 1 1.2888 7.2620 -3.7306 35 1 0.1792 5.9805 -4.2735 36 1 -0.7177 8.8767 -6.3632 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000802306607.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:17:37 Heat of formation + Delta-G solvation = -63.336832 kcal Electronic energy + Delta-G solvation = -18977.384345 eV Core-core repulsion = 15882.619971 eV Total energy + Delta-G solvation = -3094.764374 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 255.137 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.73562 -38.79329 -36.45982 -34.96832 -34.00256 -32.61682 -31.99070 -29.26734 -27.62037 -26.41016 -23.76356 -22.74748 -21.69925 -20.34877 -19.39607 -18.20357 -17.08400 -16.49401 -16.04001 -15.60008 -15.19497 -14.67019 -14.55431 -13.96018 -13.85848 -13.61579 -13.53249 -13.13562 -12.94012 -12.56073 -12.07657 -11.92776 -11.88325 -11.73090 -11.43471 -11.24380 -10.93602 -10.85263 -10.26469 -10.12867 -9.37844 -9.34217 -8.84898 -8.71531 -8.63548 -7.73549 -6.10786 -4.17578 2.45057 2.85492 3.28482 3.32700 3.34504 3.51558 3.91049 4.21267 4.36148 4.37289 4.60641 4.76462 4.88825 5.02863 5.10655 5.15453 5.20943 5.24963 5.48422 5.50509 5.55014 5.68194 5.77364 6.00111 6.45259 6.70679 7.01548 7.11870 7.55073 7.57173 7.63072 7.92364 8.07079 8.23753 8.79762 8.96255 9.36362 9.51690 10.99460 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.033100 B = 0.004209 C = 0.004121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.728145 B = 6650.946850 C = 6792.484145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.123 3.877 3 N -0.625 5.625 4 C 0.103 3.897 5 C -0.142 4.142 6 C 0.138 3.862 7 H 0.121 0.879 8 N -0.739 5.739 9 C 0.692 3.308 10 O -0.585 6.585 11 N -0.727 5.727 12 C 0.267 3.733 13 C -0.542 4.542 14 H 0.062 0.938 15 C 0.064 3.936 16 N -0.885 5.885 17 Si 0.904 3.096 18 H -0.276 1.276 19 H -0.285 1.285 20 H -0.276 1.276 21 C 0.503 3.497 22 O -0.504 6.504 23 H 0.061 0.939 24 H 0.065 0.935 25 H 0.056 0.944 26 H 0.080 0.920 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.096 0.904 31 H 0.099 0.901 32 H 0.394 0.606 33 H 0.386 0.614 34 H 0.026 0.974 35 H 0.025 0.975 36 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.451 -12.976 19.035 23.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.001 3.999 3 N -0.362 5.362 4 C -0.020 4.020 5 C -0.180 4.180 6 C 0.028 3.972 7 H 0.139 0.861 8 N -0.398 5.398 9 C 0.392 3.608 10 O -0.462 6.462 11 N -0.379 5.379 12 C 0.146 3.854 13 C -0.581 4.581 14 H 0.080 0.920 15 C -0.140 4.140 16 N -0.522 5.522 17 Si 0.732 3.268 18 H -0.201 1.201 19 H -0.211 1.211 20 H -0.201 1.201 21 C 0.288 3.712 22 O -0.375 6.375 23 H 0.080 0.920 24 H 0.084 0.916 25 H 0.075 0.925 26 H 0.099 0.901 27 H 0.094 0.906 28 H 0.097 0.903 29 H 0.088 0.912 30 H 0.114 0.886 31 H 0.117 0.883 32 H 0.228 0.772 33 H 0.218 0.782 34 H 0.044 0.956 35 H 0.043 0.957 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.036 -13.383 17.251 22.407 hybrid contribution -1.447 0.766 0.799 1.822 sum 3.589 -12.617 18.050 22.313 Atomic orbital electron populations 1.22162 0.95848 1.02204 1.02649 1.21306 0.94395 0.81301 1.02853 1.48386 1.66782 1.13768 1.07287 1.22063 0.99434 0.92906 0.87581 1.22943 1.01098 0.99181 0.94771 1.21271 0.92572 0.86166 0.97217 0.86098 1.44913 1.36487 1.43688 1.14748 1.16158 0.82512 0.79801 0.82348 1.90917 1.47723 1.68489 1.39092 1.45687 1.32390 1.41878 1.17959 1.18996 0.96707 0.90993 0.78708 1.21180 1.15258 1.22955 0.98678 0.92027 1.24943 0.96992 0.97081 0.94987 1.69971 1.39873 1.40092 1.02290 0.86472 0.82226 0.80757 0.77391 1.20111 1.21079 1.20131 1.21536 0.77340 0.87869 0.84486 1.90761 1.51064 1.74614 1.21092 0.92032 0.91562 0.92512 0.90134 0.90582 0.90270 0.91201 0.88561 0.88252 0.77227 0.78238 0.95648 0.95682 0.92406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.56 10.24 37.16 0.38 -1.18 16 2 C 0.12 1.14 6.65 -4.04 -0.03 1.11 16 3 N -0.63 -6.77 2.93 -172.42 -0.51 -7.28 16 4 C 0.10 0.70 7.35 -3.12 -0.02 0.68 16 5 C -0.14 -1.04 6.78 -25.10 -0.17 -1.21 16 6 C 0.14 1.87 3.28 -67.94 -0.22 1.65 16 7 H 0.12 1.88 7.55 -51.93 -0.39 1.49 16 8 N -0.74 -11.20 5.10 -58.68 -0.30 -11.50 16 9 C 0.69 14.94 8.56 -86.92 -0.74 14.20 16 10 O -0.59 -15.55 15.99 5.29 0.08 -15.46 16 11 N -0.73 -16.05 5.55 -66.42 -0.37 -16.42 16 12 C 0.27 7.38 5.43 -5.20 -0.03 7.35 16 13 C -0.54 -15.04 9.28 -34.44 -0.32 -15.36 16 14 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 15 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 16 N -0.88 -26.68 13.29 55.43 0.74 -25.94 16 17 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 18 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 19 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 20 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 21 C 0.50 7.87 7.66 -10.86 -0.08 7.78 16 22 O -0.50 -10.65 17.60 5.55 0.10 -10.56 16 23 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.08 0.86 7.93 -51.93 -0.41 0.45 16 27 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.10 0.56 8.07 -51.93 -0.42 0.14 16 32 H 0.39 4.50 8.65 -40.82 -0.35 4.15 16 33 H 0.39 7.15 8.34 -40.82 -0.34 6.81 16 34 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.27 7.52 8.31 -40.82 -0.34 7.19 16 LS Contribution 311.72 15.07 4.70 4.70 Total: -1.00 -37.80 311.72 -7.17 -44.96 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -5.25 Total: 4.63 kcal Atomic # 6 Polarization: 18.06 SS G_CDS: -1.34 Total: 16.73 kcal Atomic # 7 Polarization: -60.69 SS G_CDS: -0.44 Total: -61.13 kcal Atomic # 8 Polarization: -26.20 SS G_CDS: 0.18 Total: -26.02 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -37.80 -7.17 -44.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000802306607.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.372 kcal (2) G-P(sol) polarization free energy of solvation -37.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds