Wall clock time and date at job start Mon Mar 30 2020 21:19:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42899 * 113.99989 * 2 1 4 4 H 1.09011 * 109.49817 * 29.93335 * 3 2 1 5 5 C 1.53195 * 109.49725 * 269.83875 * 3 2 1 6 6 N 1.46928 * 108.77274 * 294.67949 * 5 3 2 7 7 C 1.34777 * 120.62699 * 126.41563 * 6 5 3 8 8 O 1.21281 * 120.00174 * 354.56266 * 7 6 5 9 9 C 1.50700 * 119.99790 * 174.56726 * 7 6 5 10 10 H 1.09003 * 109.46850 * 334.65883 * 9 7 6 11 11 C 1.52998 * 109.46702 * 214.66399 * 9 7 6 12 12 C 1.50697 * 109.47238 * 94.66380 * 9 7 6 13 13 H 1.07994 * 120.00168 * 359.97438 * 12 9 7 14 14 C 1.37878 * 119.99630 * 179.97438 * 12 9 7 15 15 N 1.31513 * 120.00119 * 0.02562 * 14 12 9 16 16 Si 1.86803 * 119.99599 * 179.97438 * 14 12 9 17 17 H 1.48494 * 109.47422 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.47134 * 120.00586 * 16 14 12 19 19 H 1.48501 * 109.46865 * 239.99973 * 16 14 12 20 20 C 1.46920 * 118.74017 * 306.39711 * 6 5 3 21 21 C 1.53191 * 108.77959 * 53.60464 * 20 6 5 22 22 C 1.53039 * 109.31468 * 305.36704 * 21 20 6 23 23 H 1.09003 * 109.45979 * 301.34520 * 22 21 20 24 24 C 1.52997 * 109.44964 * 181.37423 * 22 21 20 25 25 H 1.08999 * 109.47427 * 300.00600 * 1 2 3 26 26 H 1.09000 * 109.47160 * 60.00071 * 1 2 3 27 27 H 1.09002 * 109.47560 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.58773 * 54.46945 * 5 3 2 29 29 H 1.08997 * 109.58356 * 174.89526 * 5 3 2 30 30 H 1.08998 * 109.47093 * 184.90992 * 11 9 7 31 31 H 1.09005 * 109.47389 * 304.90744 * 11 9 7 32 32 H 1.09004 * 109.47078 * 64.90970 * 11 9 7 33 33 H 0.97004 * 120.00040 * 179.97438 * 15 14 12 34 34 H 1.09007 * 109.58786 * 173.39512 * 20 6 5 35 35 H 1.09004 * 109.58462 * 293.67313 * 20 6 5 36 36 H 1.09003 * 109.49812 * 185.41046 * 21 20 6 37 37 H 1.09009 * 109.49635 * 65.31482 * 21 20 6 38 38 H 1.08993 * 109.47579 * 299.96781 * 24 22 21 39 39 H 1.08998 * 109.47095 * 59.96960 * 24 22 21 40 40 H 1.09003 * 109.47271 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3447 2.0001 0.5128 5 6 2.2219 1.7709 -1.4441 6 7 3.2198 0.9000 -2.0801 7 6 2.9473 0.2805 -3.2457 8 8 1.8379 0.3594 -3.7295 9 6 4.0210 -0.5103 -3.9477 10 1 5.0005 -0.1286 -3.6595 11 6 3.8463 -0.3752 -5.4616 12 6 3.9125 -1.9617 -3.5570 13 1 3.1433 -2.2796 -2.8689 14 6 4.7953 -2.8837 -4.0782 15 7 5.7323 -2.4964 -4.9158 16 14 4.6612 -4.6827 -3.5934 17 1 3.5323 -4.8569 -2.6446 18 1 4.4198 -5.5055 -4.8058 19 1 5.9249 -5.1160 -2.9448 20 6 4.5205 0.7176 -1.4217 21 6 4.2830 0.2640 0.0221 22 6 3.3593 1.2639 0.7214 23 1 3.8134 2.2546 0.6994 24 6 3.1476 0.8323 2.1739 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.2807 1.7077 -1.9901 29 1 2.5802 2.8003 -1.4474 30 1 4.5676 -1.0156 -5.9692 31 1 2.8357 -0.6751 -5.7390 32 1 4.0111 0.6615 -5.7553 33 1 6.3536 -3.1450 -5.2822 34 1 5.0959 -0.0406 -1.9530 35 1 5.0674 1.6605 -1.4255 36 1 5.2355 0.2177 0.5502 37 1 3.8182 -0.7220 0.0219 38 1 2.6935 -0.1583 2.1961 39 1 4.1082 0.8032 2.6880 40 1 2.4900 1.5445 2.6724 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597540708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:19:03 Heat of formation + Delta-G solvation = -92.264876 kcal Electronic energy + Delta-G solvation = -20618.250625 eV Core-core repulsion = 17625.772180 eV Total energy + Delta-G solvation = -2992.478444 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.79049 -37.90588 -35.74690 -33.76178 -33.21043 -30.70146 -29.78814 -27.85262 -26.39272 -25.14706 -23.47671 -22.87422 -21.64611 -19.85660 -18.16301 -16.42412 -16.27007 -15.93526 -15.47701 -15.27068 -14.90213 -14.24080 -13.78977 -13.60160 -13.35150 -12.93981 -12.77088 -12.73707 -12.16468 -11.95615 -11.75437 -11.44608 -11.39980 -11.09494 -10.95786 -10.76300 -10.68239 -10.47810 -10.35802 -10.22960 -10.15783 -9.85930 -9.43394 -8.95762 -8.54757 -8.25045 -7.82938 -6.04982 -4.11797 3.29591 3.37520 3.43464 3.73049 3.88758 4.04531 4.45456 4.83698 4.92797 5.04109 5.24380 5.26431 5.38689 5.55494 5.56928 5.62957 5.69018 5.77075 5.83579 5.89409 5.95643 6.02882 6.06897 6.13031 6.32814 6.41249 6.47423 6.75661 6.85249 7.05410 7.15687 7.26766 7.48780 7.61925 7.80637 8.02590 8.23717 8.40517 8.90042 9.32170 9.53643 11.00845 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.021215 B = 0.007464 C = 0.006890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.531516 B = 3750.314171 C = 4062.655925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.365 6.365 3 C 0.080 3.920 4 H 0.061 0.939 5 C 0.088 3.912 6 N -0.612 5.612 7 C 0.534 3.466 8 O -0.567 6.567 9 C 0.031 3.969 10 H 0.045 0.955 11 C -0.127 4.127 12 C -0.500 4.500 13 H 0.059 0.941 14 C 0.065 3.935 15 N -0.888 5.888 16 Si 0.897 3.103 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.283 1.283 20 C 0.109 3.891 21 C -0.124 4.124 22 C -0.087 4.087 23 H 0.077 0.923 24 C -0.142 4.142 25 H 0.034 0.966 26 H 0.041 0.959 27 H 0.082 0.918 28 H 0.087 0.913 29 H 0.063 0.937 30 H 0.090 0.910 31 H 0.038 0.962 32 H 0.008 0.992 33 H 0.262 0.738 34 H 0.109 0.891 35 H 0.052 0.948 36 H 0.068 0.932 37 H 0.080 0.920 38 H 0.062 0.938 39 H 0.053 0.947 40 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.166 8.182 11.980 14.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.283 6.283 3 C 0.021 3.979 4 H 0.079 0.921 5 C -0.036 4.036 6 N -0.346 5.346 7 C 0.326 3.674 8 O -0.445 6.445 9 C 0.010 3.990 10 H 0.063 0.937 11 C -0.185 4.185 12 C -0.539 4.539 13 H 0.077 0.923 14 C -0.137 4.137 15 N -0.527 5.527 16 Si 0.724 3.276 17 H -0.196 1.196 18 H -0.209 1.209 19 H -0.209 1.209 20 C -0.014 4.014 21 C -0.162 4.162 22 C -0.106 4.106 23 H 0.095 0.905 24 C -0.200 4.200 25 H 0.052 0.948 26 H 0.059 0.941 27 H 0.100 0.900 28 H 0.106 0.894 29 H 0.081 0.919 30 H 0.108 0.892 31 H 0.057 0.943 32 H 0.027 0.973 33 H 0.072 0.928 34 H 0.127 0.873 35 H 0.070 0.930 36 H 0.086 0.914 37 H 0.099 0.901 38 H 0.081 0.919 39 H 0.072 0.928 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -3.496 7.973 11.597 14.501 hybrid contribution -0.271 -0.671 0.321 0.792 sum -3.767 7.302 11.918 14.476 Atomic orbital electron populations 1.22733 0.81841 1.02562 0.99237 1.88011 1.18790 1.26719 1.94789 1.22526 0.94717 0.85340 0.95292 0.92134 1.21912 0.94986 0.93231 0.93488 1.48028 1.15023 1.48316 1.23239 1.21905 0.90311 0.76227 0.78949 1.90490 1.24913 1.62414 1.66694 1.18925 0.92014 0.94965 0.93116 0.93687 1.21652 1.01801 0.97817 0.97277 1.20822 1.15325 0.90547 1.27175 0.92263 1.24902 0.95020 0.98975 0.94796 1.69892 1.17745 1.34312 1.30729 0.86447 0.77983 0.84674 0.78463 1.19644 1.20927 1.20916 1.21740 0.85143 1.01369 0.93146 1.21877 0.98874 1.00236 0.95243 1.21227 0.94504 0.99894 0.94967 0.90469 1.21761 1.01206 1.01930 0.95081 0.94786 0.94080 0.89951 0.89423 0.91935 0.89183 0.94326 0.97339 0.92844 0.87311 0.92974 0.91362 0.90139 0.91875 0.92755 0.93423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.82 101.05 1.09 1.55 16 2 O -0.36 -6.09 8.93 -35.23 -0.31 -6.41 16 3 C 0.08 1.14 2.36 -26.61 -0.06 1.07 16 4 H 0.06 0.71 7.79 -51.92 -0.40 0.31 16 5 C 0.09 1.45 6.08 -3.71 -0.02 1.42 16 6 N -0.61 -12.09 2.91 -172.77 -0.50 -12.59 16 7 C 0.53 12.97 6.63 -10.98 -0.07 12.90 16 8 O -0.57 -15.21 15.58 5.56 0.09 -15.12 16 9 C 0.03 0.79 1.84 -92.93 -0.17 0.62 16 10 H 0.05 1.15 6.20 -51.93 -0.32 0.83 16 11 C -0.13 -3.30 8.78 37.16 0.33 -2.97 16 12 C -0.50 -13.90 8.42 -34.44 -0.29 -14.19 16 13 H 0.06 1.72 7.74 -52.49 -0.41 1.31 16 14 C 0.06 1.77 5.29 -17.82 -0.09 1.68 16 15 N -0.89 -24.76 11.29 55.43 0.63 -24.14 16 16 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 17 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 C 0.11 1.87 6.15 -3.71 -0.02 1.85 16 21 C -0.12 -1.85 5.22 -26.61 -0.14 -1.99 16 22 C -0.09 -1.11 2.51 -90.58 -0.23 -1.34 16 23 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 24 C -0.14 -1.58 9.06 37.16 0.34 -1.24 16 25 H 0.03 0.37 8.09 -51.93 -0.42 -0.05 16 26 H 0.04 0.58 7.80 -51.93 -0.41 0.18 16 27 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.09 1.60 6.66 -51.93 -0.35 1.26 16 29 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.09 2.45 5.95 -51.93 -0.31 2.15 16 31 H 0.04 1.02 7.68 -51.93 -0.40 0.62 16 32 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 33 H 0.26 6.92 8.31 -40.82 -0.34 6.59 16 34 H 0.11 2.14 5.52 -51.92 -0.29 1.86 16 35 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.08 1.43 7.61 -51.92 -0.40 1.04 16 38 H 0.06 0.79 7.72 -51.93 -0.40 0.39 16 39 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 314.95 15.07 4.75 4.75 Total: -1.00 -31.41 314.95 -6.34 -37.75 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -6.61 Total: 0.04 kcal Atomic # 6 Polarization: -1.31 SS G_CDS: 0.65 Total: -0.65 kcal Atomic # 7 Polarization: -36.85 SS G_CDS: 0.12 Total: -36.73 kcal Atomic # 8 Polarization: -21.30 SS G_CDS: -0.23 Total: -21.53 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -31.41 -6.34 -37.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597540708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.517 kcal (2) G-P(sol) polarization free energy of solvation -31.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds