Wall clock time and date at job start Mon Mar 30 2020 21:18:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.86793 * 2 1 4 4 C 1.54106 * 109.87776 * 238.99990 * 2 1 3 5 5 C 1.54818 * 104.18506 * 238.54469 * 4 2 1 6 6 H 1.08995 * 110.90480 * 97.34820 * 5 4 2 7 7 C 1.50700 * 110.90712 * 220.92125 * 5 4 2 8 8 O 1.21283 * 119.99803 * 118.54463 * 7 5 4 9 9 N 1.34777 * 119.99675 * 298.82339 * 7 5 4 10 10 C 1.46497 * 119.99525 * 179.72583 * 9 7 5 11 11 C 1.52999 * 109.46992 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47306 * 180.02562 * 11 10 9 13 13 C 1.50698 * 109.47245 * 180.02562 * 12 11 10 14 14 H 1.08001 * 120.00092 * 359.97438 * 13 12 11 15 15 C 1.37882 * 120.00154 * 180.02562 * 13 12 11 16 16 N 1.31511 * 119.99696 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99906 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47329 * 359.97438 * 17 15 13 19 19 H 1.48507 * 109.47077 * 119.99763 * 17 15 13 20 20 H 1.48504 * 109.47058 * 239.99517 * 17 15 13 21 21 C 1.54994 * 102.08971 * 339.11820 * 5 4 2 22 22 H 1.09005 * 110.62219 * 278.52019 * 21 5 4 23 23 C 1.53006 * 110.61618 * 155.52635 * 21 5 4 24 24 O 1.43738 * 109.88296 * 121.16557 * 2 1 3 25 25 H 1.09000 * 109.47297 * 181.00253 * 1 2 3 26 26 H 1.08996 * 109.46849 * 301.00759 * 1 2 3 27 27 H 1.08998 * 109.47141 * 61.00237 * 1 2 3 28 28 H 1.09003 * 110.48776 * 119.87279 * 4 2 1 29 29 H 1.08991 * 110.48661 * 357.21704 * 4 2 1 30 30 H 0.97000 * 119.99894 * 359.71837 * 9 7 5 31 31 H 1.08995 * 109.47421 * 299.99467 * 10 9 7 32 32 H 1.09001 * 109.47621 * 60.00103 * 10 9 7 33 33 H 1.09009 * 109.47378 * 299.99899 * 11 10 9 34 34 H 1.08993 * 109.47209 * 59.99808 * 11 10 9 35 35 H 1.08995 * 109.47215 * 299.99822 * 12 11 10 36 36 H 1.09001 * 109.47513 * 60.00266 * 12 11 10 37 37 H 0.97008 * 120.00088 * 180.02562 * 16 15 13 38 38 H 1.08995 * 109.47290 * 59.99812 * 23 21 5 39 39 H 1.09004 * 109.47319 * 179.97438 * 23 21 5 40 40 H 1.09005 * 109.46833 * 299.99637 * 23 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9004 1.0252 0.0000 4 6 2.0540 -0.7464 -1.2422 5 6 2.9196 -1.8905 -0.6603 6 1 2.3541 -2.8212 -0.6145 7 6 4.1827 -2.0705 -1.4623 8 8 5.2634 -1.9120 -0.9351 9 7 4.1113 -2.4020 -2.7667 10 6 5.3391 -2.5710 -3.5477 11 6 4.9803 -2.9441 -4.9875 12 6 6.2626 -3.1213 -5.8031 13 6 5.9092 -3.4882 -7.2214 14 1 4.8736 -3.5857 -7.5119 15 6 6.9080 -3.7004 -8.1479 16 7 8.1691 -3.5821 -7.7940 17 14 6.4699 -4.1558 -9.9057 18 1 4.9932 -4.2254 -10.0457 19 1 7.0075 -3.1273 -10.8323 20 1 7.0609 -5.4774 -10.2366 21 6 3.2379 -1.3652 0.7627 22 1 4.0685 -0.6598 0.7346 23 6 3.5475 -2.5269 1.7091 24 8 2.0188 -0.6995 1.1566 25 1 -0.3634 -1.0275 0.0180 26 1 -0.3633 0.5294 0.8808 27 1 -0.3633 0.4982 -0.8988 28 1 2.6620 -0.0832 -1.8576 29 1 1.2246 -1.1523 -1.8214 30 1 3.2469 -2.5288 -3.1882 31 1 5.9036 -1.6387 -3.5436 32 1 5.9437 -3.3638 -3.1073 33 1 4.4160 -3.8767 -4.9914 34 1 4.3755 -2.1517 -5.4282 35 1 6.8273 -2.1890 -5.7993 36 1 6.8671 -3.9140 -5.3623 37 1 8.8718 -3.7311 -8.4459 38 1 4.4095 -3.0797 1.3359 39 1 3.7688 -2.1370 2.7027 40 1 2.6851 -3.1914 1.7629 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601037607.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:18:31 Heat of formation + Delta-G solvation = -114.517041 kcal Electronic energy + Delta-G solvation = -18835.996037 eV Core-core repulsion = 15842.552666 eV Total energy + Delta-G solvation = -2993.443371 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.59167 -38.69236 -35.49255 -33.46635 -32.92897 -32.66953 -31.12010 -29.09114 -26.83681 -24.87543 -23.22331 -21.79291 -21.43766 -20.73266 -19.77706 -17.60098 -16.50382 -16.20278 -15.93979 -15.39203 -15.01715 -14.93826 -14.46877 -14.14029 -13.81570 -13.56101 -13.11334 -12.68915 -12.42319 -12.31773 -12.14571 -12.03658 -11.88170 -11.68410 -11.40897 -11.10458 -10.94755 -10.92130 -10.77700 -10.59371 -9.95166 -9.91486 -9.82442 -9.39418 -9.13449 -8.84855 -8.40651 -6.04964 -4.08209 2.65730 3.23059 3.27714 3.35418 3.38819 3.56762 4.24304 4.34429 4.41636 4.55695 4.71479 4.93154 5.00949 5.06381 5.20735 5.29715 5.30971 5.34191 5.43556 5.58523 5.65419 5.71364 5.72519 5.74201 5.86440 5.92484 6.04879 6.10963 6.42111 6.54656 6.72872 6.77591 6.95604 7.60036 7.62424 7.72024 7.93583 8.28858 8.35218 8.98671 9.56256 11.06343 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.039348 B = 0.003331 C = 0.003142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.428763 B = 8403.542084 C = 8908.979379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.074 3.926 3 H 0.070 0.930 4 C -0.144 4.144 5 C -0.143 4.143 6 H 0.111 0.889 7 C 0.519 3.481 8 O -0.540 6.540 9 N -0.723 5.723 10 C 0.115 3.885 11 C -0.121 4.121 12 C 0.023 3.977 13 C -0.523 4.523 14 H 0.056 0.944 15 C 0.056 3.944 16 N -0.893 5.893 17 Si 0.893 3.107 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 C 0.095 3.905 22 H 0.084 0.916 23 C -0.143 4.143 24 O -0.371 6.371 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.069 0.931 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.398 0.602 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.019 0.981 36 H 0.019 0.981 37 H 0.261 0.739 38 H 0.077 0.923 39 H 0.064 0.936 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.875 4.983 15.340 21.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.016 3.984 3 H 0.088 0.912 4 C -0.182 4.182 5 C -0.165 4.165 6 H 0.129 0.871 7 C 0.304 3.696 8 O -0.418 6.418 9 N -0.373 5.373 10 C -0.007 4.007 11 C -0.159 4.159 12 C -0.014 4.014 13 C -0.561 4.561 14 H 0.074 0.926 15 C -0.145 4.145 16 N -0.532 5.532 17 Si 0.721 3.279 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.210 1.210 21 C 0.037 3.963 22 H 0.101 0.899 23 C -0.200 4.200 24 O -0.291 6.291 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.088 0.912 28 H 0.100 0.900 29 H 0.106 0.894 30 H 0.232 0.768 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.037 0.963 36 H 0.037 0.963 37 H 0.070 0.930 38 H 0.096 0.904 39 H 0.083 0.917 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -13.997 5.077 15.844 21.742 hybrid contribution -0.445 -0.338 -1.558 1.655 sum -14.442 4.739 14.286 20.860 Atomic orbital electron populations 1.21940 0.93551 1.02867 1.02426 1.22677 0.95172 0.95870 0.84694 0.91226 1.23044 0.99854 0.96795 0.98542 1.22962 0.95608 1.01249 0.96679 0.87123 1.20183 0.90286 0.76772 0.82391 1.90709 1.29858 1.50696 1.70508 1.46226 1.10861 1.70271 1.09988 1.21671 0.85432 1.01522 0.92105 1.21889 1.01909 1.00266 0.91802 1.19033 0.90979 0.97479 0.93929 1.21237 0.92789 1.47290 0.94775 0.92593 1.25036 0.95020 0.95476 0.98959 1.69976 0.99019 1.49624 1.34621 0.86524 0.78518 0.78109 0.84763 1.19752 1.20975 1.20981 1.22915 0.87745 0.94604 0.91028 0.89863 1.21761 1.02246 0.96783 0.99259 1.88892 1.39977 1.67304 1.32953 0.91822 0.91904 0.91176 0.89952 0.89378 0.76781 0.91726 0.91699 0.92720 0.92731 0.96276 0.96268 0.92951 0.90432 0.91731 0.92043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.36 37.16 0.35 -0.73 16 2 C 0.07 0.67 4.06 -26.15 -0.11 0.57 16 3 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 4 C -0.14 -1.26 6.17 -25.20 -0.16 -1.42 16 5 C -0.14 -1.52 2.95 -89.76 -0.26 -1.78 16 6 H 0.11 1.01 8.06 -51.93 -0.42 0.59 16 7 C 0.52 7.28 7.05 -10.98 -0.08 7.20 16 8 O -0.54 -9.65 15.69 5.55 0.09 -9.57 16 9 N -0.72 -9.86 5.50 -60.30 -0.33 -10.19 16 10 C 0.12 1.97 5.67 -4.04 -0.02 1.95 16 11 C -0.12 -2.30 5.27 -26.73 -0.14 -2.45 16 12 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 13 C -0.52 -14.46 9.11 -34.44 -0.31 -14.77 16 14 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 15 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 16 N -0.89 -26.65 13.29 55.43 0.74 -25.91 16 17 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 18 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 C 0.09 1.09 3.02 -25.67 -0.08 1.01 16 22 H 0.08 1.08 7.53 -51.93 -0.39 0.69 16 23 C -0.14 -1.49 9.66 37.16 0.36 -1.13 16 24 O -0.37 -4.26 10.89 -35.23 -0.38 -4.65 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.08 0.76 7.85 -51.93 -0.41 0.35 16 29 H 0.09 0.60 7.70 -51.93 -0.40 0.20 16 30 H 0.40 4.34 8.47 -40.82 -0.35 3.99 16 31 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 33 H 0.05 1.00 8.14 -51.92 -0.42 0.58 16 34 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 35 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 38 H 0.08 0.87 8.03 -51.93 -0.42 0.45 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 330.35 15.07 4.98 4.98 Total: -1.00 -31.82 330.35 -7.62 -39.44 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -6.99 Total: -0.79 kcal Atomic # 6 Polarization: -8.91 SS G_CDS: -0.69 Total: -9.59 kcal Atomic # 7 Polarization: -36.51 SS G_CDS: 0.40 Total: -36.11 kcal Atomic # 8 Polarization: -13.92 SS G_CDS: -0.30 Total: -14.21 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.82 -7.62 -39.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601037607.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.078 kcal (2) G-P(sol) polarization free energy of solvation -31.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds