Wall clock time and date at job start Mon Mar 30 2020 21:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30889 * 1 3 3 Si 1.86800 * 119.99930 * 2 1 4 4 H 1.48506 * 109.47149 * 0.02562 * 3 2 1 5 5 H 1.48495 * 109.47322 * 119.99710 * 3 2 1 6 6 H 1.48500 * 109.47449 * 240.00178 * 3 2 1 7 7 C 1.39916 * 120.00301 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99880 * 154.64325 * 7 2 1 9 9 C 1.41020 * 119.99498 * 334.63675 * 7 2 1 10 10 C 1.40742 * 120.29687 * 334.27417 * 9 7 2 11 11 C 1.36419 * 119.95971 * 179.71197 * 10 9 7 12 12 C 1.39027 * 120.57908 * 0.56930 * 11 10 9 13 13 Br 1.89096 * 119.69739 * 179.73146 * 12 11 10 14 14 C 1.38287 * 120.60402 * 359.71068 * 12 11 10 15 15 C 1.38696 * 120.01393 * 359.97438 * 14 12 11 16 16 N 1.38742 * 120.28300 * 179.97438 * 15 14 12 17 17 N 1.36599 * 120.00519 * 0.02691 * 16 15 14 18 18 H 0.97004 * 119.99998 * 174.17956 * 1 2 3 19 19 H 1.08001 * 120.02185 * 359.97438 * 10 9 7 20 20 H 1.08001 * 119.71328 * 180.25905 * 11 10 9 21 21 H 1.07992 * 119.99404 * 180.02562 * 14 12 11 22 22 H 0.97002 * 120.00143 * 180.02562 * 16 15 14 23 23 H 1.00894 * 111.00251 * 179.97438 * 17 16 15 24 24 H 1.00896 * 110.99948 * 303.95617 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 1.2778 2.7465 0.0006 5 1 3.0966 1.6965 1.2125 6 1 3.0966 1.6965 -1.2125 7 6 2.0085 -1.2117 -0.0005 8 1 3.0105 -1.2565 -0.4011 9 6 1.4053 -2.3743 0.5221 10 6 0.3949 -2.2732 1.4966 11 6 -0.1880 -3.4022 1.9932 12 6 0.2149 -4.6581 1.5539 13 35 -0.6049 -6.2068 2.2647 14 6 1.2095 -4.7852 0.6015 15 6 1.8146 -3.6536 0.0750 16 7 2.8133 -3.7746 -0.8804 17 7 3.2044 -5.0120 -1.3069 18 1 -0.4850 -0.8357 -0.0852 19 1 0.0783 -1.3023 1.8480 20 1 -0.9659 -3.3198 2.7379 21 1 1.5146 -5.7656 0.2669 22 1 3.2340 -2.9805 -1.2456 23 1 3.9349 -4.9417 -1.9993 24 1 3.4957 -5.5867 -0.5305 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307040407.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:18:06 Heat of formation + Delta-G solvation = 21.177976 kcal Electronic energy + Delta-G solvation = -11658.928894 eV Core-core repulsion = 9424.725985 eV Total energy + Delta-G solvation = -2234.202909 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 255.991 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.13960 -37.22487 -35.82263 -32.56946 -31.41829 -30.22859 -27.96097 -26.44023 -22.81864 -22.26057 -19.90856 -18.51567 -17.70930 -16.46214 -16.02901 -15.68666 -15.23837 -14.54332 -14.39008 -13.89713 -13.68653 -12.85320 -12.58301 -12.41243 -11.97430 -11.88306 -11.36777 -11.29571 -10.95804 -10.76471 -9.94260 -9.40090 -9.18315 -8.04823 -6.22794 0.71825 1.05648 1.14287 1.53949 1.63435 1.81051 2.35429 2.49077 2.67886 3.50883 4.30204 4.34785 4.54192 4.97145 4.98076 5.33456 5.40358 5.56207 5.75285 5.85308 5.89046 6.12832 6.27075 6.56747 6.89298 7.10964 7.63965 8.08360 Molecular weight = 255.99amu Principal moments of inertia in cm(-1) A = 0.032695 B = 0.007444 C = 0.006203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.198997 B = 3760.311344 C = 4512.991484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.005 3.995 3 Si 1.115 2.885 4 H -0.277 1.277 5 H -0.266 1.266 6 H -0.256 1.256 7 C -0.540 4.540 8 H 0.080 0.920 9 C 0.043 3.957 10 C -0.215 4.215 11 C -0.098 4.098 12 C -0.174 4.174 13 Br -0.081 7.081 14 C -0.136 4.136 15 C 0.118 3.882 16 N -0.599 5.599 17 N -0.604 5.604 18 H 0.285 0.715 19 H 0.096 0.904 20 H 0.109 0.891 21 H 0.121 0.879 22 H 0.402 0.598 23 H 0.363 0.637 24 H 0.328 0.672 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.861 -6.436 0.990 7.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.212 4.212 3 Si 0.933 3.067 4 H -0.202 1.202 5 H -0.191 1.191 6 H -0.181 1.181 7 C -0.569 4.569 8 H 0.098 0.902 9 C 0.037 3.963 10 C -0.237 4.237 11 C -0.120 4.120 12 C -0.254 4.254 13 Br 0.003 6.997 14 C -0.162 4.162 15 C 0.016 3.984 16 N -0.326 5.326 17 N -0.230 5.230 18 H 0.097 0.903 19 H 0.114 0.886 20 H 0.127 0.873 21 H 0.139 0.861 22 H 0.241 0.759 23 H 0.178 0.822 24 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 2.603 -5.630 0.988 6.281 hybrid contribution 1.240 -0.961 0.050 1.570 sum 3.844 -6.591 1.038 7.700 Atomic orbital electron populations 1.70579 1.09049 1.33377 1.31021 1.28290 0.95614 1.07240 0.90061 0.83011 0.74714 0.70043 0.78962 1.20208 1.19101 1.18053 1.20422 1.03019 0.94813 1.38645 0.90232 1.17641 0.94123 0.91691 0.92835 1.20525 1.04425 0.96863 1.01894 1.20272 1.00074 0.91209 1.00450 1.20793 1.06074 0.90165 1.08366 1.96343 1.81430 1.36427 1.85530 1.20023 0.99249 0.96930 1.00036 1.17640 0.94450 0.93001 0.93352 1.42625 1.40684 1.02097 1.47236 1.60057 1.46089 1.01438 1.15382 0.90306 0.88560 0.87324 0.86088 0.75919 0.82226 0.85703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.86 12.32 21.83 0.27 -42.59 14 2 C 0.00 0.22 4.93 85.24 0.42 0.64 14 3 Si 1.11 40.92 30.00 68.60 2.06 42.98 14 4 H -0.28 -10.28 7.11 99.48 0.71 -9.57 14 5 H -0.27 -9.32 7.11 99.48 0.71 -8.61 14 6 H -0.26 -8.48 7.11 99.48 0.71 -7.77 14 7 C -0.54 -26.71 8.43 23.36 0.20 -26.51 14 8 H 0.08 3.66 6.75 -2.91 -0.02 3.64 14 9 C 0.04 2.19 5.31 -21.16 -0.11 2.07 14 10 C -0.22 -10.89 7.89 22.46 0.18 -10.71 14 11 C -0.10 -4.56 9.70 22.03 0.21 -4.34 14 12 C -0.17 -7.59 6.24 22.47 0.14 -7.45 14 13 Br -0.08 -2.91 33.68 -20.37 -0.69 -3.59 14 14 C -0.14 -5.96 9.07 22.39 0.20 -5.76 14 15 C 0.12 5.41 6.73 38.98 0.26 5.67 14 16 N -0.60 -22.96 6.55 -50.41 -0.33 -23.29 14 17 N -0.60 -18.16 9.59 37.02 0.36 -17.80 14 18 H 0.28 15.68 6.69 -92.71 -0.62 15.06 14 19 H 0.10 5.10 6.50 -2.91 -0.02 5.08 14 20 H 0.11 4.63 8.06 -2.91 -0.02 4.60 14 21 H 0.12 4.86 7.03 -2.91 -0.02 4.84 14 22 H 0.40 14.94 7.06 -215.49 -1.52 13.42 14 23 H 0.36 8.19 9.21 -210.56 -1.94 6.25 14 24 H 0.33 9.17 8.43 -210.56 -1.77 7.40 14 Total: -1.00 -55.69 231.50 -0.65 -56.34 By element: Atomic # 1 Polarization: 38.16 SS G_CDS: -3.82 Total: 34.35 kcal Atomic # 6 Polarization: -47.89 SS G_CDS: 1.50 Total: -46.39 kcal Atomic # 7 Polarization: -83.98 SS G_CDS: 0.29 Total: -83.69 kcal Atomic # 14 Polarization: 40.92 SS G_CDS: 2.06 Total: 42.98 kcal Atomic # 35 Polarization: -2.91 SS G_CDS: -0.69 Total: -3.59 kcal Total: -55.69 -0.65 -56.34 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307040407.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.518 kcal (2) G-P(sol) polarization free energy of solvation -55.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds