Wall clock time and date at job start Mon Mar 30 2020 21:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30300 * 126.34227 * 2 1 4 4 N 1.28525 * 110.07877 * 180.02562 * 3 2 1 5 5 C 1.31280 * 109.85761 * 359.97438 * 4 3 2 6 6 S 1.76195 * 126.48497 * 180.02562 * 5 4 3 7 7 N 1.36545 * 107.03099 * 0.27153 * 5 4 3 8 8 C 1.46501 * 127.14058 * 179.73555 * 7 5 4 9 9 C 1.53002 * 109.46709 * 90.02236 * 8 7 5 10 10 N 1.46907 * 109.46642 * 180.02562 * 9 8 7 11 11 C 1.46898 * 110.99698 * 180.02562 * 10 9 8 12 12 H 1.09001 * 109.47086 * 324.99378 * 11 10 9 13 13 C 1.52995 * 109.47323 * 84.99876 * 11 10 9 14 14 C 1.50704 * 109.46793 * 204.99950 * 11 10 9 15 15 H 1.07990 * 120.00021 * 359.97438 * 14 11 10 16 16 C 1.37885 * 119.99608 * 180.02562 * 14 11 10 17 17 N 1.31515 * 120.00298 * 359.97438 * 16 14 11 18 18 Si 1.86799 * 119.99543 * 180.02562 * 16 14 11 19 19 H 1.48498 * 109.47460 * 89.99600 * 18 16 14 20 20 H 1.48506 * 109.46877 * 209.99648 * 18 16 14 21 21 H 1.48498 * 109.47218 * 329.99335 * 18 16 14 22 22 H 1.09001 * 109.46813 * 89.97688 * 1 2 3 23 23 H 1.09000 * 109.46964 * 209.97822 * 1 2 3 24 24 H 1.08996 * 109.46910 * 329.98152 * 1 2 3 25 25 H 1.41005 * 99.99931 * 90.02857 * 6 5 4 26 26 H 1.08988 * 109.46993 * 210.02121 * 8 7 5 27 27 H 1.08999 * 109.47138 * 330.02385 * 8 7 5 28 28 H 1.09000 * 109.47556 * 299.99365 * 9 8 7 29 29 H 1.08999 * 109.47199 * 60.00186 * 9 8 7 30 30 H 1.00901 * 111.00072 * 303.95183 * 10 9 8 31 31 H 1.08995 * 109.47338 * 299.99546 * 13 11 10 32 32 H 1.09001 * 109.47446 * 59.99723 * 13 11 10 33 33 H 1.09006 * 109.47040 * 179.97438 * 13 11 10 34 34 H 0.96999 * 119.99872 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2792 1.0496 0.0000 4 7 3.5130 0.6896 -0.0005 5 6 3.5953 -0.6206 -0.0004 6 16 5.0748 -1.5774 -0.0003 7 7 2.3174 -1.1016 -0.0059 8 6 1.9010 -2.5061 -0.0132 9 6 1.7517 -3.0013 1.4268 10 7 1.3347 -4.4099 1.4194 11 6 1.1804 -4.9203 2.7882 12 1 1.9295 -4.4617 3.4336 13 6 -0.2179 -4.5773 3.3059 14 6 1.3638 -6.4162 2.7901 15 1 1.5735 -6.9356 1.8668 16 6 1.2627 -7.1216 3.9705 17 7 1.0068 -6.4890 5.0948 18 14 1.4908 -8.9756 3.9729 19 1 2.9237 -9.2979 4.1920 20 1 0.6769 -9.5730 5.0620 21 1 1.0528 -9.5299 2.6667 22 1 -0.3633 0.0004 -1.0277 23 1 -0.3633 -0.8902 0.5135 24 1 -0.3633 0.8898 0.5141 25 1 5.2801 -1.7108 1.3884 26 1 0.9460 -2.5992 -0.5302 27 1 2.6525 -3.1053 -0.5274 28 1 2.7067 -2.9083 1.9439 29 1 1.0002 -2.4022 1.9409 30 1 0.4845 -4.5326 0.8901 31 1 -0.3505 -3.4954 3.3045 32 1 -0.9670 -5.0360 2.6604 33 1 -0.3325 -4.9565 4.3214 34 1 0.9361 -6.9853 5.9252 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380150921.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:18:13 Heat of formation + Delta-G solvation = 77.508785 kcal Electronic energy + Delta-G solvation = -16806.663804 eV Core-core repulsion = 14095.333915 eV Total energy + Delta-G solvation = -2711.329889 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 256.105 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -43.02952 -36.98157 -35.03793 -32.69696 -32.44088 -29.93526 -27.96851 -26.84377 -25.28101 -23.27271 -22.39408 -20.94839 -20.40922 -18.23281 -16.82770 -16.56160 -16.17288 -15.29403 -14.95002 -14.75799 -14.22879 -13.83237 -13.48098 -13.25742 -12.84347 -12.51972 -12.37630 -11.91809 -11.78022 -11.55303 -11.35567 -11.04362 -10.90252 -10.74041 -10.56911 -10.30520 -10.30112 -9.94537 -9.23897 -9.18536 -8.49272 -8.46399 -7.58206 -6.11673 -4.16055 0.91015 1.32388 2.21812 2.49225 2.79034 3.25109 3.31893 3.35190 4.15213 4.33445 4.47709 4.70056 4.84886 5.15298 5.20334 5.20768 5.25266 5.34578 5.50643 5.58926 5.74092 5.95359 6.00710 6.48378 6.58182 6.63435 6.87323 7.09868 7.54803 7.70194 8.06008 8.24829 8.38090 8.47723 8.90763 9.50047 10.95463 Molecular weight = 256.11amu Principal moments of inertia in cm(-1) A = 0.028787 B = 0.004748 C = 0.004294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.420635 B = 5896.109545 C = 6518.511946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.197 3.803 3 N -0.297 5.297 4 N -0.245 5.245 5 C 0.145 3.855 6 S -0.013 6.013 7 N -0.450 5.450 8 C 0.098 3.902 9 C 0.050 3.950 10 N -0.676 5.676 11 C 0.214 3.786 12 H 0.032 0.968 13 C -0.170 4.170 14 C -0.499 4.499 15 H 0.065 0.935 16 C 0.056 3.944 17 N -0.897 5.897 18 Si 0.900 3.100 19 H -0.281 1.281 20 H -0.288 1.288 21 H -0.273 1.273 22 H 0.089 0.911 23 H 0.082 0.918 24 H 0.097 0.903 25 H 0.111 0.889 26 H 0.098 0.902 27 H 0.117 0.883 28 H 0.067 0.933 29 H 0.026 0.974 30 H 0.328 0.672 31 H 0.003 0.997 32 H 0.030 0.970 33 H 0.091 0.909 34 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.065 8.549 -9.550 12.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.072 4.072 3 N -0.141 5.141 4 N -0.090 5.090 5 C -0.230 4.230 6 S 0.137 5.863 7 N -0.143 5.143 8 C -0.024 4.024 9 C -0.081 4.081 10 N -0.306 5.306 11 C 0.106 3.894 12 H 0.050 0.950 13 C -0.229 4.229 14 C -0.537 4.537 15 H 0.083 0.917 16 C -0.145 4.145 17 N -0.537 5.537 18 Si 0.728 3.272 19 H -0.207 1.207 20 H -0.214 1.214 21 H -0.198 1.198 22 H 0.108 0.892 23 H 0.101 0.899 24 H 0.116 0.884 25 H 0.075 0.925 26 H 0.116 0.884 27 H 0.135 0.865 28 H 0.085 0.915 29 H 0.044 0.956 30 H 0.145 0.855 31 H 0.022 0.978 32 H 0.049 0.951 33 H 0.110 0.890 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.728 9.174 -9.661 13.435 hybrid contribution -1.856 -1.408 1.451 2.745 sum -0.128 7.766 -8.210 11.302 Atomic orbital electron populations 1.20318 0.83377 1.05049 1.04281 1.25235 0.97179 0.82626 1.02116 1.74095 0.96508 1.24073 1.19423 1.74733 1.12021 1.07540 1.14698 1.25886 0.89572 0.94621 1.12883 1.86956 1.21064 1.64955 1.13329 1.47174 1.05818 1.09250 1.52055 1.22220 1.03390 0.76161 1.00657 1.22142 1.00923 0.92307 0.92704 1.60821 1.38369 1.12394 1.19048 1.19195 0.92538 0.95479 0.82160 0.94975 1.22442 0.99631 0.95557 1.05279 1.21101 1.47458 0.91069 0.94120 0.91707 1.24963 0.95254 0.98791 0.95479 1.69874 1.49517 1.35655 0.98608 0.86464 0.78093 0.84982 0.77662 1.20680 1.21350 1.19813 0.89228 0.89894 0.88402 0.92520 0.88367 0.86456 0.91463 0.95554 0.85504 0.97756 0.95052 0.89030 0.92906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.63 10.09 36.01 0.36 -0.26 16 2 C 0.20 2.62 8.07 -153.99 -1.24 1.38 16 3 N -0.30 -4.79 12.17 33.00 0.40 -4.39 16 4 N -0.25 -4.12 12.23 30.68 0.38 -3.75 16 5 C 0.15 2.15 8.37 -88.34 -0.74 1.41 16 6 S -0.01 -0.16 25.78 -107.50 -2.77 -2.93 16 7 N -0.45 -6.05 2.81 -113.54 -0.32 -6.37 16 8 C 0.10 1.19 6.02 -4.04 -0.02 1.17 16 9 C 0.05 0.78 5.81 -3.82 -0.02 0.75 16 10 N -0.68 -12.44 6.23 -107.95 -0.67 -13.12 16 11 C 0.21 4.97 2.57 -68.87 -0.18 4.79 16 12 H 0.03 0.84 7.80 -51.93 -0.40 0.44 16 13 C -0.17 -3.79 8.94 37.16 0.33 -3.46 16 14 C -0.50 -13.01 8.84 -34.44 -0.30 -13.31 16 15 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 16 C 0.06 1.49 5.30 -17.82 -0.09 1.40 16 17 N -0.90 -24.75 11.32 55.43 0.63 -24.13 16 18 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16 19 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 20 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 22 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 23 H 0.08 0.68 7.95 -51.93 -0.41 0.26 16 24 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.11 1.28 9.55 96.90 0.93 2.21 16 26 H 0.10 0.96 7.91 -51.94 -0.41 0.55 16 27 H 0.12 1.40 7.86 -51.93 -0.41 0.99 16 28 H 0.07 1.15 8.06 -51.93 -0.42 0.73 16 29 H 0.03 0.42 7.44 -51.93 -0.39 0.03 16 30 H 0.33 5.48 8.47 -39.29 -0.33 5.15 16 31 H 0.00 0.07 7.45 -51.93 -0.39 -0.32 16 32 H 0.03 0.66 8.13 -51.93 -0.42 0.24 16 33 H 0.09 2.32 6.07 -51.93 -0.32 2.01 16 34 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 304.51 15.07 4.59 4.59 Total: -1.00 -29.84 304.51 -8.06 -37.90 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -3.36 Total: 2.69 kcal Atomic # 6 Polarization: -4.22 SS G_CDS: -1.91 Total: -6.13 kcal Atomic # 7 Polarization: -52.16 SS G_CDS: 0.41 Total: -51.75 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Atomic # 16 Polarization: -0.16 SS G_CDS: -2.77 Total: -2.93 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -29.84 -8.06 -37.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380150921.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.408 kcal (2) G-P(sol) polarization free energy of solvation -29.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds