Wall clock time and date at job start Mon Mar 30 2020 21:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08991 * 109.46998 * 2 1 4 4 C 1.52994 * 109.46981 * 120.00142 * 2 1 3 5 5 C 1.50708 * 109.47057 * 200.56579 * 4 2 1 6 6 H 1.07998 * 119.99908 * 5.80892 * 5 4 2 7 7 C 1.37876 * 119.99960 * 185.80833 * 5 4 2 8 8 N 1.31515 * 119.99861 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 120.00288 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.47232 * 89.99872 * 9 7 5 11 11 H 1.48501 * 109.47194 * 210.00210 * 9 7 5 12 12 H 1.48507 * 109.46705 * 329.99934 * 9 7 5 13 13 N 1.46901 * 109.46812 * 239.99816 * 2 1 3 14 14 C 1.46901 * 110.99749 * 198.87883 * 13 2 1 15 15 C 1.50252 * 109.98176 * 286.93745 * 14 13 2 16 16 O 1.21279 * 118.62661 * 162.80088 * 15 14 13 17 17 N 1.33718 * 122.75188 * 342.79643 * 15 14 13 18 18 C 1.46013 * 122.92653 * 1.68956 * 17 15 14 19 19 C 1.47189 * 110.99956 * 75.99245 * 13 2 1 20 20 H 1.09002 * 109.59568 * 174.13554 * 19 13 2 21 21 C 1.50700 * 109.59503 * 294.59562 * 19 13 2 22 22 O 1.20831 * 119.99433 * 332.43507 * 21 19 13 23 23 O 1.34227 * 120.00420 * 152.44041 * 21 19 13 24 24 H 1.09002 * 109.47239 * 172.38543 * 1 2 3 25 25 H 1.08998 * 109.46943 * 52.38525 * 1 2 3 26 26 H 1.08999 * 109.47061 * 292.38688 * 1 2 3 27 27 H 1.08999 * 109.47296 * 320.56331 * 4 2 1 28 28 H 1.09006 * 109.47537 * 80.56723 * 4 2 1 29 29 H 0.96997 * 120.00018 * 179.97438 * 8 7 5 30 30 H 1.09006 * 109.38516 * 47.09528 * 14 13 2 31 31 H 1.09003 * 109.38617 * 166.77976 * 14 13 2 32 32 H 0.97001 * 118.53568 * 181.67237 * 17 15 14 33 33 H 1.09000 * 109.37199 * 221.66595 * 18 17 15 34 34 H 1.08989 * 109.37345 * 102.01109 * 18 17 15 35 35 H 0.96696 * 116.99867 * 179.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.4617 -0.3041 1.5249 6 1 3.9211 0.4729 0.9320 7 6 4.1758 -0.9144 2.5341 8 7 5.4166 -0.5507 2.7744 9 14 3.3814 -2.2589 3.5593 10 1 3.6299 -3.5779 2.9239 11 1 3.9643 -2.2496 4.9251 12 1 1.9185 -2.0178 3.6437 13 7 2.0196 -0.6925 -1.1994 14 6 3.4186 -1.1088 -1.0328 15 6 4.3231 0.0885 -1.1098 16 8 5.4553 -0.0105 -0.6866 17 7 3.9321 1.2586 -1.6255 18 6 2.5813 1.4927 -2.1282 19 6 1.8818 0.1580 -2.3928 20 1 2.3450 -0.3342 -3.2480 21 6 0.4214 0.4002 -2.6749 22 8 -0.4032 -0.4136 -2.3316 23 8 0.0367 1.5197 -3.3077 24 1 -0.3634 -1.0186 -0.1362 25 1 -0.3633 0.6272 -0.8140 26 1 -0.3633 0.3914 0.9502 27 1 1.4128 -0.4595 2.1014 28 1 2.0023 -1.7986 1.0876 29 1 5.9189 -0.9798 3.4846 30 1 3.5393 -1.5917 -0.0630 31 1 3.6829 -1.8132 -1.8215 32 1 4.5743 1.9844 -1.6673 33 1 2.6344 2.0631 -3.0555 34 1 2.0136 2.0583 -1.3896 35 1 -0.9107 1.6305 -3.4667 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695710021.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:21:08 Heat of formation + Delta-G solvation = -80.203946 kcal Electronic energy + Delta-G solvation = -20960.939012 eV Core-core repulsion = 17767.724563 eV Total energy + Delta-G solvation = -3193.214449 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 256.126 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.16176 -39.50977 -36.99441 -36.03806 -34.69601 -32.57002 -31.34213 -30.17334 -27.94325 -25.03338 -24.50736 -22.74371 -21.36277 -20.67582 -18.41849 -17.76709 -17.19470 -16.92003 -16.14532 -15.82001 -15.69719 -15.20911 -14.55458 -14.18046 -13.92098 -13.28936 -12.91659 -12.74252 -12.56020 -12.35962 -12.09956 -11.93713 -11.66380 -11.24368 -11.06012 -10.66820 -10.61321 -10.38084 -10.13822 -9.85752 -9.52800 -9.35640 -9.09499 -8.56084 -8.48357 -7.79212 -5.97192 -3.97840 2.22242 2.88358 3.32663 3.41033 3.43835 3.51158 3.63155 4.27022 4.47137 4.69877 4.90696 5.25597 5.29512 5.33793 5.47052 5.63260 5.71511 5.89838 5.98805 6.12531 6.28354 6.45385 6.53242 6.72727 6.80952 6.96067 7.18716 7.26487 7.38547 7.57221 7.75808 7.89306 7.94414 8.50334 8.96822 9.07144 9.59521 11.13043 Molecular weight = 256.13amu Principal moments of inertia in cm(-1) A = 0.026076 B = 0.009055 C = 0.007319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.533441 B = 3091.445982 C = 3824.984803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.075 3.925 3 H 0.051 0.949 4 C -0.014 4.014 5 C -0.541 4.541 6 H 0.083 0.917 7 C 0.078 3.922 8 N -0.876 5.876 9 Si 0.870 3.130 10 H -0.276 1.276 11 H -0.289 1.289 12 H -0.267 1.267 13 N -0.500 5.500 14 C 0.035 3.965 15 C 0.507 3.493 16 O -0.517 6.517 17 N -0.737 5.737 18 C 0.090 3.910 19 C 0.077 3.923 20 H 0.125 0.875 21 C 0.485 3.515 22 O -0.476 6.476 23 O -0.521 6.521 24 H 0.068 0.932 25 H 0.044 0.956 26 H 0.046 0.954 27 H 0.023 0.977 28 H 0.026 0.974 29 H 0.261 0.739 30 H 0.166 0.834 31 H 0.089 0.911 32 H 0.395 0.605 33 H 0.084 0.916 34 H 0.070 0.930 35 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.594 3.767 -12.446 16.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.032 4.032 3 H 0.068 0.932 4 C -0.051 4.051 5 C -0.579 4.579 6 H 0.101 0.899 7 C -0.126 4.126 8 N -0.513 5.513 9 Si 0.697 3.303 10 H -0.201 1.201 11 H -0.215 1.215 12 H -0.191 1.191 13 N -0.226 5.226 14 C -0.094 4.094 15 C 0.294 3.706 16 O -0.389 6.389 17 N -0.393 5.393 18 C -0.037 4.037 19 C -0.033 4.033 20 H 0.143 0.857 21 C 0.325 3.675 22 O -0.360 6.360 23 O -0.333 6.333 24 H 0.087 0.913 25 H 0.063 0.937 26 H 0.065 0.935 27 H 0.042 0.958 28 H 0.044 0.956 29 H 0.071 0.929 30 H 0.183 0.817 31 H 0.107 0.893 32 H 0.231 0.769 33 H 0.102 0.898 34 H 0.088 0.912 35 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -9.066 2.745 -11.951 15.250 hybrid contribution -0.357 0.513 0.619 0.879 sum -9.422 3.258 -11.332 15.094 Atomic orbital electron populations 1.22311 0.95158 1.02771 0.99864 1.21989 0.94118 0.96967 0.90152 0.93161 1.19818 0.97430 0.96124 0.91730 1.21312 0.95354 1.22735 1.18479 0.89883 1.24962 0.94495 0.96580 0.96550 1.69960 1.09006 1.41675 1.30629 0.86949 0.80229 0.83055 0.80048 1.20144 1.21539 1.19121 1.62565 1.19981 1.38429 1.01655 1.23012 0.82965 0.94941 1.08527 1.20883 0.89381 0.84930 0.75427 1.90816 1.20878 1.83205 1.44051 1.45598 1.12842 1.15337 1.65552 1.21761 0.84505 0.97127 1.00280 1.21596 0.88655 0.94644 0.98450 0.85725 1.22787 0.91771 0.78669 0.74274 1.90770 1.53811 1.45303 1.46148 1.84534 1.33572 1.42928 1.72245 0.91271 0.93726 0.93467 0.95843 0.95589 0.92875 0.81740 0.89341 0.76944 0.89820 0.91227 0.73331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 7.58 37.16 0.28 -2.20 16 2 C 0.07 1.44 1.83 -67.71 -0.12 1.32 16 3 H 0.05 1.01 5.20 -51.93 -0.27 0.74 16 4 C -0.01 -0.31 3.14 -27.88 -0.09 -0.40 16 5 C -0.54 -14.56 6.24 -34.44 -0.22 -14.77 16 6 H 0.08 2.40 4.91 -52.49 -0.26 2.15 16 7 C 0.08 2.23 5.47 -17.82 -0.10 2.13 16 8 N -0.88 -26.93 13.96 55.43 0.77 -26.16 16 9 Si 0.87 21.44 27.36 -169.99 -4.65 16.79 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 12 H -0.27 -6.36 6.71 56.52 0.38 -5.98 16 13 N -0.50 -8.78 4.49 -221.57 -0.99 -9.78 16 14 C 0.03 0.68 5.31 -5.19 -0.03 0.65 16 15 C 0.51 10.57 4.74 -11.67 -0.06 10.52 16 16 O -0.52 -13.41 17.12 5.56 0.10 -13.32 16 17 N -0.74 -12.18 5.43 -61.06 -0.33 -12.52 16 18 C 0.09 1.18 5.27 -4.31 -0.02 1.16 16 19 C 0.08 1.06 2.77 -68.71 -0.19 0.87 16 20 H 0.13 1.48 8.08 -51.93 -0.42 1.06 16 21 C 0.49 6.16 5.67 36.01 0.20 6.37 16 22 O -0.48 -7.36 13.75 -18.75 -0.26 -7.62 16 23 O -0.52 -4.68 12.78 -39.25 -0.50 -5.18 16 24 H 0.07 1.26 7.59 -51.93 -0.39 0.87 16 25 H 0.04 0.69 4.59 -51.93 -0.24 0.45 16 26 H 0.05 0.79 7.97 -51.93 -0.41 0.37 16 27 H 0.02 0.55 7.31 -51.93 -0.38 0.17 16 28 H 0.03 0.60 6.57 -51.93 -0.34 0.26 16 29 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 30 H 0.17 3.84 4.42 -51.93 -0.23 3.61 16 31 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 32 H 0.40 6.12 8.84 -40.82 -0.36 5.76 16 33 H 0.08 0.84 8.13 -51.93 -0.42 0.42 16 34 H 0.07 0.97 6.49 -51.94 -0.34 0.63 16 35 H 0.41 1.96 9.10 45.56 0.41 2.38 16 LS Contribution 269.48 15.07 4.06 4.06 Total: -1.00 -34.54 269.48 -5.37 -39.91 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -3.23 Total: 8.16 kcal Atomic # 6 Polarization: 5.98 SS G_CDS: -0.33 Total: 5.64 kcal Atomic # 7 Polarization: -47.90 SS G_CDS: -0.55 Total: -48.45 kcal Atomic # 8 Polarization: -25.45 SS G_CDS: -0.66 Total: -26.11 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.65 Total: 16.79 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -34.54 -5.37 -39.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695710021.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.294 kcal (2) G-P(sol) polarization free energy of solvation -34.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds