Wall clock time and date at job start Mon Mar 30 2020 21:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 108.48054 * 2 1 4 4 C 1.47684 * 108.64880 * 242.05367 * 2 1 3 5 5 C 1.55428 * 109.69992 * 178.03995 * 4 2 1 6 6 N 1.44460 * 109.02269 * 69.93634 * 5 4 2 7 7 C 1.34783 * 118.51432 * 91.18262 * 6 5 4 8 8 O 1.21429 * 119.99996 * 180.92337 * 7 6 5 9 9 C 1.48832 * 119.99577 * 0.92150 * 7 6 5 10 10 O 1.21505 * 120.00331 * 353.72084 * 9 7 6 11 11 N 1.34771 * 119.99781 * 173.70978 * 9 7 6 12 12 C 1.36123 * 120.00277 * 180.02562 * 11 9 7 13 13 H 1.07999 * 119.99548 * 0.02562 * 12 11 9 14 14 C 1.39587 * 120.00172 * 180.02562 * 12 11 9 15 15 N 1.31020 * 119.99792 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00115 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.47611 * 179.97438 * 16 14 12 18 18 H 1.48502 * 109.46940 * 59.99830 * 16 14 12 19 19 H 1.48502 * 109.47167 * 300.00415 * 16 14 12 20 20 C 1.48176 * 122.97543 * 270.91025 * 6 5 4 21 21 C 1.54293 * 110.69709 * 41.49558 * 20 6 5 22 22 O 1.40531 * 109.86293 * 39.38790 * 21 20 6 23 23 H 1.08996 * 109.47362 * 302.05916 * 1 2 3 24 24 H 1.09004 * 109.47221 * 62.06487 * 1 2 3 25 25 H 1.09010 * 109.46970 * 182.06244 * 1 2 3 26 26 H 1.08995 * 109.43678 * 298.17872 * 4 2 1 27 27 H 1.09001 * 109.43527 * 58.09778 * 4 2 1 28 28 H 1.09000 * 109.55336 * 310.13222 * 5 4 2 29 29 H 1.08998 * 109.74445 * 189.85493 * 5 4 2 30 30 H 0.97001 * 120.00303 * 0.02562 * 11 9 7 31 31 H 0.96995 * 119.99817 * 359.97438 * 15 14 12 32 32 H 1.08997 * 109.23747 * 161.82041 * 20 6 5 33 33 H 1.09011 * 109.22913 * 281.22615 * 20 6 5 34 34 H 1.09001 * 109.40467 * 159.51012 * 21 20 6 35 35 H 1.09001 * 109.40932 * 279.26783 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8755 1.0338 0.0000 4 6 2.0022 -0.6558 -1.2361 5 6 3.5554 -0.6251 -1.2850 6 7 4.0760 -1.5174 -0.2753 7 6 4.3237 -2.7982 -0.6144 8 8 4.7457 -3.5758 0.2173 9 6 4.0798 -3.2593 -2.0083 10 8 3.5515 -2.5154 -2.8107 11 7 4.4451 -4.5020 -2.3806 12 6 4.2226 -4.9237 -3.6556 13 1 3.7536 -4.2622 -4.3689 14 6 4.6005 -6.2110 -4.0410 15 7 5.1690 -7.0136 -3.1753 16 14 4.2945 -6.7899 -5.7904 17 1 4.7841 -8.1834 -5.9436 18 1 5.0178 -5.9047 -6.7383 19 1 2.8389 -6.7414 -6.0804 20 6 4.3556 -1.0871 1.1147 21 6 3.2345 -0.1640 1.6358 22 8 1.9857 -0.6329 1.1934 23 1 -0.3634 0.5454 0.8709 24 1 -0.3634 0.4814 -0.9079 25 1 -0.3633 -1.0271 0.0370 26 1 1.6583 -1.6899 -1.2522 27 1 1.6035 -0.1274 -2.1021 28 1 3.9065 0.3884 -1.0908 29 1 3.8993 -0.9475 -2.2678 30 1 4.8667 -5.0960 -1.7400 31 1 5.3276 -6.7131 -2.2669 32 1 4.4242 -1.9659 1.7558 33 1 5.3035 -0.5494 1.1403 34 1 3.2518 -0.1528 2.7256 35 1 3.3948 0.8472 1.2618 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000720438588.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:21:10 Heat of formation + Delta-G solvation = -97.981345 kcal Electronic energy + Delta-G solvation = -19990.569458 eV Core-core repulsion = 16796.584123 eV Total energy + Delta-G solvation = -3193.985335 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 256.126 amu Computer time = 5.15 seconds Orbital eigenvalues (eV) -40.34073 -38.79434 -37.27556 -35.48788 -34.20173 -33.77618 -31.25257 -29.32764 -28.48976 -25.64550 -24.04209 -23.55756 -21.23609 -21.21832 -19.19307 -18.11550 -17.30645 -16.78006 -16.19317 -15.51524 -15.22172 -14.82533 -14.57410 -14.18275 -13.83519 -13.58960 -13.36140 -13.05941 -12.74722 -12.58336 -12.16677 -11.76944 -11.54168 -11.43133 -11.34958 -11.09671 -10.79139 -10.53944 -10.30021 -10.19590 -10.06438 -9.78529 -9.44702 -8.38119 -8.29574 -7.91179 -7.04281 -4.07979 2.36739 3.16272 3.27012 3.28597 3.46267 3.79058 4.12718 4.19294 4.69290 4.81375 4.93072 5.03449 5.11791 5.18303 5.31368 5.38066 5.46495 5.53244 5.65271 5.71989 5.80783 5.91981 5.96401 5.99725 6.17074 6.45478 6.61803 6.96949 7.37068 7.47395 7.65912 7.85103 8.21337 8.44381 8.68065 9.21018 9.65139 10.37438 Molecular weight = 256.13amu Principal moments of inertia in cm(-1) A = 0.033022 B = 0.005646 C = 0.005128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.722500 B = 4958.442705 C = 5459.383105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.086 3.914 3 H 0.051 0.949 4 C -0.151 4.151 5 C 0.084 3.916 6 N -0.583 5.583 7 C 0.510 3.490 8 O -0.552 6.552 9 C 0.395 3.605 10 O -0.578 6.578 11 N -0.509 5.509 12 C -0.384 4.384 13 H 0.110 0.890 14 C 0.000 4.000 15 N -0.866 5.866 16 Si 1.096 2.904 17 H -0.276 1.276 18 H -0.279 1.279 19 H -0.279 1.279 20 C 0.079 3.921 21 C 0.054 3.946 22 O -0.364 6.364 23 H 0.056 0.944 24 H 0.068 0.932 25 H 0.063 0.937 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.052 0.948 29 H 0.146 0.854 30 H 0.388 0.612 31 H 0.271 0.729 32 H 0.094 0.906 33 H 0.067 0.933 34 H 0.092 0.908 35 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.140 13.307 5.400 14.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.029 3.971 3 H 0.068 0.932 4 C -0.189 4.189 5 C -0.039 4.039 6 N -0.317 5.317 7 C 0.296 3.704 8 O -0.430 6.430 9 C 0.181 3.819 10 O -0.467 6.467 11 N -0.144 5.144 12 C -0.514 4.514 13 H 0.128 0.872 14 C -0.208 4.208 15 N -0.502 5.502 16 Si 0.920 3.080 17 H -0.201 1.201 18 H -0.205 1.205 19 H -0.205 1.205 20 C -0.043 4.043 21 C -0.024 4.024 22 O -0.283 6.283 23 H 0.075 0.925 24 H 0.087 0.913 25 H 0.082 0.918 26 H 0.096 0.904 27 H 0.100 0.900 28 H 0.070 0.930 29 H 0.163 0.837 30 H 0.223 0.777 31 H 0.083 0.917 32 H 0.112 0.888 33 H 0.085 0.915 34 H 0.110 0.890 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.180 11.955 4.409 13.410 hybrid contribution 0.204 1.313 1.525 2.023 sum -3.976 13.268 5.934 15.069 Atomic orbital electron populations 1.21916 0.94037 1.02973 1.01840 1.21199 0.95014 0.94950 0.85946 0.93151 1.21920 0.97054 1.03181 0.96790 1.22653 0.93105 0.92264 0.95855 1.47459 1.63894 1.10096 1.10260 1.20692 0.77589 0.82107 0.89965 1.90649 1.46129 1.53855 1.52414 1.18818 0.90435 0.84719 0.87927 1.90351 1.50024 1.52854 1.53513 1.41620 1.48670 1.11751 1.12341 1.20751 1.41177 1.01677 0.87796 0.87231 1.26939 0.94245 0.91814 1.07781 1.70694 1.36205 1.37680 1.05644 0.83083 0.77053 0.76577 0.71254 1.20076 1.20531 1.20522 1.22659 0.97471 1.00514 0.83699 1.22799 0.84017 0.96114 0.99475 1.87482 1.34392 1.65134 1.41263 0.92467 0.91271 0.91800 0.90438 0.89953 0.92993 0.83746 0.77743 0.91700 0.88784 0.91481 0.88999 0.92898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.43 37.16 0.35 -1.38 16 2 C 0.09 1.14 2.64 -29.30 -0.08 1.07 16 3 H 0.05 0.57 7.28 -51.93 -0.38 0.19 16 4 C -0.15 -2.34 4.67 -28.01 -0.13 -2.47 16 5 C 0.08 1.38 5.05 -3.84 -0.02 1.37 16 6 N -0.58 -10.68 2.54 -172.31 -0.44 -11.12 16 7 C 0.51 11.46 7.67 -11.87 -0.09 11.37 16 8 O -0.55 -13.31 15.77 5.43 0.09 -13.23 16 9 C 0.40 9.82 7.65 -11.88 -0.09 9.73 16 10 O -0.58 -14.53 11.83 5.36 0.06 -14.46 16 11 N -0.51 -13.43 5.24 -11.59 -0.06 -13.50 16 12 C -0.38 -10.48 9.67 -15.14 -0.15 -10.63 16 13 H 0.11 3.05 7.15 -52.49 -0.38 2.68 16 14 C 0.00 -0.01 5.51 -17.39 -0.10 -0.10 16 15 N -0.87 -23.89 13.66 55.53 0.76 -23.13 16 16 Si 1.10 22.91 29.93 -169.99 -5.09 17.83 16 17 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 18 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 19 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 20 C 0.08 1.17 6.56 -2.44 -0.02 1.16 16 21 C 0.05 0.66 6.50 37.83 0.25 0.91 16 22 O -0.36 -5.48 9.82 -34.10 -0.34 -5.81 16 23 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.07 0.68 8.13 -51.93 -0.42 0.25 16 25 H 0.06 0.81 8.14 -51.92 -0.42 0.39 16 26 H 0.08 1.48 7.88 -51.93 -0.41 1.07 16 27 H 0.08 1.13 8.13 -51.93 -0.42 0.71 16 28 H 0.05 0.70 8.10 -51.93 -0.42 0.28 16 29 H 0.15 2.81 4.78 -54.14 -0.26 2.55 16 30 H 0.39 10.12 6.20 -40.82 -0.25 9.87 16 31 H 0.27 7.43 6.78 -40.82 -0.28 7.15 16 32 H 0.09 1.54 6.99 -51.93 -0.36 1.18 16 33 H 0.07 0.84 8.14 -51.92 -0.42 0.42 16 34 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.05 0.54 7.21 -51.93 -0.37 0.16 16 LS Contribution 286.67 15.07 4.32 4.32 Total: -1.00 -31.01 286.67 -5.20 -36.22 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: -4.44 Total: 11.87 kcal Atomic # 6 Polarization: 11.09 SS G_CDS: -0.07 Total: 11.02 kcal Atomic # 7 Polarization: -48.00 SS G_CDS: 0.26 Total: -47.74 kcal Atomic # 8 Polarization: -33.32 SS G_CDS: -0.19 Total: -33.50 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -5.09 Total: 17.83 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -31.01 -5.20 -36.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720438588.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.763 kcal (2) G-P(sol) polarization free energy of solvation -31.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.15 seconds