Wall clock time and date at job start Mon Mar 30 2020 21:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46930 * 2 1 4 4 H 1.08999 * 109.47216 * 56.49959 * 3 2 1 5 5 C 1.50702 * 109.47191 * 176.50037 * 3 2 1 6 6 H 1.08000 * 120.00184 * 114.51709 * 5 3 2 7 7 C 1.37874 * 119.99774 * 294.51346 * 5 3 2 8 8 N 1.31517 * 120.00209 * 359.12331 * 7 5 3 9 9 Si 1.86799 * 120.00039 * 179.12410 * 7 5 3 10 10 H 1.48494 * 109.47211 * 265.01282 * 9 7 5 11 11 H 1.48500 * 109.46758 * 25.01784 * 9 7 5 12 12 H 1.48503 * 109.47120 * 145.01328 * 9 7 5 13 13 N 1.46498 * 109.47202 * 296.50143 * 3 2 1 14 14 C 1.34776 * 120.00314 * 84.99969 * 13 3 2 15 15 O 1.21276 * 119.99850 * 359.97438 * 14 13 3 16 16 C 1.50704 * 119.99957 * 180.02562 * 14 13 3 17 17 N 1.46895 * 109.54365 * 39.50565 * 16 14 13 18 18 C 1.53178 * 109.54269 * 279.32613 * 16 14 13 19 19 C 1.53276 * 109.06549 * 297.03041 * 18 16 14 20 20 O 1.42898 * 109.46336 * 302.44748 * 19 18 16 21 21 C 1.42903 * 114.10125 * 61.15469 * 20 19 18 22 22 C 1.53095 * 109.41569 * 298.84935 * 21 20 19 23 23 H 1.08997 * 109.47510 * 299.99585 * 1 2 3 24 24 H 1.09005 * 109.47404 * 60.00061 * 1 2 3 25 25 H 1.09001 * 109.47155 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47510 * 240.00415 * 2 1 3 27 27 H 1.08995 * 109.47376 * 119.99942 * 2 1 3 28 28 H 0.96999 * 120.00305 * 179.97438 * 8 7 5 29 29 H 0.97002 * 119.99808 * 264.99526 * 13 3 2 30 30 H 1.00897 * 111.00524 * 300.00146 * 17 16 14 31 31 H 1.00902 * 111.00503 * 63.95449 * 17 16 14 32 32 H 1.09005 * 109.52027 * 57.02192 * 18 16 14 33 33 H 1.09000 * 109.51752 * 177.20913 * 18 16 14 34 34 H 1.08994 * 109.46047 * 182.44680 * 19 18 16 35 35 H 1.09000 * 109.46788 * 62.44593 * 19 18 16 36 36 H 1.08998 * 109.48675 * 178.86160 * 21 20 19 37 37 H 1.09000 * 109.48919 * 58.82877 * 21 20 19 38 38 H 1.09001 * 109.51812 * 297.69771 * 22 21 20 39 39 H 1.08996 * 109.57579 * 177.54273 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6263 1.9741 0.8569 5 6 3.5445 1.4435 0.0867 6 1 4.1328 1.8145 -0.7395 7 6 4.1699 0.9707 1.2209 8 7 3.4532 0.5349 2.2339 9 14 6.0352 0.9491 1.3188 10 1 6.5367 -0.3886 0.9136 11 1 6.5905 1.9826 0.4085 12 1 6.4611 1.2363 2.7121 13 7 1.6216 2.1084 -1.2361 14 6 0.4019 2.6761 -1.3162 15 8 -0.3495 2.6354 -0.3652 16 6 -0.0285 3.3605 -2.5880 17 7 0.4371 2.5849 -3.7453 18 6 0.5713 4.7690 -2.6402 19 6 0.0170 5.5928 -1.4725 20 8 -1.4097 5.6238 -1.5465 21 6 -2.0268 4.3380 -1.4560 22 6 -1.5564 3.4645 -2.6220 23 1 -0.3634 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 3.8931 0.2020 3.0316 29 1 2.2226 2.1407 -1.9968 30 1 1.4429 2.5050 -3.7462 31 1 0.0022 1.6748 -3.7694 32 1 1.6567 4.7059 -2.5614 33 1 0.3006 5.2454 -3.5825 34 1 0.4061 6.6094 -1.5284 35 1 0.3222 5.1382 -0.5300 36 1 -3.1100 4.4507 -1.5001 37 1 -1.7484 3.8666 -0.5134 38 1 -1.8699 3.9147 -3.5639 39 1 -1.9914 2.4693 -2.5314 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000149717847.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:18:25 Heat of formation + Delta-G solvation = -90.647199 kcal Electronic energy + Delta-G solvation = -20816.169112 eV Core-core repulsion = 17758.334904 eV Total energy + Delta-G solvation = -3057.834208 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 256.157 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.51375 -37.88833 -35.28206 -35.00572 -32.42727 -31.17043 -30.74475 -29.92480 -27.11936 -24.25906 -23.53655 -23.09587 -21.70906 -19.73533 -19.20074 -17.05839 -16.26877 -16.07621 -15.88517 -15.49984 -15.21699 -14.76919 -14.42284 -14.31843 -13.57401 -13.09834 -12.99228 -12.74697 -12.20167 -12.13714 -11.91833 -11.57605 -11.36807 -11.15516 -11.04673 -10.90992 -10.66123 -10.49124 -10.36457 -10.27504 -9.84541 -9.70360 -9.30354 -9.12060 -8.62867 -8.25237 -7.94976 -6.21539 -4.30445 3.17728 3.19599 3.26403 3.27984 3.86862 4.10274 4.27988 4.45520 4.75025 4.92806 5.11626 5.14627 5.30252 5.51036 5.67193 5.72003 5.79315 5.87598 5.96405 6.14396 6.17643 6.25531 6.28601 6.40856 6.53160 6.87421 6.92782 7.08245 7.23136 7.30169 7.32897 7.43651 7.49929 7.61598 7.76065 8.01479 8.51922 8.68754 8.98581 9.37088 10.85462 Molecular weight = 256.16amu Principal moments of inertia in cm(-1) A = 0.027465 B = 0.006435 C = 0.006067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.245396 B = 4350.060226 C = 4614.345065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.122 4.122 3 C 0.270 3.730 4 H 0.053 0.947 5 C -0.538 4.538 6 H 0.060 0.940 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.900 3.100 10 H -0.280 1.280 11 H -0.273 1.273 12 H -0.284 1.284 13 N -0.705 5.705 14 C 0.474 3.526 15 O -0.540 6.540 16 C 0.100 3.900 17 N -0.830 5.830 18 C -0.136 4.136 19 C 0.060 3.940 20 O -0.386 6.386 21 C 0.040 3.960 22 C -0.121 4.121 23 H 0.052 0.948 24 H 0.036 0.964 25 H 0.023 0.977 26 H 0.032 0.968 27 H 0.088 0.912 28 H 0.265 0.735 29 H 0.383 0.617 30 H 0.343 0.657 31 H 0.346 0.654 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.057 0.943 36 H 0.084 0.916 37 H 0.099 0.901 38 H 0.076 0.924 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.416 4.463 -9.344 11.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.161 4.161 3 C 0.169 3.831 4 H 0.071 0.929 5 C -0.576 4.576 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.727 3.273 10 H -0.206 1.206 11 H -0.198 1.198 12 H -0.210 1.210 13 N -0.354 5.354 14 C 0.257 3.743 15 O -0.418 6.418 16 C 0.004 3.996 17 N -0.361 5.361 18 C -0.174 4.174 19 C -0.017 4.017 20 O -0.305 6.305 21 C -0.036 4.036 22 C -0.160 4.160 23 H 0.071 0.929 24 H 0.055 0.945 25 H 0.042 0.958 26 H 0.050 0.950 27 H 0.106 0.894 28 H 0.075 0.925 29 H 0.216 0.784 30 H 0.157 0.843 31 H 0.159 0.841 32 H 0.094 0.906 33 H 0.103 0.897 34 H 0.111 0.889 35 H 0.075 0.925 36 H 0.102 0.898 37 H 0.116 0.884 38 H 0.095 0.905 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.341 5.078 -8.895 12.046 hybrid contribution 1.965 -1.146 0.375 2.306 sum -4.375 3.932 -8.520 10.354 Atomic orbital electron populations 1.21838 0.98219 0.98142 1.01193 1.21873 0.92690 0.99863 1.01658 1.18798 0.93972 0.88826 0.81550 0.92913 1.21195 0.90487 1.43590 1.02314 0.92182 1.24891 0.98695 0.94766 0.95218 1.69934 1.35385 1.41099 1.05351 0.86458 0.84867 0.78374 0.77570 1.20560 1.19813 1.21000 1.46580 1.14851 1.55484 1.18435 1.21406 0.82856 0.79819 0.90248 1.90536 1.52418 1.59615 1.39223 1.21159 0.96863 0.94425 0.87175 1.58943 1.12272 1.22582 1.42348 1.22191 1.00772 0.93579 1.00894 1.22574 0.81454 1.00396 0.97287 1.87833 1.18925 1.29259 1.94478 1.23113 0.96950 0.83501 1.00077 1.21956 0.92381 1.01333 1.00334 0.92921 0.94511 0.95763 0.94964 0.89353 0.92504 0.78426 0.84340 0.84111 0.90594 0.89666 0.88893 0.92471 0.89768 0.88374 0.90498 0.91033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 8.49 37.16 0.32 -2.57 16 2 C -0.12 -2.82 5.49 -26.73 -0.15 -2.97 16 3 C 0.27 6.45 2.15 -69.08 -0.15 6.31 16 4 H 0.05 1.49 7.58 -51.93 -0.39 1.10 16 5 C -0.54 -13.68 8.67 -34.44 -0.30 -13.98 16 6 H 0.06 1.47 7.72 -52.49 -0.41 1.06 16 7 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 8 N -0.88 -24.25 11.76 55.43 0.65 -23.60 16 9 Si 0.90 20.18 29.54 -169.99 -5.02 15.16 16 10 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 11 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 12 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 13 N -0.71 -13.47 4.91 -54.93 -0.27 -13.74 16 14 C 0.47 8.57 4.17 -10.98 -0.05 8.52 16 15 O -0.54 -11.38 10.26 5.56 0.06 -11.32 16 16 C 0.10 1.43 0.92 -132.57 -0.12 1.31 16 17 N -0.83 -10.09 8.80 -0.04 0.00 -10.09 16 18 C -0.14 -1.84 5.23 -26.50 -0.14 -1.98 16 19 C 0.06 0.89 6.61 37.30 0.25 1.13 16 20 O -0.39 -6.11 10.77 -35.23 -0.38 -6.49 16 21 C 0.04 0.61 6.54 37.21 0.24 0.85 16 22 C -0.12 -1.70 4.98 -26.59 -0.13 -1.83 16 23 H 0.05 1.20 7.76 -51.93 -0.40 0.80 16 24 H 0.04 0.74 5.68 -51.93 -0.30 0.44 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.09 2.29 6.48 -51.93 -0.34 1.95 16 28 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 29 H 0.38 6.43 7.06 -40.82 -0.29 6.14 16 30 H 0.34 3.89 7.54 -39.29 -0.30 3.60 16 31 H 0.35 4.07 8.98 -39.29 -0.35 3.72 16 32 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.06 0.98 7.18 -51.93 -0.37 0.61 16 36 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.10 1.75 5.21 -51.93 -0.27 1.48 16 38 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 300.52 15.07 4.53 4.53 Total: -1.00 -28.25 300.52 -6.68 -34.94 By element: Atomic # 1 Polarization: 20.06 SS G_CDS: -5.93 Total: 14.13 kcal Atomic # 6 Polarization: -3.19 SS G_CDS: -0.32 Total: -3.51 kcal Atomic # 7 Polarization: -47.81 SS G_CDS: 0.38 Total: -47.43 kcal Atomic # 8 Polarization: -17.49 SS G_CDS: -0.32 Total: -17.81 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -28.25 -6.68 -34.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000149717847.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.711 kcal (2) G-P(sol) polarization free energy of solvation -28.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds