Wall clock time and date at job start Mon Mar 30 2020 21:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99874 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00281 * 3 2 1 5 5 H 1.48501 * 109.47062 * 30.00232 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00031 * 3 2 1 7 7 C 1.37876 * 120.00355 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99840 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00339 * 179.97438 * 7 2 1 10 10 C 1.53002 * 109.47300 * 179.97438 * 9 7 2 11 11 N 1.46506 * 109.47035 * 179.97438 * 10 9 7 12 12 C 1.34777 * 119.99873 * 179.97438 * 11 10 9 13 13 O 1.21284 * 119.99754 * 0.02562 * 12 11 10 14 14 C 1.50696 * 120.00137 * 180.02562 * 12 11 10 15 15 C 1.53000 * 109.54273 * 59.82624 * 14 12 11 16 16 N 1.46905 * 109.47045 * 299.99883 * 15 14 12 17 17 C 1.53178 * 109.54229 * 299.55811 * 14 12 11 18 18 C 1.53090 * 109.16307 * 297.11158 * 17 14 12 19 19 O 1.42899 * 109.41602 * 302.39067 * 18 17 14 20 20 C 1.42902 * 114.09845 * 61.16099 * 19 18 17 21 21 C 1.53090 * 109.41244 * 298.84091 * 20 19 18 22 22 H 0.96991 * 119.99886 * 359.97438 * 1 2 3 23 23 H 1.09004 * 109.47043 * 59.99933 * 9 7 2 24 24 H 1.09004 * 109.47476 * 300.00008 * 9 7 2 25 25 H 1.09004 * 109.46930 * 60.00105 * 10 9 7 26 26 H 1.09000 * 109.47312 * 300.00049 * 10 9 7 27 27 H 0.96999 * 120.00080 * 0.02562 * 11 10 9 28 28 H 1.08993 * 109.47353 * 59.99795 * 15 14 12 29 29 H 1.09001 * 109.47105 * 180.02562 * 15 14 12 30 30 H 1.00896 * 111.00061 * 179.97438 * 16 15 14 31 31 H 1.00898 * 111.00381 * 303.95657 * 16 15 14 32 32 H 1.09003 * 109.52265 * 57.01815 * 17 14 12 33 33 H 1.09003 * 109.52205 * 177.20248 * 17 14 12 34 34 H 1.09007 * 109.47987 * 182.40900 * 18 17 14 35 35 H 1.08999 * 109.49066 * 62.38675 * 18 17 14 36 36 H 1.09002 * 109.48128 * 178.85938 * 20 19 18 37 37 H 1.08994 * 109.48929 * 58.82881 * 20 19 18 38 38 H 1.09000 * 109.52651 * 297.70385 * 21 20 19 39 39 H 1.09001 * 109.57330 * 177.54419 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0010 11 7 5.4867 -2.6364 -0.0022 12 6 6.1606 -3.8036 -0.0018 13 8 5.5541 -4.8539 -0.0009 14 6 7.6675 -3.8036 -0.0024 15 6 8.1799 -3.0781 1.2434 16 7 7.6911 -1.6928 1.2391 17 6 8.1794 -3.0922 -1.2587 18 6 7.7259 -3.8703 -2.4967 19 8 8.2102 -5.2124 -2.4180 20 6 7.7265 -5.9419 -1.2885 21 6 8.1800 -5.2471 -0.0019 22 1 -0.4849 0.8400 0.0004 23 1 3.8752 -0.6803 0.8889 24 1 3.8746 -0.6800 -0.8911 25 1 3.6579 -3.1505 -0.8908 26 1 3.6586 -3.1502 0.8892 27 1 5.9716 -1.7964 -0.0025 28 1 7.8176 -3.5884 2.1358 29 1 9.2699 -3.0784 1.2416 30 1 8.0157 -1.1923 2.0528 31 1 7.9595 -1.2172 0.3907 32 1 7.7742 -2.0810 -1.2954 33 1 9.2683 -3.0486 -1.2345 34 1 8.1234 -3.3923 -3.3922 35 1 6.6369 -3.8787 -2.5422 36 1 8.1244 -6.9564 -1.3134 37 1 6.6375 -5.9777 -1.3178 38 1 9.2689 -5.2470 0.0478 39 1 7.7761 -5.7767 0.8610 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000168257621.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:18:43 Heat of formation + Delta-G solvation = -93.338863 kcal Electronic energy + Delta-G solvation = -20225.035223 eV Core-core repulsion = 17167.084296 eV Total energy + Delta-G solvation = -3057.950927 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 256.157 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.83685 -37.97599 -35.96483 -34.92006 -32.72135 -32.22761 -31.20062 -29.93211 -26.82759 -25.07714 -23.70708 -22.62970 -21.82501 -20.63707 -19.05334 -16.98356 -16.74121 -16.49371 -16.03422 -15.41842 -15.28071 -15.13832 -14.63050 -14.31937 -14.13874 -13.84984 -13.51260 -13.15698 -12.81996 -12.58146 -12.41250 -12.17659 -11.80444 -11.42904 -11.40699 -11.15276 -10.71251 -10.56088 -10.30634 -10.17544 -9.91259 -9.63138 -9.32633 -9.14904 -8.89560 -8.59224 -8.31607 -6.07776 -4.07210 3.00205 3.27087 3.34662 3.37010 3.68059 3.85937 4.13722 4.40823 4.46155 4.56366 4.69700 4.91307 5.09301 5.13715 5.25530 5.26257 5.37468 5.44192 5.50834 5.60214 5.69190 5.76615 5.86896 5.95142 6.11353 6.23676 6.28981 6.64436 6.78982 6.94418 7.11249 7.17045 7.24380 7.31928 7.72016 8.14029 8.48225 8.75542 8.97179 9.52858 11.05459 Molecular weight = 256.16amu Principal moments of inertia in cm(-1) A = 0.029347 B = 0.005284 C = 0.005028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.886569 B = 5298.044760 C = 5567.771308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.069 3.931 3 Si 0.882 3.118 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.521 4.521 8 H 0.075 0.925 9 C -0.020 4.020 10 C 0.129 3.871 11 N -0.704 5.704 12 C 0.521 3.479 13 O -0.555 6.555 14 C -0.083 4.083 15 C 0.076 3.924 16 N -0.849 5.849 17 C -0.145 4.145 18 C 0.059 3.941 19 O -0.386 6.386 20 C 0.049 3.951 21 C -0.126 4.126 22 H 0.264 0.736 23 H 0.023 0.977 24 H 0.015 0.985 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.403 0.597 28 H 0.079 0.921 29 H 0.039 0.961 30 H 0.350 0.650 31 H 0.340 0.660 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.054 0.946 36 H 0.090 0.910 37 H 0.081 0.919 38 H 0.071 0.929 39 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.322 -4.524 -0.311 21.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.133 4.133 3 Si 0.709 3.291 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.559 4.559 8 H 0.093 0.907 9 C -0.057 4.057 10 C 0.006 3.994 11 N -0.356 5.356 12 C 0.305 3.695 13 O -0.435 6.435 14 C -0.086 4.086 15 C -0.055 4.055 16 N -0.382 5.382 17 C -0.183 4.183 18 C -0.018 4.018 19 O -0.304 6.304 20 C -0.027 4.027 21 C -0.164 4.164 22 H 0.074 0.926 23 H 0.042 0.958 24 H 0.033 0.967 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.242 0.758 28 H 0.098 0.902 29 H 0.057 0.943 30 H 0.164 0.836 31 H 0.154 0.846 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.113 0.887 35 H 0.073 0.927 36 H 0.108 0.892 37 H 0.099 0.901 38 H 0.090 0.910 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 20.099 -5.516 -0.401 20.846 hybrid contribution 1.362 1.809 0.300 2.284 sum 21.461 -3.707 -0.101 21.779 Atomic orbital electron populations 1.69907 1.06300 1.26972 1.50704 1.24998 0.94742 0.99122 0.94444 0.86754 0.80366 0.83555 0.78435 1.20311 1.21366 1.18947 1.20953 0.88823 0.94813 1.51337 0.90727 1.19756 0.97713 0.91500 0.96756 1.21461 0.76832 0.99908 1.01160 1.46412 1.08493 1.08490 1.72201 1.20053 0.88576 0.84295 0.76547 1.90616 1.70102 1.31495 1.51293 1.20992 0.93960 0.97408 0.96263 1.21748 0.96861 0.89588 0.97289 1.58640 1.67863 1.03459 1.08208 1.22273 1.01903 0.99764 0.94396 1.22544 0.99026 0.82853 0.97369 1.87873 1.71895 1.24395 1.46274 1.22841 1.01170 0.94607 0.84120 1.21955 1.00580 0.93641 1.00268 0.92625 0.95842 0.96715 0.92413 0.92269 0.75848 0.90215 0.94319 0.83633 0.84596 0.90239 0.90301 0.88661 0.92738 0.89206 0.90097 0.90995 0.90028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.63 13.96 55.43 0.77 -26.86 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 3 Si 0.88 21.18 27.47 -169.99 -4.67 16.51 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.26 -6.02 6.54 56.52 0.37 -5.65 16 7 C -0.52 -14.78 9.66 -34.44 -0.33 -15.12 16 8 H 0.07 2.30 7.99 -52.49 -0.42 1.88 16 9 C -0.02 -0.46 4.16 -27.88 -0.12 -0.57 16 10 C 0.13 2.72 5.61 -4.04 -0.02 2.70 16 11 N -0.70 -11.96 5.06 -60.29 -0.30 -12.27 16 12 C 0.52 8.50 5.14 -10.99 -0.06 8.44 16 13 O -0.56 -10.97 13.84 5.55 0.08 -10.89 16 14 C -0.08 -0.97 0.52 -155.48 -0.08 -1.05 16 15 C 0.08 0.73 5.75 -3.82 -0.02 0.71 16 16 N -0.85 -7.83 7.11 -10.37 -0.07 -7.90 16 17 C -0.15 -1.47 4.44 -26.59 -0.12 -1.58 16 18 C 0.06 0.70 6.61 37.20 0.25 0.95 16 19 O -0.39 -5.15 10.77 -35.23 -0.38 -5.53 16 20 C 0.05 0.63 6.55 37.20 0.24 0.87 16 21 C -0.13 -1.43 4.56 -26.59 -0.12 -1.55 16 22 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 23 H 0.02 0.54 7.20 -51.93 -0.37 0.17 16 24 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 25 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 26 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 27 H 0.40 6.04 5.51 -40.82 -0.22 5.82 16 28 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 29 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.35 2.61 9.08 -39.29 -0.36 2.25 16 31 H 0.34 2.66 6.85 -39.29 -0.27 2.39 16 32 H 0.08 0.73 6.14 -51.93 -0.32 0.41 16 33 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.10 0.93 8.14 -51.92 -0.42 0.51 16 35 H 0.05 0.76 7.38 -51.93 -0.38 0.38 16 36 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.08 1.26 5.80 -51.93 -0.30 0.96 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.08 0.96 8.03 -51.93 -0.42 0.54 16 LS Contribution 302.43 15.07 4.56 4.56 Total: -1.00 -32.88 302.43 -6.50 -39.38 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -6.01 Total: 7.31 kcal Atomic # 6 Polarization: -3.84 SS G_CDS: -0.48 Total: -4.32 kcal Atomic # 7 Polarization: -47.42 SS G_CDS: 0.40 Total: -47.03 kcal Atomic # 8 Polarization: -16.11 SS G_CDS: -0.30 Total: -16.42 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.67 Total: 16.51 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -32.88 -6.50 -39.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168257621.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.955 kcal (2) G-P(sol) polarization free energy of solvation -32.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds