Wall clock time and date at job start Mon Mar 30 2020 21:18:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.46615 * 2 1 4 4 C 1.53002 * 109.46945 * 180.02562 * 3 2 1 5 5 N 1.46893 * 109.47049 * 180.02562 * 4 3 2 6 6 C 1.47019 * 111.00196 * 75.68183 * 5 4 3 7 7 C 1.53092 * 109.25980 * 182.39207 * 6 5 4 8 8 O 1.43021 * 109.25983 * 303.15330 * 7 6 5 9 9 C 1.43012 * 113.74023 * 58.66746 * 8 7 6 10 10 C 1.47015 * 110.99922 * 199.31551 * 5 4 3 11 11 H 1.09004 * 109.50529 * 297.54221 * 10 5 4 12 12 C 1.50700 * 109.50865 * 57.67453 * 10 5 4 13 13 O 1.21290 * 119.99730 * 27.90861 * 12 10 5 14 14 N 1.34772 * 120.00038 * 207.91566 * 12 10 5 15 15 C 1.37099 * 120.00150 * 179.97438 * 14 12 10 16 16 H 1.08004 * 119.99504 * 0.02562 * 15 14 12 17 17 C 1.38946 * 120.00146 * 179.97438 * 15 14 12 18 18 N 1.31409 * 120.00002 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00023 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.46941 * 90.00270 * 19 17 15 21 21 H 1.48504 * 109.47353 * 210.00178 * 19 17 15 22 22 H 1.48499 * 109.47292 * 330.00452 * 19 17 15 23 23 H 1.09001 * 109.46921 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46907 * 299.99939 * 1 2 3 25 25 H 1.08996 * 109.47408 * 60.00102 * 1 2 3 26 26 H 1.08990 * 109.46928 * 240.00546 * 2 1 3 27 27 H 1.09001 * 109.47251 * 119.99449 * 2 1 3 28 28 H 1.09003 * 109.47086 * 59.99980 * 3 2 1 29 29 H 1.08996 * 109.47149 * 300.00057 * 3 2 1 30 30 H 1.09001 * 109.46878 * 59.99876 * 4 3 2 31 31 H 1.09004 * 109.47076 * 300.00223 * 4 3 2 32 32 H 1.09006 * 109.50459 * 302.32778 * 6 5 4 33 33 H 1.08996 * 109.50669 * 62.45525 * 6 5 4 34 34 H 1.09007 * 109.51036 * 63.08482 * 7 6 5 35 35 H 1.08996 * 109.51019 * 183.21469 * 7 6 5 36 36 H 1.08993 * 109.50790 * 61.26866 * 9 8 7 37 37 H 1.09002 * 109.50891 * 181.39934 * 9 8 7 38 38 H 0.97005 * 120.00068 * 0.02562 * 14 12 10 39 39 H 0.97005 * 119.99743 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5700 1.4427 -0.0006 5 7 4.0595 2.8276 0.0000 6 6 3.9156 3.4368 1.3303 7 6 4.3808 4.8941 1.2714 8 8 5.7296 4.9400 0.7979 9 6 5.9059 4.3559 -0.4956 10 6 5.4561 2.8930 -0.4546 11 1 6.0900 2.3365 0.2359 12 6 5.5652 2.2942 -1.8332 13 8 4.6121 2.3204 -2.5829 14 7 6.7217 1.7294 -2.2330 15 6 6.8208 1.1842 -3.4870 16 1 5.9721 1.2077 -4.1546 17 6 8.0133 0.6024 -3.8994 18 7 9.0460 0.5743 -3.0872 19 14 8.1481 -0.1411 -5.6077 20 1 8.6120 0.8963 -6.5638 21 1 9.1209 -1.2629 -5.5841 22 1 6.8187 -0.6476 -6.0335 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.8933 -0.5137 -0.8900 27 1 1.8934 -0.5137 0.8900 28 1 1.6765 1.9564 0.8900 29 1 1.6766 1.9564 -0.8899 30 1 3.9329 0.9290 -0.8909 31 1 3.9337 0.9287 0.8891 32 1 2.8700 3.4005 1.6360 33 1 4.5249 2.8890 2.0492 34 1 3.7376 5.4544 0.5927 35 1 4.3298 5.3331 2.2677 36 1 5.3071 4.9004 -1.2256 37 1 6.9578 4.4055 -0.7771 38 1 7.4838 1.7080 -1.6332 39 1 9.8784 0.1678 -3.3751 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184349421.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:18:58 Heat of formation + Delta-G solvation = -88.498437 kcal Electronic energy + Delta-G solvation = -19959.298178 eV Core-core repulsion = 16901.557148 eV Total energy + Delta-G solvation = -3057.741030 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 256.157 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.82179 -37.65667 -36.24212 -34.16706 -33.77985 -31.54165 -30.75183 -29.42052 -26.31688 -25.30952 -23.84646 -22.46566 -20.87923 -20.57997 -19.02623 -17.90346 -16.43200 -16.14751 -15.88370 -15.34048 -14.84124 -14.66476 -14.46176 -13.90250 -13.73971 -13.55124 -13.23824 -13.21030 -12.55890 -12.22979 -12.18472 -11.68567 -11.54128 -11.18862 -11.12321 -11.09275 -10.89394 -10.75124 -10.43202 -10.40973 -10.25652 -10.13354 -9.56804 -9.46136 -8.37747 -8.01816 -7.97488 -6.45421 -3.86681 3.14987 3.24746 3.30135 3.71253 3.95413 4.03008 4.20283 4.86954 5.00591 5.09919 5.13753 5.21137 5.26914 5.32361 5.34447 5.42234 5.51574 5.58610 5.75322 5.81642 5.83878 5.90077 5.94080 5.97282 6.04124 6.17839 6.18902 6.25257 6.28198 6.52808 6.57818 7.20612 7.29823 7.34214 7.51624 8.01753 8.56741 9.13589 9.49019 10.00446 10.71954 Molecular weight = 256.16amu Principal moments of inertia in cm(-1) A = 0.016743 B = 0.006519 C = 0.004962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.973878 B = 4294.106236 C = 5641.702122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C -0.106 4.106 4 C 0.055 3.945 5 N -0.511 5.511 6 C 0.017 3.983 7 C 0.063 3.937 8 O -0.386 6.386 9 C 0.078 3.922 10 C 0.042 3.958 11 H 0.054 0.946 12 C 0.446 3.554 13 O -0.572 6.572 14 N -0.560 5.560 15 C -0.301 4.301 16 H 0.104 0.896 17 C 0.024 3.976 18 N -0.899 5.899 19 Si 0.930 3.070 20 H -0.277 1.277 21 H -0.283 1.283 22 H -0.269 1.269 23 H 0.050 0.950 24 H 0.050 0.950 25 H 0.054 0.946 26 H 0.064 0.936 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.073 0.927 30 H 0.089 0.911 31 H 0.026 0.974 32 H 0.085 0.915 33 H 0.038 0.962 34 H 0.059 0.941 35 H 0.094 0.906 36 H 0.065 0.935 37 H 0.102 0.898 38 H 0.392 0.608 39 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.019 2.855 9.457 13.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.163 4.163 3 C -0.144 4.144 4 C -0.072 4.072 5 N -0.236 5.236 6 C -0.111 4.111 7 C -0.014 4.014 8 O -0.304 6.304 9 C 0.001 3.999 10 C -0.070 4.070 11 H 0.072 0.928 12 C 0.231 3.769 13 O -0.455 6.455 14 N -0.196 5.196 15 C -0.430 4.430 16 H 0.122 0.878 17 C -0.178 4.178 18 N -0.540 5.540 19 Si 0.757 3.243 20 H -0.203 1.203 21 H -0.209 1.209 22 H -0.194 1.194 23 H 0.069 0.931 24 H 0.069 0.931 25 H 0.073 0.927 26 H 0.083 0.917 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.091 0.909 30 H 0.107 0.893 31 H 0.044 0.956 32 H 0.103 0.897 33 H 0.056 0.944 34 H 0.077 0.923 35 H 0.112 0.888 36 H 0.084 0.916 37 H 0.120 0.880 38 H 0.225 0.775 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.595 3.139 8.685 13.317 hybrid contribution 0.963 -1.075 0.015 1.443 sum -8.633 2.064 8.700 12.429 Atomic orbital electron populations 1.21741 0.96045 1.01182 1.01628 1.21494 0.95602 0.97207 1.01989 1.21491 0.94641 0.96106 1.02176 1.22192 0.95636 0.88116 1.01288 1.61884 1.18521 1.19320 1.23860 1.22849 1.01688 0.96173 0.90386 1.22643 0.83882 0.95171 0.99733 1.87961 1.27435 1.80358 1.34686 1.22591 1.02016 0.90612 0.84693 1.22179 0.89776 0.98103 0.96986 0.92807 1.19404 0.84638 0.84822 0.88054 1.90539 1.37851 1.61943 1.55165 1.41947 1.11582 1.50527 1.15557 1.19705 0.99046 1.33236 0.91046 0.87830 1.25272 0.94996 0.97683 0.99827 1.69616 1.02950 1.44973 1.36442 0.85858 0.78288 0.78530 0.81623 1.20316 1.20903 1.19393 0.93078 0.93107 0.92650 0.91685 0.92529 0.92839 0.90850 0.89283 0.95576 0.89686 0.94352 0.92289 0.88833 0.91627 0.87984 0.77452 0.91773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.91 37.16 0.37 -1.23 16 2 C -0.12 -1.59 5.93 -26.73 -0.16 -1.75 16 3 C -0.11 -1.52 5.32 -26.73 -0.14 -1.67 16 4 C 0.06 0.94 4.63 -3.83 -0.02 0.92 16 5 N -0.51 -8.88 4.20 -227.72 -0.96 -9.84 16 6 C 0.02 0.24 5.47 -3.71 -0.02 0.22 16 7 C 0.06 0.83 7.01 37.21 0.26 1.09 16 8 O -0.39 -6.22 10.83 -35.23 -0.38 -6.60 16 9 C 0.08 1.37 6.27 37.21 0.23 1.60 16 10 C 0.04 0.80 2.38 -68.75 -0.16 0.64 16 11 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 12 C 0.45 10.53 5.64 -10.99 -0.06 10.47 16 13 O -0.57 -15.35 15.22 5.55 0.08 -15.27 16 14 N -0.56 -14.10 5.29 -10.96 -0.06 -14.16 16 15 C -0.30 -8.27 9.68 -14.93 -0.14 -8.42 16 16 H 0.10 2.99 7.16 -52.48 -0.38 2.61 16 17 C 0.02 0.64 5.50 -17.47 -0.10 0.55 16 18 N -0.90 -24.25 13.05 55.50 0.72 -23.52 16 19 Si 0.93 20.84 29.55 -169.99 -5.02 15.82 16 20 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 21 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 22 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 23 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.05 0.68 6.89 -51.93 -0.36 0.32 16 29 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.09 1.84 5.96 -51.93 -0.31 1.53 16 31 H 0.03 0.41 7.99 -51.93 -0.41 0.00 16 32 H 0.08 1.00 6.82 -51.93 -0.35 0.65 16 33 H 0.04 0.53 8.13 -51.93 -0.42 0.10 16 34 H 0.06 0.77 8.14 -51.92 -0.42 0.35 16 35 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.10 1.72 8.14 -51.93 -0.42 1.29 16 38 H 0.39 9.58 7.90 -40.82 -0.32 9.26 16 39 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 315.92 15.07 4.76 4.76 Total: -1.00 -30.01 315.92 -7.13 -37.14 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: -6.34 Total: 9.23 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: 0.06 Total: 2.43 kcal Atomic # 7 Polarization: -47.23 SS G_CDS: -0.29 Total: -47.52 kcal Atomic # 8 Polarization: -21.57 SS G_CDS: -0.30 Total: -21.87 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.01 -7.13 -37.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184349421.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.354 kcal (2) G-P(sol) polarization free energy of solvation -30.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds