Wall clock time and date at job start Mon Mar 30 2020 21:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46900 * 109.54386 * 2 1 4 4 C 1.46898 * 111.00491 * 300.18093 * 3 2 1 5 5 C 1.50698 * 109.47504 * 179.97438 * 4 3 2 6 6 O 1.21284 * 119.99612 * 359.97438 * 5 4 3 7 7 N 1.34767 * 120.00358 * 180.02562 * 5 4 3 8 8 C 1.46501 * 120.00640 * 180.02562 * 7 5 4 9 9 C 1.50695 * 109.47491 * 179.97438 * 8 7 5 10 10 H 1.08003 * 119.99941 * 359.97438 * 9 8 7 11 11 C 1.37881 * 119.99939 * 180.02562 * 9 8 7 12 12 N 1.31516 * 120.00079 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99989 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47113 * 59.99572 * 13 11 9 15 15 H 1.48496 * 109.46838 * 179.97438 * 13 11 9 16 16 H 1.48491 * 109.46987 * 299.99520 * 13 11 9 17 17 C 1.53177 * 109.60363 * 239.78808 * 2 1 3 18 18 C 1.53092 * 109.16443 * 297.05013 * 17 2 1 19 19 O 1.42905 * 109.42428 * 302.41109 * 18 17 2 20 20 C 1.42901 * 114.09770 * 61.14988 * 19 18 17 21 21 C 1.53095 * 109.41489 * 298.84274 * 20 19 18 22 22 H 1.09009 * 109.47221 * 299.82113 * 1 2 3 23 23 H 1.09001 * 109.47666 * 59.81607 * 1 2 3 24 24 H 1.08992 * 109.47562 * 179.82080 * 1 2 3 25 25 H 1.00908 * 110.99570 * 64.13620 * 3 2 1 26 26 H 1.09001 * 109.46994 * 300.00264 * 4 3 2 27 27 H 1.09000 * 109.46868 * 59.99621 * 4 3 2 28 28 H 0.97004 * 119.99766 * 0.02562 * 7 5 4 29 29 H 1.09002 * 109.46783 * 300.00576 * 8 7 5 30 30 H 1.09000 * 109.46632 * 59.99591 * 8 7 5 31 31 H 0.96995 * 120.00004 * 180.02562 * 12 11 9 32 32 H 1.09004 * 109.51365 * 177.15329 * 17 2 1 33 33 H 1.08998 * 109.53811 * 56.96774 * 17 2 1 34 34 H 1.09002 * 109.48343 * 182.42096 * 18 17 2 35 35 H 1.08999 * 109.47546 * 62.39689 * 18 17 2 36 36 H 1.09002 * 109.48282 * 58.82206 * 20 19 18 37 37 H 1.08997 * 109.48587 * 178.84728 * 20 19 18 38 38 H 1.09001 * 109.52141 * 177.51212 * 21 20 19 39 39 H 1.09000 * 109.52256 * 297.64026 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0214 1.3844 0.0000 4 6 1.5478 2.1112 -1.1855 5 6 2.0703 3.5243 -1.1504 6 8 2.7681 3.8900 -0.2283 7 7 1.7614 4.3819 -2.1430 8 6 2.2697 5.7554 -2.1092 9 6 1.7838 6.5010 -3.3253 10 1 1.1591 6.0016 -4.0511 11 6 2.1376 7.8206 -3.5119 12 7 2.8987 8.4286 -2.6284 13 14 1.5346 8.7450 -5.0190 14 1 0.0498 8.7674 -5.0248 15 1 2.0501 10.1372 -4.9847 16 1 2.0243 8.0655 -6.2452 17 6 2.0439 -0.7261 -1.2470 18 6 1.5930 -2.1883 -1.1987 19 8 2.0771 -2.7956 0.0009 20 6 1.5913 -2.1879 1.1996 21 6 2.0424 -0.7257 1.2478 22 1 -0.3634 0.5111 0.8917 23 1 -0.3634 0.5167 -0.8883 24 1 -0.3634 -1.0276 -0.0032 25 1 1.7550 1.8626 0.8477 26 1 1.9079 1.6125 -2.0853 27 1 0.4579 2.1272 -1.1905 28 1 1.2023 4.0896 -2.8799 29 1 1.9100 6.2539 -1.2091 30 1 3.3596 5.7394 -2.1047 31 1 3.1473 9.3569 -2.7595 32 1 3.1327 -0.6814 -1.2715 33 1 1.6387 -0.2492 -2.1394 34 1 1.9921 -2.7205 -2.0622 35 1 0.5041 -2.2336 -1.2152 36 1 0.5023 -2.2329 1.2145 37 1 1.9890 -2.7198 2.0638 38 1 1.6360 -0.2483 2.1394 39 1 3.1312 -0.6811 1.2748 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229899708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:20:47 Heat of formation + Delta-G solvation = -89.917908 kcal Electronic energy + Delta-G solvation = -19291.936905 eV Core-core repulsion = 16234.134322 eV Total energy + Delta-G solvation = -3057.802583 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 256.157 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.30560 -38.71367 -36.47599 -34.15806 -32.37144 -31.94952 -31.33621 -28.11319 -27.76325 -25.96816 -23.91650 -23.34182 -22.14319 -19.68407 -18.86450 -17.50098 -16.51933 -16.25384 -15.73500 -15.53888 -15.27996 -15.04115 -14.71126 -14.55180 -14.12067 -13.79861 -13.41257 -12.81358 -12.68350 -12.49215 -12.25827 -12.00255 -11.89404 -11.61036 -11.48839 -11.36420 -11.00810 -10.86882 -10.57791 -10.48234 -10.32236 -9.77362 -9.41739 -9.04636 -8.73551 -8.37406 -7.86839 -6.16970 -4.24186 3.24512 3.29290 3.30793 3.38596 3.62379 3.76915 4.27206 4.37053 4.45339 4.66137 4.79608 4.83518 4.96505 5.02251 5.18789 5.21589 5.24611 5.36203 5.40468 5.42498 5.49249 5.58156 5.63791 5.70829 5.73634 5.89820 6.01147 6.17191 6.92610 6.96826 7.31418 7.38395 7.44885 7.52058 7.66756 7.96981 8.63220 8.78254 9.11809 9.42559 10.93215 Molecular weight = 256.16amu Principal moments of inertia in cm(-1) A = 0.050712 B = 0.003487 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.007579 B = 8026.937767 C = 8285.832063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.112 3.888 3 N -0.659 5.659 4 C 0.035 3.965 5 C 0.496 3.504 6 O -0.544 6.544 7 N -0.715 5.715 8 C 0.251 3.749 9 C -0.545 4.545 10 H 0.062 0.938 11 C 0.064 3.936 12 N -0.885 5.885 13 Si 0.904 3.096 14 H -0.275 1.275 15 H -0.285 1.285 16 H -0.275 1.275 17 C -0.145 4.145 18 C 0.061 3.939 19 O -0.383 6.383 20 C 0.062 3.938 21 C -0.143 4.143 22 H 0.058 0.942 23 H 0.062 0.938 24 H 0.063 0.937 25 H 0.351 0.649 26 H 0.097 0.903 27 H 0.056 0.944 28 H 0.389 0.611 29 H 0.026 0.974 30 H 0.027 0.973 31 H 0.267 0.733 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.094 0.906 35 H 0.051 0.949 36 H 0.050 0.950 37 H 0.094 0.906 38 H 0.073 0.927 39 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.405 -20.442 3.695 21.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.021 3.979 3 N -0.291 5.291 4 C -0.097 4.097 5 C 0.280 3.720 6 O -0.422 6.422 7 N -0.364 5.364 8 C 0.130 3.870 9 C -0.583 4.583 10 H 0.080 0.920 11 C -0.140 4.140 12 N -0.523 5.523 13 Si 0.731 3.269 14 H -0.201 1.201 15 H -0.211 1.211 16 H -0.200 1.200 17 C -0.183 4.183 18 C -0.016 4.016 19 O -0.302 6.302 20 C -0.015 4.015 21 C -0.181 4.181 22 H 0.078 0.922 23 H 0.081 0.919 24 H 0.081 0.919 25 H 0.171 0.829 26 H 0.115 0.885 27 H 0.074 0.926 28 H 0.221 0.779 29 H 0.044 0.956 30 H 0.045 0.955 31 H 0.076 0.924 32 H 0.101 0.899 33 H 0.093 0.907 34 H 0.112 0.888 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.112 0.888 38 H 0.091 0.909 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.056 -20.251 4.128 21.277 hybrid contribution -1.727 0.986 -0.986 2.220 sum -6.783 -19.265 3.141 20.665 Atomic orbital electron populations 1.22712 0.97205 1.02497 1.02524 1.20930 0.91904 0.89337 0.95728 1.60286 1.62942 1.00924 1.04919 1.21924 0.98376 0.93446 0.95976 1.20371 0.81645 0.86707 0.83288 1.90664 1.38194 1.78266 1.35081 1.46443 1.51852 1.14396 1.23694 1.19082 0.95110 0.75384 0.97405 1.21193 1.33118 0.96758 1.07215 0.91976 1.24958 0.94810 0.97345 0.96903 1.69964 1.35153 1.12198 1.34957 0.86469 0.79054 0.78781 0.82571 1.20090 1.21053 1.20044 1.22296 1.03117 0.95364 0.97552 1.22638 0.98223 0.92995 0.87745 1.87929 1.71851 1.56595 1.13781 1.22613 0.98203 0.92868 0.87815 1.22208 1.03147 0.95454 0.97281 0.92250 0.91887 0.91854 0.82874 0.88509 0.92599 0.77853 0.95638 0.95542 0.92371 0.89858 0.90749 0.88785 0.93124 0.93133 0.88800 0.90863 0.89815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.69 7.69 37.16 0.29 -1.41 16 2 C 0.11 1.17 0.71 -131.42 -0.09 1.07 16 3 N -0.66 -8.94 5.72 -101.04 -0.58 -9.51 16 4 C 0.04 0.49 5.39 -4.98 -0.03 0.47 16 5 C 0.50 9.86 7.87 -10.99 -0.09 9.77 16 6 O -0.54 -13.20 16.20 5.55 0.09 -13.11 16 7 N -0.71 -14.99 5.55 -61.48 -0.34 -15.33 16 8 C 0.25 6.70 5.43 -5.20 -0.03 6.67 16 9 C -0.54 -14.81 9.28 -34.44 -0.32 -15.12 16 10 H 0.06 1.57 7.60 -52.48 -0.40 1.17 16 11 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 12 N -0.89 -26.21 13.29 55.43 0.74 -25.47 16 13 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 16 14 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 15 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 16 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 17 C -0.15 -1.45 4.60 -26.59 -0.12 -1.57 16 18 C 0.06 0.53 6.57 37.20 0.24 0.78 16 19 O -0.38 -4.01 10.77 -35.23 -0.38 -4.39 16 20 C 0.06 0.53 6.57 37.21 0.24 0.77 16 21 C -0.14 -1.37 5.18 -26.59 -0.14 -1.51 16 22 H 0.06 0.53 8.14 -51.92 -0.42 0.10 16 23 H 0.06 0.56 6.40 -51.93 -0.33 0.23 16 24 H 0.06 0.49 5.02 -51.93 -0.26 0.23 16 25 H 0.35 4.98 8.43 -39.29 -0.33 4.65 16 26 H 0.10 1.22 6.39 -51.93 -0.33 0.89 16 27 H 0.06 0.68 6.30 -51.93 -0.33 0.35 16 28 H 0.39 6.92 8.32 -40.82 -0.34 6.58 16 29 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.27 7.40 8.31 -40.82 -0.34 7.07 16 32 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.07 0.69 6.60 -51.93 -0.34 0.35 16 34 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.05 0.39 6.60 -51.93 -0.34 0.04 16 36 H 0.05 0.38 6.61 -51.93 -0.34 0.03 16 37 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 308.83 15.07 4.65 4.65 Total: -1.00 -32.45 308.83 -6.84 -39.29 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -5.87 Total: 6.47 kcal Atomic # 6 Polarization: 1.73 SS G_CDS: -0.14 Total: 1.59 kcal Atomic # 7 Polarization: -50.13 SS G_CDS: -0.18 Total: -50.32 kcal Atomic # 8 Polarization: -17.21 SS G_CDS: -0.29 Total: -17.50 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -32.45 -6.84 -39.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229899708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.623 kcal (2) G-P(sol) polarization free energy of solvation -32.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds