Wall clock time and date at job start Mon Mar 30 2020 21:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47319 * 2 1 4 4 C 1.50695 * 109.47031 * 240.00059 * 2 1 3 5 5 H 1.08007 * 119.99887 * 245.46227 * 4 2 1 6 6 C 1.37874 * 120.00332 * 65.46854 * 4 2 1 7 7 N 1.31517 * 119.99841 * 9.64554 * 6 4 2 8 8 Si 1.86806 * 120.00086 * 189.65372 * 6 4 2 9 9 H 1.48499 * 109.47226 * 84.98941 * 8 6 4 10 10 H 1.48500 * 109.46954 * 204.98980 * 8 6 4 11 11 H 1.48496 * 109.47048 * 324.98748 * 8 6 4 12 12 C 1.50702 * 109.46937 * 119.99763 * 2 1 3 13 13 O 1.21284 * 119.99707 * 120.00162 * 12 2 1 14 14 N 1.34775 * 120.00226 * 299.99764 * 12 2 1 15 15 C 1.46495 * 119.99730 * 180.02562 * 14 12 2 16 16 C 1.53006 * 109.46780 * 180.02562 * 15 14 12 17 17 N 1.46903 * 109.46773 * 180.02562 * 16 15 14 18 18 C 1.47011 * 111.00005 * 293.62871 * 17 16 15 19 19 C 1.53103 * 109.25909 * 177.60983 * 18 17 16 20 20 O 1.43014 * 109.25672 * 56.85078 * 19 18 17 21 21 C 1.43009 * 113.73962 * 301.33063 * 20 19 18 22 22 C 1.47022 * 110.99986 * 169.99682 * 17 16 15 23 23 H 1.08996 * 109.47042 * 63.69316 * 1 2 3 24 24 H 1.08998 * 109.46954 * 183.69514 * 1 2 3 25 25 H 1.08999 * 109.46785 * 303.69291 * 1 2 3 26 26 H 0.96996 * 119.99653 * 180.02562 * 7 6 4 27 27 H 0.96999 * 119.99738 * 0.02562 * 14 12 2 28 28 H 1.08999 * 109.47257 * 60.00204 * 15 14 12 29 29 H 1.09005 * 109.47626 * 300.00030 * 15 14 12 30 30 H 1.08997 * 109.47614 * 60.00371 * 16 15 14 31 31 H 1.09000 * 109.46989 * 299.99763 * 16 15 14 32 32 H 1.08998 * 109.51435 * 297.54547 * 18 17 16 33 33 H 1.09007 * 109.50351 * 57.67921 * 18 17 16 34 34 H 1.09005 * 109.50732 * 296.91904 * 19 18 17 35 35 H 1.09000 * 109.54405 * 176.80869 * 19 18 17 36 36 H 1.09007 * 109.51032 * 298.73830 * 21 20 19 37 37 H 1.09003 * 109.54650 * 178.62777 * 21 20 19 38 38 H 1.09002 * 109.50431 * 302.32947 * 22 17 16 39 39 H 1.09006 * 109.50182 * 62.41126 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5786 -1.6371 -1.1338 6 6 1.7947 -0.1773 -2.4796 7 7 1.3012 1.0364 -2.5935 8 14 2.1736 -1.1791 -4.0101 9 1 1.0201 -2.0603 -4.3231 10 1 2.4211 -0.2631 -5.1525 11 1 3.3810 -2.0100 -3.7714 12 6 2.0323 -0.7104 1.2305 13 8 2.7296 -1.6965 1.1192 14 7 1.7068 -0.2499 2.4546 15 6 2.1956 -0.9402 3.6507 16 6 1.6850 -0.2193 4.9000 17 7 2.1756 -0.9111 6.0994 18 6 1.5854 -2.2528 6.2122 19 6 2.1676 -2.9591 7.4395 20 8 1.9255 -2.1617 8.6017 21 6 2.4870 -0.8486 8.5262 22 6 1.9081 -0.1209 7.3100 23 1 -0.3633 0.4554 -0.9212 24 1 -0.3633 -1.0255 0.0662 25 1 -0.3633 0.5701 0.8551 26 1 1.1337 1.4113 -3.4723 27 1 1.1488 0.5386 2.5436 28 1 3.2856 -0.9398 3.6505 29 1 1.8326 -1.9680 3.6510 30 1 0.5950 -0.2201 4.9000 31 1 2.0476 0.8086 4.9000 32 1 0.5042 -2.1670 6.3205 33 1 1.8175 -2.8290 5.3165 34 1 3.2413 -3.0930 7.3072 35 1 1.6916 -3.9323 7.5601 36 1 3.5700 -0.9210 8.4254 37 1 2.2421 -0.2945 9.4324 38 1 2.3757 0.8592 7.2155 39 1 0.8320 -0.0003 7.4354 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049820105.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:21:11 Heat of formation + Delta-G solvation = -84.345750 kcal Electronic energy + Delta-G solvation = -19145.037513 eV Core-core repulsion = 16087.476556 eV Total energy + Delta-G solvation = -3057.560956 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 256.157 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.85662 -38.73688 -36.40593 -33.90866 -33.66944 -31.48405 -30.77468 -29.30491 -26.20924 -25.09445 -24.31496 -22.86944 -21.61627 -20.64092 -19.35918 -16.81950 -16.49074 -16.29112 -15.97248 -15.63977 -15.31386 -15.21534 -14.75051 -14.42460 -14.20953 -13.75256 -13.38696 -12.77090 -12.57980 -12.43716 -12.14864 -11.70762 -11.66300 -11.53428 -11.09869 -11.01150 -10.87107 -10.76386 -10.62881 -10.28145 -9.96421 -9.92654 -9.02469 -8.67516 -8.53188 -8.43469 -8.34520 -6.05206 -4.03608 3.29744 3.35475 3.40684 3.47538 3.60786 3.75523 4.14660 4.49863 4.58125 4.69799 4.71502 4.87579 4.96023 5.10723 5.12307 5.26717 5.30319 5.34542 5.42957 5.50407 5.59852 5.69200 5.91730 6.02820 6.28398 6.53894 6.65631 6.67581 6.77716 6.86090 6.86449 7.09126 7.43839 7.64922 7.98220 8.10529 8.46148 9.05466 9.25622 9.60597 11.05480 Molecular weight = 256.16amu Principal moments of inertia in cm(-1) A = 0.053889 B = 0.003507 C = 0.003394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.464878 B = 7982.808697 C = 8246.681358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.027 3.973 3 H 0.059 0.941 4 C -0.503 4.503 5 H 0.074 0.926 6 C 0.060 3.940 7 N -0.895 5.895 8 Si 0.896 3.104 9 H -0.280 1.280 10 H -0.288 1.288 11 H -0.273 1.273 12 C 0.520 3.480 13 O -0.545 6.545 14 N -0.748 5.748 15 C 0.124 3.876 16 C 0.046 3.954 17 N -0.534 5.534 18 C 0.011 3.989 19 C 0.064 3.936 20 O -0.388 6.388 21 C 0.064 3.936 22 C 0.018 3.982 23 H 0.075 0.925 24 H 0.032 0.968 25 H 0.016 0.984 26 H 0.261 0.739 27 H 0.395 0.605 28 H 0.069 0.931 29 H 0.059 0.941 30 H 0.041 0.959 31 H 0.082 0.918 32 H 0.044 0.956 33 H 0.093 0.907 34 H 0.061 0.939 35 H 0.098 0.902 36 H 0.060 0.940 37 H 0.097 0.903 38 H 0.087 0.913 39 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.339 -0.818 20.124 20.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.006 3.994 3 H 0.077 0.923 4 C -0.542 4.542 5 H 0.092 0.908 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.724 3.276 9 H -0.206 1.206 10 H -0.214 1.214 11 H -0.198 1.198 12 C 0.310 3.690 13 O -0.420 6.420 14 N -0.403 5.403 15 C -0.001 4.001 16 C -0.082 4.082 17 N -0.259 5.259 18 C -0.117 4.117 19 C -0.013 4.013 20 O -0.307 6.307 21 C -0.013 4.013 22 C -0.110 4.110 23 H 0.094 0.906 24 H 0.051 0.949 25 H 0.035 0.965 26 H 0.070 0.930 27 H 0.228 0.772 28 H 0.087 0.913 29 H 0.077 0.923 30 H 0.060 0.940 31 H 0.101 0.899 32 H 0.062 0.938 33 H 0.112 0.888 34 H 0.080 0.920 35 H 0.117 0.883 36 H 0.079 0.921 37 H 0.115 0.885 38 H 0.106 0.894 39 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -0.459 -1.547 20.009 20.074 hybrid contribution -0.903 0.216 -0.991 1.358 sum -1.361 -1.331 19.018 19.113 Atomic orbital electron populations 1.21672 0.97002 0.99088 1.00601 1.18882 0.93619 0.97435 0.89442 0.92300 1.21104 1.35231 1.08704 0.89116 0.90793 1.24947 0.95305 0.94716 0.99109 1.69961 1.45610 1.13971 1.23875 0.86522 0.78929 0.80025 0.82093 1.20569 1.21396 1.19758 1.21951 0.78507 0.84247 0.84326 1.90534 1.37873 1.26907 1.86735 1.46231 1.55650 1.32780 1.05652 1.21082 0.99800 0.95898 0.83302 1.22292 0.97942 0.98527 0.89432 1.62093 1.58879 1.02822 1.02136 1.22910 0.97544 0.90967 1.00239 1.22688 1.00696 0.93963 0.83974 1.87972 1.77831 1.25317 1.39535 1.22658 0.97887 0.83429 0.97347 1.22795 0.99801 0.97902 0.90533 0.90599 0.94868 0.96477 0.92960 0.77203 0.91293 0.92325 0.94042 0.89935 0.93769 0.88832 0.92046 0.88349 0.92143 0.88481 0.89443 0.93876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.81 8.94 37.16 0.33 -2.48 16 2 C 0.03 0.68 2.50 -92.92 -0.23 0.45 16 3 H 0.06 1.53 8.09 -51.93 -0.42 1.11 16 4 C -0.50 -14.39 8.28 -34.44 -0.29 -14.67 16 5 H 0.07 2.24 6.79 -52.48 -0.36 1.88 16 6 C 0.06 1.69 5.17 -17.82 -0.09 1.60 16 7 N -0.90 -25.41 12.17 55.43 0.67 -24.73 16 8 Si 0.90 21.91 29.55 -169.99 -5.02 16.89 16 9 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 10 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 12 C 0.52 11.91 7.15 -10.98 -0.08 11.84 16 13 O -0.54 -14.41 15.47 5.55 0.09 -14.33 16 14 N -0.75 -12.87 5.46 -60.29 -0.33 -13.20 16 15 C 0.12 1.84 5.61 -4.04 -0.02 1.81 16 16 C 0.05 0.52 5.07 -3.82 -0.02 0.50 16 17 N -0.53 -5.72 4.73 -234.29 -1.11 -6.83 16 18 C 0.01 0.12 5.44 -3.71 -0.02 0.10 16 19 C 0.06 0.59 7.01 37.21 0.26 0.86 16 20 O -0.39 -4.09 10.83 -35.23 -0.38 -4.48 16 21 C 0.06 0.54 7.01 37.21 0.26 0.80 16 22 C 0.02 0.16 5.64 -3.71 -0.02 0.14 16 23 H 0.08 1.87 6.83 -51.93 -0.35 1.51 16 24 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.02 0.31 7.67 -51.93 -0.40 -0.09 16 26 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 27 H 0.39 5.77 7.96 -40.82 -0.32 5.44 16 28 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 29 H 0.06 0.91 6.52 -51.93 -0.34 0.58 16 30 H 0.04 0.45 8.12 -51.93 -0.42 0.03 16 31 H 0.08 0.85 8.04 -51.93 -0.42 0.43 16 32 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.09 1.00 6.38 -51.93 -0.33 0.67 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.09 0.66 8.09 -51.93 -0.42 0.24 16 39 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 315.26 15.07 4.75 4.75 Total: -1.00 -32.31 315.26 -7.55 -39.86 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -6.30 Total: 1.14 kcal Atomic # 6 Polarization: 0.85 SS G_CDS: 0.08 Total: 0.93 kcal Atomic # 7 Polarization: -44.00 SS G_CDS: -0.76 Total: -44.76 kcal Atomic # 8 Polarization: -18.51 SS G_CDS: -0.30 Total: -18.80 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.31 -7.55 -39.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049820105.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.490 kcal (2) G-P(sol) polarization free energy of solvation -32.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds