Wall clock time and date at job start Mon Mar 30 2020 21:21:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34642 * 117.00412 * 2 1 4 4 O 1.21514 * 119.99656 * 359.97438 * 3 2 1 5 5 N 1.34777 * 120.00317 * 179.97438 * 3 2 1 6 6 C 1.46919 * 120.63056 * 180.02562 * 5 3 2 7 7 C 1.53192 * 108.77621 * 233.63351 * 6 5 3 8 8 C 1.53043 * 109.31176 * 305.36222 * 7 6 5 9 9 N 1.46899 * 109.45967 * 181.38658 * 8 7 6 10 10 C 1.46904 * 110.99846 * 155.00145 * 9 8 7 11 11 H 1.09005 * 109.47078 * 34.99919 * 10 9 8 12 12 C 1.53000 * 109.47015 * 275.00091 * 10 9 8 13 13 C 1.50696 * 109.46794 * 154.99634 * 10 9 8 14 14 H 1.07999 * 120.00319 * 0.02562 * 13 10 9 15 15 C 1.37885 * 119.99717 * 179.97438 * 13 10 9 16 16 N 1.31516 * 119.99913 * 180.02562 * 15 13 10 17 17 Si 1.86798 * 119.99766 * 0.02562 * 15 13 10 18 18 H 1.48500 * 109.47353 * 269.99586 * 17 15 13 19 19 H 1.48501 * 109.47293 * 30.00037 * 17 15 13 20 20 H 1.48504 * 109.46680 * 149.99835 * 17 15 13 21 21 C 1.53039 * 109.53537 * 61.36788 * 8 7 6 22 22 C 1.46919 * 120.63007 * 0.02562 * 5 3 2 23 23 H 1.09001 * 109.47201 * 299.99832 * 1 2 3 24 24 H 1.09009 * 109.46954 * 59.99936 * 1 2 3 25 25 H 1.08998 * 109.47241 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.58882 * 113.84521 * 6 5 3 27 27 H 1.09006 * 109.70352 * 353.48693 * 6 5 3 28 28 H 1.09001 * 109.49596 * 185.41280 * 7 6 5 29 29 H 1.08995 * 109.49666 * 65.31621 * 7 6 5 30 30 H 1.09001 * 109.45842 * 301.36521 * 8 7 6 31 31 H 1.00894 * 111.00040 * 31.04899 * 9 8 7 32 32 H 1.08998 * 109.46637 * 179.97438 * 12 10 9 33 33 H 1.08997 * 109.46749 * 299.99841 * 12 10 9 34 34 H 1.08996 * 109.47024 * 59.99984 * 12 10 9 35 35 H 0.97001 * 119.99646 * 179.97438 * 16 15 13 36 36 H 1.08998 * 109.50235 * 58.58434 * 21 8 7 37 37 H 1.09001 * 109.49999 * 178.68611 * 21 8 7 38 38 H 1.09005 * 109.58978 * 246.15714 * 22 5 3 39 39 H 1.09001 * 109.58744 * 6.44039 * 22 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4015 2.2187 -0.0005 5 7 3.4092 1.2701 0.0005 6 6 4.0906 2.5718 0.0011 7 6 5.0817 2.6100 -1.1664 8 6 6.0235 1.4076 -1.0705 9 7 6.9964 1.4590 -2.1699 10 6 8.2256 0.7349 -1.8193 11 1 7.9751 -0.1302 -1.2053 12 6 9.1585 1.6621 -1.0377 13 6 8.9139 0.2749 -3.0785 14 1 8.4818 0.4984 -4.0427 15 6 10.0960 -0.4306 -2.9996 16 7 10.6970 -0.8317 -4.0985 17 14 10.8437 -0.8166 -1.3319 18 1 11.7613 0.2814 -0.9347 19 1 9.7622 -0.9474 -0.3228 20 1 11.6023 -2.0907 -1.4126 21 6 5.2125 0.1133 -1.1675 22 6 4.2229 0.0468 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8901 25 1 -0.3633 -1.0276 -0.0005 26 1 4.6275 2.7028 0.9406 27 1 3.3578 3.3703 -0.1154 28 1 5.6622 3.5314 -1.1207 29 1 4.5354 2.5701 -2.1088 30 1 6.5510 1.4347 -0.1170 31 1 7.1999 2.4129 -2.4283 32 1 10.0702 1.1246 -0.7772 33 1 9.4089 2.5272 -1.6517 34 1 8.6605 1.9948 -0.1270 35 1 11.5288 -1.3276 -4.0430 36 1 4.6650 0.0968 -2.1099 37 1 5.8862 -0.7424 -1.1226 38 1 4.7706 -0.0278 0.9400 39 1 3.5756 -0.8225 -0.1151 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068614158.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:21:33 Heat of formation + Delta-G solvation = -72.139874 kcal Electronic energy + Delta-G solvation = -19774.311783 eV Core-core repulsion = 16717.280114 eV Total energy + Delta-G solvation = -3057.031670 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 256.157 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.68156 -38.55040 -36.55096 -35.65364 -33.01874 -31.43628 -31.01590 -28.57531 -27.42294 -25.13955 -24.03137 -23.38199 -21.31537 -20.00959 -19.74401 -18.11523 -17.15952 -16.68564 -16.54119 -15.09456 -14.98629 -14.83658 -14.42735 -14.13959 -13.95362 -13.58371 -13.09406 -12.81278 -12.73451 -12.41669 -12.21583 -12.19440 -11.92431 -11.36431 -11.24960 -11.18125 -10.89198 -10.74380 -10.67167 -10.36692 -10.16288 -10.04243 -9.52151 -9.14486 -8.81502 -8.58147 -7.46988 -6.05411 -4.02758 2.08655 2.74108 3.23838 3.32925 3.36791 3.81992 4.38858 4.72308 4.87330 4.91004 5.00063 5.05413 5.11849 5.24713 5.28700 5.31414 5.43529 5.55683 5.71677 5.79407 5.81003 5.94217 6.04069 6.17112 6.20200 6.26888 6.32233 6.45627 6.52680 6.59706 6.76003 7.09271 7.26276 7.70735 7.90467 8.19071 8.30530 8.68689 9.06428 9.57231 11.08230 Molecular weight = 256.16amu Principal moments of inertia in cm(-1) A = 0.038446 B = 0.004554 C = 0.004403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.121722 B = 6146.975937 C = 6357.200068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 O -0.370 6.370 3 C 0.649 3.351 4 O -0.580 6.580 5 N -0.589 5.589 6 C 0.131 3.869 7 C -0.136 4.136 8 C 0.085 3.915 9 N -0.668 5.668 10 C 0.183 3.817 11 H 0.034 0.966 12 C -0.183 4.183 13 C -0.498 4.498 14 H 0.081 0.919 15 C 0.067 3.933 16 N -0.901 5.901 17 Si 0.886 3.114 18 H -0.281 1.281 19 H -0.270 1.270 20 H -0.297 1.297 21 C -0.122 4.122 22 C 0.111 3.889 23 H 0.061 0.939 24 H 0.062 0.938 25 H 0.101 0.899 26 H 0.070 0.930 27 H 0.095 0.905 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.038 0.962 31 H 0.332 0.668 32 H 0.044 0.956 33 H 0.054 0.946 34 H 0.025 0.975 35 H 0.263 0.737 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.068 0.932 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.473 2.998 10.679 19.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 O -0.284 6.284 3 C 0.404 3.596 4 O -0.470 6.470 5 N -0.329 5.329 6 C 0.009 3.991 7 C -0.175 4.175 8 C -0.025 4.025 9 N -0.298 5.298 10 C 0.074 3.926 11 H 0.052 0.948 12 C -0.242 4.242 13 C -0.536 4.536 14 H 0.099 0.901 15 C -0.134 4.134 16 N -0.540 5.540 17 Si 0.717 3.283 18 H -0.208 1.208 19 H -0.195 1.195 20 H -0.225 1.225 21 C -0.161 4.161 22 C -0.012 4.012 23 H 0.079 0.921 24 H 0.081 0.919 25 H 0.119 0.881 26 H 0.088 0.912 27 H 0.113 0.887 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.056 0.944 31 H 0.150 0.850 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.044 0.956 35 H 0.073 0.927 36 H 0.092 0.908 37 H 0.100 0.900 38 H 0.086 0.914 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -15.862 2.635 10.258 19.072 hybrid contribution 0.993 0.377 1.510 1.846 sum -14.869 3.011 11.768 19.200 Atomic orbital electron populations 1.23166 0.74734 1.03326 1.02567 1.86248 1.23898 1.31124 1.87104 1.18035 0.83254 0.82037 0.76299 1.90965 1.64349 1.34953 1.56747 1.46980 1.01761 1.08954 1.75244 1.21644 0.95152 0.83507 0.98815 1.22151 0.97536 0.98838 0.98953 1.21442 0.93036 0.93876 0.94188 1.60622 1.13296 1.19225 1.36644 1.19674 0.85404 0.91724 0.95797 0.94811 1.22864 1.00930 1.01475 0.98884 1.20987 1.05806 1.33884 0.92945 0.90077 1.24950 0.96828 0.95617 0.96043 1.69887 1.18195 1.38820 1.27093 0.86897 0.79418 0.76765 0.85216 1.20847 1.19530 1.22460 1.21948 0.97294 0.99057 0.97780 1.21876 0.93805 0.85968 0.99534 0.92053 0.91920 0.88076 0.91167 0.88706 0.90545 0.90514 0.94437 0.84963 0.93701 0.92737 0.95566 0.92707 0.90783 0.89974 0.91351 0.89040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.49 10.56 101.05 1.07 1.56 16 2 O -0.37 -4.55 9.20 -40.33 -0.37 -4.92 16 3 C 0.65 9.25 8.43 54.06 0.46 9.71 16 4 O -0.58 -9.56 15.55 -19.28 -0.30 -9.86 16 5 N -0.59 -7.69 2.97 -178.54 -0.53 -8.23 16 6 C 0.13 1.56 6.43 -3.71 -0.02 1.54 16 7 C -0.14 -1.73 5.36 -26.61 -0.14 -1.87 16 8 C 0.09 1.30 2.27 -67.67 -0.15 1.15 16 9 N -0.67 -12.73 6.04 -100.91 -0.61 -13.34 16 10 C 0.18 4.12 1.97 -68.86 -0.14 3.98 16 11 H 0.03 0.79 6.16 -51.93 -0.32 0.47 16 12 C -0.18 -3.78 8.63 37.16 0.32 -3.46 16 13 C -0.50 -13.73 9.42 -34.44 -0.32 -14.05 16 14 H 0.08 2.48 8.06 -52.49 -0.42 2.06 16 15 C 0.07 1.90 5.45 -17.82 -0.10 1.80 16 16 N -0.90 -27.38 13.96 55.43 0.77 -26.61 16 17 Si 0.89 21.56 24.37 -169.99 -4.14 17.41 16 18 H -0.28 -6.70 6.87 56.52 0.39 -6.31 16 19 H -0.27 -6.24 6.53 56.52 0.37 -5.87 16 20 H -0.30 -7.28 7.11 56.52 0.40 -6.88 16 21 C -0.12 -1.79 5.57 -26.59 -0.15 -1.94 16 22 C 0.11 1.35 6.45 -3.69 -0.02 1.33 16 23 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 25 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.09 1.16 7.01 -51.93 -0.36 0.80 16 28 H 0.08 0.87 8.10 -51.93 -0.42 0.45 16 29 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 30 H 0.04 0.58 7.11 -51.93 -0.37 0.21 16 31 H 0.33 5.99 8.07 -39.29 -0.32 5.67 16 32 H 0.04 0.99 3.27 -51.93 -0.17 0.82 16 33 H 0.05 1.10 8.13 -51.93 -0.42 0.67 16 34 H 0.03 0.46 7.42 -51.93 -0.39 0.07 16 35 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 36 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 37 H 0.08 1.32 7.41 -51.93 -0.38 0.93 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.09 1.04 6.93 -51.93 -0.36 0.68 16 LS Contribution 306.10 15.07 4.61 4.61 Total: -1.00 -31.98 306.10 -5.85 -37.83 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -6.08 Total: 3.36 kcal Atomic # 6 Polarization: -1.06 SS G_CDS: 0.79 Total: -0.27 kcal Atomic # 7 Polarization: -47.80 SS G_CDS: -0.37 Total: -48.17 kcal Atomic # 8 Polarization: -14.11 SS G_CDS: -0.67 Total: -14.78 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.14 Total: 17.41 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -31.98 -5.85 -37.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068614158.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.307 kcal (2) G-P(sol) polarization free energy of solvation -31.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds