Wall clock time and date at job start Mon Mar 30 2020 21:22:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46495 * 109.46920 * 2 1 4 4 C 1.46507 * 120.00213 * 95.02329 * 3 2 1 5 5 C 1.50697 * 109.46922 * 276.31962 * 4 3 2 6 6 H 1.08002 * 120.00015 * 359.97438 * 5 4 3 7 7 C 1.37878 * 119.99748 * 179.97438 * 5 4 3 8 8 N 1.31513 * 120.00172 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00099 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47188 * 180.02562 * 9 7 5 11 11 H 1.48495 * 109.47080 * 59.99612 * 9 7 5 12 12 H 1.48512 * 109.46923 * 300.00245 * 9 7 5 13 13 C 1.34776 * 119.99906 * 275.02274 * 3 2 1 14 14 O 1.21276 * 120.00164 * 3.88495 * 13 3 2 15 15 C 1.50700 * 120.00028 * 183.87983 * 13 3 2 16 16 C 1.52995 * 110.80777 * 300.17818 * 15 13 3 17 17 C 1.55000 * 110.90469 * 63.80601 * 15 13 3 18 18 O 1.44379 * 103.49126 * 81.17596 * 17 15 13 19 19 C 1.43741 * 106.97564 * 40.05777 * 18 17 15 20 20 C 1.54188 * 107.30498 * 333.49500 * 19 18 17 21 21 H 1.08998 * 110.50933 * 120.67900 * 20 19 18 22 22 N 1.46904 * 110.51574 * 243.35854 * 20 19 18 23 23 H 1.08996 * 109.47558 * 304.92621 * 1 2 3 24 24 H 1.08994 * 109.46911 * 64.93121 * 1 2 3 25 25 H 1.09011 * 109.46573 * 184.92286 * 1 2 3 26 26 H 1.08997 * 109.47479 * 239.99401 * 2 1 3 27 27 H 1.09002 * 109.46943 * 119.99915 * 2 1 3 28 28 H 1.08994 * 109.46785 * 156.31778 * 4 3 2 29 29 H 1.08993 * 109.46869 * 36.31734 * 4 3 2 30 30 H 0.96998 * 119.99910 * 0.02562 * 8 7 5 31 31 H 1.09001 * 109.47096 * 68.03061 * 16 15 13 32 32 H 1.09000 * 109.47300 * 188.02998 * 16 15 13 33 33 H 1.09002 * 109.46876 * 308.03049 * 16 15 13 34 34 H 1.09003 * 110.61953 * 199.67269 * 17 15 13 35 35 H 1.08997 * 110.61524 * 322.67186 * 17 15 13 36 36 H 1.09000 * 109.88122 * 92.91545 * 19 18 17 37 37 H 1.09005 * 109.87628 * 213.91382 * 19 18 17 38 38 H 1.00901 * 110.99835 * 279.02892 * 22 20 19 39 39 H 1.00900 * 111.00218 * 42.97961 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3672 2.0349 1.2639 5 6 1.1218 2.5978 1.8987 6 1 0.1661 2.4809 1.4095 7 6 1.2025 3.2623 3.1042 8 7 2.3664 3.4052 3.6996 9 14 -0.3411 3.9608 3.8909 10 1 0.0126 4.6233 5.1720 11 1 -1.3050 2.8616 4.1509 12 1 -0.9579 4.9535 2.9745 13 6 2.1465 2.0506 -1.1627 14 8 1.7917 1.5351 -2.2015 15 6 2.7308 3.4397 -1.1720 16 6 1.8925 4.3876 -0.3120 17 6 4.2065 3.4222 -0.6982 18 8 4.9344 3.0203 -1.8785 19 6 4.3289 3.6938 -2.9947 20 6 2.8602 3.9750 -2.6188 21 1 2.6565 5.0454 -2.6492 22 7 1.9511 3.2516 -3.5179 23 1 -0.3634 0.5883 0.8425 24 1 -0.3633 0.4354 -0.9308 25 1 -0.3633 -1.0240 0.0882 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.0742 2.8420 1.0723 29 1 2.8205 1.3067 1.9364 30 1 3.1681 3.0434 3.2906 31 1 1.9860 4.1054 0.7366 32 1 2.2471 5.4095 -0.4463 33 1 0.8470 4.3232 -0.6138 34 1 4.5177 4.4156 -0.3751 35 1 4.3437 2.6962 0.1032 36 1 4.8482 4.6325 -3.1874 37 1 4.3723 3.0581 -3.8791 38 1 1.8351 3.7465 -4.3895 39 1 2.2743 2.3092 -3.6773 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085394591.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:22:13 Heat of formation + Delta-G solvation = -49.419226 kcal Electronic energy + Delta-G solvation = -21296.994597 eV Core-core repulsion = 18240.948168 eV Total energy + Delta-G solvation = -3056.046429 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 256.157 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.56623 -37.97838 -35.63799 -34.03390 -32.92868 -32.29534 -29.73248 -27.31894 -26.85303 -25.65177 -23.63991 -22.89712 -22.00840 -20.75078 -18.45780 -17.16918 -16.46495 -15.93728 -15.58654 -15.30157 -14.89460 -14.36012 -14.16677 -13.80105 -13.26024 -13.12709 -12.85819 -12.69900 -12.34248 -12.08865 -11.95227 -11.71536 -11.61255 -11.32277 -11.10602 -10.79551 -10.78237 -10.62551 -10.29142 -10.16436 -9.85624 -9.66031 -9.23062 -8.66453 -8.47437 -8.06972 -7.64317 -6.53432 -4.27816 3.35295 3.35618 3.40619 3.55030 3.88684 4.14997 4.39605 4.66516 4.84666 5.06474 5.16349 5.24351 5.28581 5.47289 5.64109 5.74074 5.81688 5.84369 5.94055 5.99543 6.03129 6.12780 6.26007 6.41664 6.52152 6.59151 6.61676 6.72203 6.92869 6.99659 7.26205 7.38796 7.63895 7.83231 7.98264 8.22018 8.44890 8.63725 9.07797 9.39079 10.81109 Molecular weight = 256.16amu Principal moments of inertia in cm(-1) A = 0.022023 B = 0.008540 C = 0.007465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.106974 B = 3277.802140 C = 3749.958296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.125 3.875 3 N -0.593 5.593 4 C 0.213 3.787 5 C -0.606 4.606 6 H 0.060 0.940 7 C 0.024 3.976 8 N -0.903 5.903 9 Si 1.064 2.936 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.286 1.286 13 C 0.545 3.455 14 O -0.543 6.543 15 C -0.097 4.097 16 C -0.154 4.154 17 C 0.050 3.950 18 O -0.378 6.378 19 C 0.014 3.986 20 C 0.078 3.922 21 H 0.090 0.910 22 N -0.816 5.816 23 H 0.070 0.930 24 H 0.053 0.947 25 H 0.048 0.952 26 H 0.063 0.937 27 H 0.068 0.932 28 H 0.042 0.958 29 H 0.020 0.980 30 H 0.268 0.732 31 H 0.124 0.876 32 H 0.045 0.955 33 H 0.058 0.942 34 H 0.070 0.930 35 H 0.106 0.894 36 H 0.054 0.946 37 H 0.077 0.923 38 H 0.313 0.687 39 H 0.366 0.634 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.675 0.456 -8.490 8.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.002 3.998 3 N -0.324 5.324 4 C 0.092 3.908 5 C -0.644 4.644 6 H 0.078 0.922 7 C -0.182 4.182 8 N -0.539 5.539 9 Si 0.892 3.108 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.212 1.212 13 C 0.332 3.668 14 O -0.421 6.421 15 C -0.101 4.101 16 C -0.210 4.210 17 C -0.026 4.026 18 O -0.296 6.296 19 C -0.065 4.065 20 C -0.036 4.036 21 H 0.108 0.892 22 N -0.358 5.358 23 H 0.089 0.911 24 H 0.072 0.928 25 H 0.067 0.933 26 H 0.081 0.919 27 H 0.086 0.914 28 H 0.059 0.941 29 H 0.038 0.962 30 H 0.078 0.922 31 H 0.142 0.858 32 H 0.064 0.936 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.124 0.876 36 H 0.073 0.927 37 H 0.095 0.905 38 H 0.125 0.875 39 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 0.577 0.895 -7.131 7.210 hybrid contribution 1.143 -0.622 -1.860 2.270 sum 1.719 0.273 -8.991 9.158 Atomic orbital electron populations 1.22134 0.96387 1.00809 1.02971 1.21140 0.94583 0.83084 1.00985 1.48005 1.63655 1.13125 1.07580 1.19907 0.97218 0.93094 0.80549 1.22286 0.94486 1.39424 1.08227 0.92199 1.25768 1.02958 0.95183 0.94255 1.70847 0.98960 1.43443 1.40628 0.83591 0.74240 0.76558 0.76456 1.20687 1.21360 1.21189 1.19820 0.77773 0.86082 0.83087 1.90240 1.51617 1.68815 1.31448 1.22182 0.96471 0.95333 0.96079 1.22325 0.98836 0.95822 1.04045 1.23978 0.88415 1.01466 0.88752 1.88856 1.56014 1.68772 1.15986 1.24185 0.94828 0.96858 0.90659 1.22765 0.89562 0.98503 0.92753 0.89211 1.59438 1.52080 1.07540 1.16755 0.91054 0.92802 0.93258 0.91907 0.91365 0.94064 0.96159 0.92157 0.85793 0.93615 0.92271 0.91230 0.87600 0.92745 0.90493 0.87500 0.80663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.02 10.20 37.16 0.38 -2.64 16 2 C 0.13 2.38 6.08 -4.04 -0.02 2.35 16 3 N -0.59 -12.42 2.46 -175.07 -0.43 -12.85 16 4 C 0.21 4.77 3.38 -5.19 -0.02 4.75 16 5 C -0.61 -14.88 6.54 -34.44 -0.23 -15.11 16 6 H 0.06 1.54 6.64 -52.49 -0.35 1.19 16 7 C 0.02 0.60 5.33 -17.82 -0.09 0.51 16 8 N -0.90 -24.32 13.65 55.43 0.76 -23.56 16 9 Si 1.06 23.30 29.90 -169.99 -5.08 18.22 16 10 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 11 H -0.29 -6.13 7.11 56.52 0.40 -5.73 16 12 H -0.29 -6.05 7.11 56.52 0.40 -5.65 16 13 C 0.54 11.34 6.44 -10.99 -0.07 11.27 16 14 O -0.54 -11.77 12.06 5.56 0.07 -11.70 16 15 C -0.10 -1.79 0.57 -153.65 -0.09 -1.87 16 16 C -0.15 -2.96 7.71 37.15 0.29 -2.67 16 17 C 0.05 0.89 5.74 38.21 0.22 1.11 16 18 O -0.38 -6.72 11.50 -35.23 -0.41 -7.12 16 19 C 0.01 0.21 7.39 37.78 0.28 0.49 16 20 C 0.08 1.24 3.70 -66.13 -0.24 1.00 16 21 H 0.09 1.29 7.74 -51.93 -0.40 0.89 16 22 N -0.82 -13.25 7.70 -3.33 -0.03 -13.28 16 23 H 0.07 1.44 6.54 -51.93 -0.34 1.10 16 24 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 25 H 0.05 0.76 8.14 -51.92 -0.42 0.34 16 26 H 0.06 1.16 7.64 -51.93 -0.40 0.76 16 27 H 0.07 1.22 7.90 -51.93 -0.41 0.81 16 28 H 0.04 0.92 3.05 -51.93 -0.16 0.76 16 29 H 0.02 0.48 7.83 -51.93 -0.41 0.08 16 30 H 0.27 7.09 7.22 -40.82 -0.29 6.80 16 31 H 0.12 2.72 3.43 -51.93 -0.18 2.54 16 32 H 0.04 0.76 7.96 -51.93 -0.41 0.35 16 33 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.07 1.11 8.05 -51.93 -0.42 0.69 16 35 H 0.11 1.97 5.79 -51.93 -0.30 1.67 16 36 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.08 1.08 7.76 -51.93 -0.40 0.67 16 38 H 0.31 4.13 9.08 -39.29 -0.36 3.77 16 39 H 0.37 6.44 5.96 -40.43 -0.24 6.20 16 LS Contribution 296.84 15.07 4.47 4.47 Total: -1.00 -27.74 296.84 -5.80 -33.54 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: -5.55 Total: 13.09 kcal Atomic # 6 Polarization: -1.21 SS G_CDS: 0.40 Total: -0.81 kcal Atomic # 7 Polarization: -49.99 SS G_CDS: 0.30 Total: -49.69 kcal Atomic # 8 Polarization: -18.48 SS G_CDS: -0.34 Total: -18.82 kcal Atomic # 14 Polarization: 23.30 SS G_CDS: -5.08 Total: 18.22 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -27.74 -5.80 -33.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085394591.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.875 kcal (2) G-P(sol) polarization free energy of solvation -27.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds