Wall clock time and date at job start Mon Mar 30 2020 21:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47100 * 2 1 4 4 H 1.08999 * 109.47721 * 54.83025 * 3 2 1 5 5 C 1.50705 * 109.47430 * 174.83301 * 3 2 1 6 6 H 1.08000 * 120.00343 * 119.99257 * 5 3 2 7 7 C 1.37873 * 119.99791 * 300.00381 * 5 3 2 8 8 N 1.31516 * 119.99845 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 120.00186 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.46657 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47475 * 119.99316 * 9 7 5 12 12 H 1.48502 * 109.46696 * 239.99612 * 9 7 5 13 13 N 1.46906 * 109.46970 * 294.83258 * 3 2 1 14 14 C 1.46900 * 110.99856 * 153.83137 * 13 3 2 15 15 C 1.53004 * 109.46890 * 175.30407 * 14 13 3 16 16 H 1.08996 * 110.57628 * 61.25091 * 15 14 13 17 17 C 1.54092 * 110.51927 * 183.95824 * 15 14 13 18 18 N 1.47096 * 103.77646 * 118.63154 * 17 15 14 19 19 C 1.46498 * 125.55781 * 180.26362 * 18 17 15 20 20 C 1.52997 * 109.47017 * 269.71294 * 19 18 17 21 21 C 1.34004 * 108.88107 * 359.97438 * 18 17 15 22 22 O 1.21512 * 123.06977 * 180.02562 * 21 18 17 23 23 O 1.33770 * 113.85824 * 0.02562 * 21 18 17 24 24 H 1.09002 * 109.47034 * 186.24208 * 1 2 3 25 25 H 1.09000 * 109.46880 * 306.23220 * 1 2 3 26 26 H 1.08996 * 109.47393 * 66.23883 * 1 2 3 27 27 H 1.09003 * 109.47136 * 239.99580 * 2 1 3 28 28 H 1.09004 * 109.47249 * 119.99817 * 2 1 3 29 29 H 0.97007 * 120.00019 * 180.02562 * 8 7 5 30 30 H 1.00897 * 110.99950 * 29.87352 * 13 3 2 31 31 H 1.08999 * 109.47095 * 55.30448 * 14 13 3 32 32 H 1.08996 * 109.46910 * 295.29743 * 14 13 3 33 33 H 1.08997 * 110.56508 * 0.05627 * 17 15 14 34 34 H 1.08999 * 110.56257 * 237.20136 * 17 15 14 35 35 H 1.09004 * 109.47282 * 29.71263 * 19 18 17 36 36 H 1.08999 * 109.47204 * 149.71540 * 19 18 17 37 37 H 1.09002 * 109.47247 * 179.97438 * 20 19 18 38 38 H 1.08996 * 109.47668 * 300.00676 * 20 19 18 39 39 H 1.08999 * 109.46933 * 60.00079 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6031 1.9824 0.8400 5 6 3.5416 1.4445 0.1280 6 1 4.1491 1.8882 -0.6470 7 6 4.1399 0.8796 1.2342 8 7 3.4002 0.3395 2.1780 9 14 6.0011 0.8827 1.3933 10 1 6.5981 1.5466 0.2067 11 1 6.3918 1.6194 2.6221 12 1 6.4930 -0.5160 1.4772 13 7 1.6548 2.0980 -1.2570 14 6 1.5485 3.5525 -1.0811 15 6 1.2617 4.2100 -2.4325 16 1 0.3163 3.8518 -2.8398 17 6 1.2432 5.7446 -2.2935 18 7 2.3347 6.1892 -3.1737 19 6 2.7388 7.5800 -3.3938 20 6 1.9578 8.1570 -4.5761 21 6 2.9031 5.1141 -3.7366 22 8 3.8355 5.1868 -4.5124 23 8 2.3504 3.9536 -3.3663 24 1 -0.3633 -1.0216 0.1117 25 1 -0.3633 0.6074 0.8290 26 1 -0.3634 0.4141 -0.9405 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.8211 -0.0576 2.9566 30 1 0.7941 1.7133 -1.6164 31 1 2.4854 3.9395 -0.6803 32 1 0.7371 3.7764 -0.3887 33 1 1.4393 6.0380 -1.2623 34 1 0.2893 6.1482 -2.6328 35 1 2.5282 8.1655 -2.4988 36 1 3.8064 7.6183 -3.6102 37 1 2.2582 9.1920 -4.7396 38 1 2.1683 7.5716 -5.4711 39 1 0.8902 8.1188 -4.3598 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000846979999.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:19:42 Heat of formation + Delta-G solvation = -73.707706 kcal Electronic energy + Delta-G solvation = -19718.053075 eV Core-core repulsion = 16660.953419 eV Total energy + Delta-G solvation = -3057.099656 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 256.157 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.34983 -37.29538 -36.15109 -35.82463 -32.89345 -31.71567 -31.12775 -29.08333 -26.63806 -24.65602 -23.87922 -22.71374 -21.91451 -20.36544 -19.58177 -17.47189 -16.76185 -16.29208 -16.24111 -15.19702 -14.91444 -14.54630 -14.33218 -13.88950 -13.77696 -13.58967 -13.24340 -12.72246 -12.60584 -12.40736 -12.17747 -11.98520 -11.77805 -11.32707 -11.30269 -11.13044 -10.85060 -10.59184 -10.37448 -10.30462 -9.95737 -9.70175 -9.61307 -9.08940 -8.92561 -8.34610 -7.28383 -5.96782 -4.00264 2.59007 2.98194 3.33318 3.41595 3.49802 3.67489 4.18154 4.47798 4.57009 4.66445 5.02182 5.06068 5.13489 5.19018 5.32038 5.42124 5.43203 5.50465 5.59103 5.92682 5.94695 5.99938 6.11561 6.12689 6.32444 6.38950 6.48705 6.80510 7.02742 7.14009 7.41796 7.60085 7.75944 7.92638 8.22181 8.25060 8.37173 8.70728 9.09395 9.65279 11.08603 Molecular weight = 256.16amu Principal moments of inertia in cm(-1) A = 0.021677 B = 0.005598 C = 0.004822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.390929 B = 5000.778902 C = 5805.868133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.127 4.127 3 C 0.220 3.780 4 H 0.003 0.997 5 C -0.492 4.492 6 H 0.063 0.937 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.893 3.107 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.284 1.284 13 N -0.678 5.678 14 C 0.060 3.940 15 C 0.075 3.925 16 H 0.108 0.892 17 C 0.072 3.928 18 N -0.636 5.636 19 C 0.143 3.857 20 C -0.171 4.171 21 C 0.640 3.360 22 O -0.532 6.532 23 O -0.296 6.296 24 H 0.038 0.962 25 H 0.042 0.958 26 H 0.035 0.965 27 H 0.043 0.957 28 H 0.100 0.900 29 H 0.258 0.742 30 H 0.318 0.682 31 H 0.085 0.915 32 H 0.040 0.960 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.069 0.931 38 H 0.061 0.939 39 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.776 12.811 -6.505 16.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.165 4.165 3 C 0.113 3.887 4 H 0.020 0.980 5 C -0.531 4.531 6 H 0.081 0.919 7 C -0.145 4.145 8 N -0.538 5.538 9 Si 0.721 3.279 10 H -0.197 1.197 11 H -0.213 1.213 12 H -0.211 1.211 13 N -0.310 5.310 14 C -0.070 4.070 15 C 0.018 3.982 16 H 0.125 0.875 17 C -0.052 4.052 18 N -0.385 5.385 19 C 0.022 3.978 20 C -0.229 4.229 21 C 0.395 3.605 22 O -0.417 6.417 23 O -0.205 6.205 24 H 0.057 0.943 25 H 0.061 0.939 26 H 0.054 0.946 27 H 0.061 0.939 28 H 0.118 0.882 29 H 0.068 0.932 30 H 0.136 0.864 31 H 0.103 0.897 32 H 0.058 0.942 33 H 0.111 0.889 34 H 0.105 0.895 35 H 0.100 0.900 36 H 0.104 0.896 37 H 0.088 0.912 38 H 0.080 0.920 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.546 12.534 -7.035 16.233 hybrid contribution -0.027 0.102 0.840 0.846 sum -7.572 12.636 -6.195 15.981 Atomic orbital electron populations 1.21884 0.99597 0.99840 0.99410 1.21777 0.91195 1.00246 1.03287 1.19182 0.95636 0.90043 0.83855 0.97992 1.21281 0.91205 1.36224 1.04359 0.91882 1.24942 0.98147 0.95588 0.95814 1.69881 1.34637 1.39610 1.09669 0.86512 0.85848 0.77690 0.77856 1.19671 1.21268 1.21067 1.60602 1.36320 1.00604 1.33452 1.22171 1.01723 0.91928 0.91179 1.24000 0.89661 0.92977 0.91521 0.87471 1.22837 0.91661 0.94257 0.96493 1.48131 1.35680 1.06873 1.47810 1.21208 1.00176 0.77885 0.98534 1.22193 1.00548 1.01133 0.99058 1.18713 0.81920 0.79766 0.80092 1.90992 1.28188 1.85065 1.37496 1.87490 1.46978 1.27511 1.58511 0.94314 0.93933 0.94612 0.93861 0.88159 0.93171 0.86450 0.89701 0.94169 0.88924 0.89483 0.89984 0.89578 0.91242 0.92036 0.92478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.76 9.63 37.16 0.36 -2.40 16 2 C -0.13 -2.92 5.35 -26.73 -0.14 -3.06 16 3 C 0.22 5.32 2.03 -68.86 -0.14 5.18 16 4 H 0.00 0.06 7.84 -51.93 -0.41 -0.34 16 5 C -0.49 -13.64 8.60 -34.44 -0.30 -13.93 16 6 H 0.06 1.84 7.81 -52.49 -0.41 1.43 16 7 C 0.06 1.53 5.29 -17.82 -0.09 1.44 16 8 N -0.90 -25.34 11.29 55.43 0.63 -24.72 16 9 Si 0.89 21.90 29.54 -169.99 -5.02 16.87 16 10 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 13 N -0.68 -13.83 6.20 -107.95 -0.67 -14.50 16 14 C 0.06 1.01 5.01 -3.82 -0.02 0.99 16 15 C 0.07 1.02 4.11 -26.16 -0.11 0.91 16 16 H 0.11 1.18 8.14 -51.93 -0.42 0.76 16 17 C 0.07 0.74 7.34 -3.15 -0.02 0.71 16 18 N -0.64 -8.25 2.96 -178.84 -0.53 -8.78 16 19 C 0.14 1.41 6.73 -4.04 -0.03 1.38 16 20 C -0.17 -1.42 10.24 37.16 0.38 -1.04 16 21 C 0.64 11.47 8.85 53.71 0.48 11.94 16 22 O -0.53 -11.35 17.55 -19.12 -0.34 -11.68 16 23 O -0.30 -5.47 10.72 -37.83 -0.41 -5.88 16 24 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 26 H 0.03 0.58 6.65 -51.93 -0.35 0.23 16 27 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.10 2.62 5.95 -51.93 -0.31 2.31 16 29 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 30 H 0.32 5.77 6.62 -39.29 -0.26 5.51 16 31 H 0.08 1.64 7.97 -51.93 -0.41 1.23 16 32 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.09 0.85 7.73 -51.93 -0.40 0.45 16 34 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.09 0.95 7.93 -51.93 -0.41 0.54 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 320.98 15.07 4.84 4.84 Total: -1.00 -32.97 320.98 -7.46 -40.43 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -6.32 Total: 1.29 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: 0.36 Total: 2.12 kcal Atomic # 7 Polarization: -47.42 SS G_CDS: -0.57 Total: -47.99 kcal Atomic # 8 Polarization: -16.82 SS G_CDS: -0.74 Total: -17.56 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -32.97 -7.46 -40.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846979999.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.278 kcal (2) G-P(sol) polarization free energy of solvation -32.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds