Wall clock time and date at job start Mon Mar 30 2020 21:22:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46899 * 111.00247 * 2 1 4 4 H 1.09002 * 110.45754 * 34.29796 * 3 2 1 5 5 C 1.54482 * 110.62463 * 271.61222 * 3 2 1 6 6 O 1.44427 * 104.80148 * 217.31702 * 5 3 2 7 7 C 1.44424 * 105.27650 * 40.51527 * 6 5 3 8 8 C 1.54483 * 104.80039 * 319.48511 * 7 6 5 9 9 H 1.09004 * 110.50507 * 142.62450 * 8 7 6 10 10 C 1.50698 * 110.62826 * 265.27406 * 8 7 6 11 11 O 1.21279 * 119.99849 * 114.71180 * 10 8 7 12 12 N 1.34775 * 120.00053 * 294.70973 * 10 8 7 13 13 C 1.46501 * 120.00178 * 0.02562 * 12 10 8 14 14 C 1.46505 * 119.99754 * 179.97438 * 12 10 8 15 15 H 1.09001 * 109.46814 * 0.02562 * 14 12 10 16 16 C 1.52991 * 109.47209 * 240.00386 * 14 12 10 17 17 C 1.50696 * 109.46807 * 120.00236 * 14 12 10 18 18 H 1.08011 * 120.00098 * 0.02562 * 17 14 12 19 19 C 1.37876 * 120.00071 * 179.97438 * 17 14 12 20 20 N 1.31510 * 120.00126 * 0.02562 * 19 17 14 21 21 Si 1.86805 * 119.99946 * 179.97438 * 19 17 14 22 22 H 1.48498 * 109.47088 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.46807 * 120.00455 * 21 19 17 24 24 H 1.48499 * 109.47242 * 239.99850 * 21 19 17 25 25 H 1.09001 * 109.47166 * 300.00554 * 1 2 3 26 26 H 1.09002 * 109.46687 * 60.00174 * 1 2 3 27 27 H 1.08996 * 109.47230 * 179.97438 * 1 2 3 28 28 H 1.00895 * 111.00153 * 236.04253 * 2 1 3 29 29 H 1.08999 * 110.37325 * 336.15210 * 5 3 2 30 30 H 1.09000 * 110.36935 * 98.48808 * 5 3 2 31 31 H 1.08995 * 110.37617 * 200.65774 * 7 6 5 32 32 H 1.09003 * 110.37616 * 78.31444 * 7 6 5 33 33 H 1.09007 * 109.46754 * 89.99869 * 13 12 10 34 34 H 1.08993 * 109.47052 * 209.99508 * 13 12 10 35 35 H 1.08996 * 109.46707 * 329.99932 * 13 12 10 36 36 H 1.09002 * 109.47318 * 180.02562 * 16 14 12 37 37 H 1.09001 * 109.47317 * 299.99795 * 16 14 12 38 38 H 1.09001 * 109.47380 * 60.00149 * 16 14 12 39 39 H 0.96999 * 120.00293 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 1 1.3444 2.0294 0.5755 5 6 2.1526 1.8940 -1.4452 6 8 3.3628 2.6819 -1.4232 7 6 4.2874 1.9362 -0.6017 8 6 3.4322 1.3998 0.5677 9 1 3.7529 0.3959 0.8461 10 6 3.5134 2.3264 1.7534 11 8 2.5244 2.9203 2.1276 12 7 4.6849 2.4951 2.3979 13 6 5.8797 1.7781 1.9455 14 6 4.7638 3.3963 3.5502 15 1 3.7837 3.8359 3.7354 16 6 5.7751 4.5072 3.2605 17 6 5.2038 2.6208 4.7652 18 1 5.4050 1.5625 4.6867 19 6 5.3506 3.2625 5.9767 20 7 5.1061 4.5511 6.0722 21 14 5.8952 2.3010 7.4828 22 1 6.1038 0.8780 7.1130 23 1 7.1662 2.8691 7.9997 24 1 4.8493 2.3919 8.5330 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8306 -0.5261 -0.7813 29 1 2.2545 1.0611 -2.1409 30 1 1.3000 2.5156 -1.7186 31 1 5.0748 2.5902 -0.2271 32 1 4.7168 1.1097 -1.1680 33 1 6.4079 2.3817 1.2073 34 1 6.5344 1.5898 2.7964 35 1 5.5858 0.8295 1.4962 36 1 5.8341 5.1775 4.1181 37 1 6.7551 4.0674 3.0756 38 1 5.4568 5.0681 2.3818 39 1 5.2097 5.0026 6.9244 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251452010.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:22:55 Heat of formation + Delta-G solvation = -70.328837 kcal Electronic energy + Delta-G solvation = -20283.074693 eV Core-core repulsion = 17226.121556 eV Total energy + Delta-G solvation = -3056.953137 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 256.157 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.31092 -38.15447 -35.63524 -35.18188 -32.98247 -31.25411 -29.28014 -28.31246 -26.16224 -25.20375 -24.81862 -23.53285 -21.86613 -20.33271 -18.35090 -16.78137 -16.68567 -16.38758 -15.84900 -15.59765 -15.03203 -14.49586 -14.36714 -14.00324 -13.74471 -13.35784 -12.75847 -12.51225 -12.48672 -12.22798 -11.97659 -11.71779 -11.59049 -11.44555 -11.09110 -10.97657 -10.85966 -10.78993 -10.64404 -10.23921 -10.15850 -9.93934 -9.15966 -8.86243 -8.53893 -8.41040 -7.57732 -6.05762 -4.13635 3.26906 3.33018 3.35701 3.38848 3.76373 3.93625 4.33413 4.42819 4.55383 4.80974 5.01090 5.04859 5.17891 5.25445 5.33128 5.36635 5.52412 5.61321 5.64351 5.74860 5.83551 5.89385 5.99642 6.03163 6.37443 6.62208 6.78083 6.86349 6.92836 7.08979 7.24519 7.44521 7.56097 7.73722 8.03976 8.21935 8.54706 8.85124 9.07350 9.52838 10.99621 Molecular weight = 256.16amu Principal moments of inertia in cm(-1) A = 0.028878 B = 0.005718 C = 0.005297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.377152 B = 4895.670626 C = 5284.291274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.681 5.681 3 C 0.062 3.938 4 H 0.119 0.881 5 C 0.021 3.979 6 O -0.367 6.367 7 C 0.052 3.948 8 C -0.138 4.138 9 H 0.116 0.884 10 C 0.518 3.482 11 O -0.549 6.549 12 N -0.591 5.591 13 C 0.080 3.920 14 C 0.257 3.743 15 H 0.063 0.937 16 C -0.146 4.146 17 C -0.524 4.524 18 H 0.060 0.940 19 C 0.064 3.936 20 N -0.888 5.888 21 Si 0.898 3.102 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.283 1.283 25 H 0.070 0.930 26 H 0.021 0.979 27 H 0.067 0.933 28 H 0.338 0.662 29 H 0.056 0.944 30 H 0.091 0.909 31 H 0.101 0.899 32 H 0.067 0.933 33 H 0.043 0.957 34 H 0.082 0.918 35 H 0.054 0.946 36 H 0.093 0.907 37 H 0.029 0.971 38 H 0.011 0.989 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.231 -8.322 -13.945 16.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.311 5.311 3 C -0.049 4.049 4 H 0.137 0.863 5 C -0.058 4.058 6 O -0.285 6.285 7 C -0.025 4.025 8 C -0.160 4.160 9 H 0.133 0.867 10 C 0.304 3.696 11 O -0.428 6.428 12 N -0.322 5.322 13 C -0.064 4.064 14 C 0.157 3.843 15 H 0.081 0.919 16 C -0.204 4.204 17 C -0.563 4.563 18 H 0.078 0.922 19 C -0.138 4.138 20 N -0.526 5.526 21 Si 0.726 3.274 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.209 1.209 25 H 0.089 0.911 26 H 0.040 0.960 27 H 0.086 0.914 28 H 0.156 0.844 29 H 0.074 0.926 30 H 0.109 0.891 31 H 0.119 0.881 32 H 0.085 0.915 33 H 0.062 0.938 34 H 0.100 0.900 35 H 0.073 0.927 36 H 0.111 0.889 37 H 0.048 0.952 38 H 0.030 0.970 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.647 -7.711 -13.001 15.346 hybrid contribution 0.237 -0.539 0.045 0.591 sum -2.411 -8.250 -12.956 15.548 Atomic orbital electron populations 1.22231 0.87276 1.01804 1.00826 1.60371 1.08245 1.13009 1.49473 1.23056 0.96493 0.90275 0.95089 0.86335 1.24188 0.88977 0.95795 0.96882 1.89164 1.23847 1.44846 1.70649 1.23539 0.92941 0.96446 0.89588 1.22640 0.96429 1.01376 0.95542 0.86658 1.19918 0.83661 0.82424 0.83562 1.90603 1.35485 1.49346 1.67343 1.48169 1.07655 1.44718 1.31622 1.21687 0.89198 0.95009 1.00458 1.18947 0.97707 0.86715 0.80889 0.91934 1.22078 0.98067 0.99974 1.00327 1.21360 1.46373 0.95350 0.93232 0.92177 1.24898 0.95202 0.94952 0.98776 1.69891 1.48708 1.08549 1.25443 0.86441 0.78207 0.80024 0.82717 1.19809 1.20955 1.20927 0.91106 0.96009 0.91403 0.84416 0.92558 0.89113 0.88109 0.91523 0.93807 0.89952 0.92750 0.88858 0.95177 0.96986 0.92754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.56 60.07 0.63 0.92 16 2 N -0.68 -8.06 6.60 -112.34 -0.74 -8.80 16 3 C 0.06 0.88 3.01 -66.14 -0.20 0.68 16 4 H 0.12 2.07 6.21 -51.93 -0.32 1.75 16 5 C 0.02 0.25 7.30 37.94 0.28 0.53 16 6 O -0.37 -5.59 11.65 -35.23 -0.41 -6.00 16 7 C 0.05 0.70 6.44 37.94 0.24 0.95 16 8 C -0.14 -2.12 2.35 -90.20 -0.21 -2.34 16 9 H 0.12 1.62 7.12 -51.93 -0.37 1.25 16 10 C 0.52 10.93 7.00 -10.99 -0.08 10.86 16 11 O -0.55 -13.81 14.61 5.56 0.08 -13.73 16 12 N -0.59 -12.68 2.73 -175.27 -0.48 -13.16 16 13 C 0.08 1.33 8.09 59.85 0.48 1.81 16 14 C 0.26 6.66 2.64 -69.09 -0.18 6.48 16 15 H 0.06 1.89 6.90 -51.93 -0.36 1.53 16 16 C -0.15 -3.54 8.97 37.15 0.33 -3.21 16 17 C -0.52 -14.25 7.99 -34.44 -0.28 -14.52 16 18 H 0.06 1.61 7.34 -52.48 -0.38 1.22 16 19 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 20 N -0.89 -25.33 11.32 55.43 0.63 -24.70 16 21 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 22 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 25 H 0.07 0.84 8.08 -51.93 -0.42 0.42 16 26 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 27 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.34 3.16 8.22 -39.29 -0.32 2.83 16 29 H 0.06 0.55 7.59 -51.93 -0.39 0.16 16 30 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.10 1.43 5.92 -51.93 -0.31 1.12 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.04 0.64 7.14 -51.93 -0.37 0.26 16 34 H 0.08 1.45 7.02 -51.93 -0.36 1.09 16 35 H 0.05 0.73 6.24 -51.93 -0.32 0.40 16 36 H 0.09 2.48 6.07 -51.93 -0.32 2.17 16 37 H 0.03 0.66 7.67 -51.93 -0.40 0.27 16 38 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 39 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 307.93 15.07 4.64 4.64 Total: -1.00 -32.03 307.93 -6.27 -38.30 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -5.90 Total: 3.50 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: 0.93 Total: 3.82 kcal Atomic # 7 Polarization: -46.06 SS G_CDS: -0.59 Total: -46.65 kcal Atomic # 8 Polarization: -19.40 SS G_CDS: -0.33 Total: -19.73 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -32.03 -6.27 -38.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251452010.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.028 kcal (2) G-P(sol) polarization free energy of solvation -32.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds