Wall clock time and date at job start Mon Mar 30 2020 21:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 110.38939 * 2 1 4 4 O 1.42898 * 109.47384 * 299.22079 * 3 2 1 5 5 C 1.54391 * 110.34456 * 237.76718 * 2 1 3 6 6 N 1.48140 * 104.61805 * 264.99792 * 5 2 1 7 7 C 1.34784 * 127.83841 * 140.41469 * 6 5 2 8 8 O 1.21682 * 119.99954 * 359.97438 * 7 6 5 9 9 C 1.46368 * 119.99916 * 179.72624 * 7 6 5 10 10 H 1.07998 * 120.00437 * 359.97438 * 9 7 6 11 11 C 1.40055 * 119.99853 * 179.97438 * 9 7 6 12 12 N 1.30662 * 119.99894 * 359.97438 * 11 9 7 13 13 Si 1.86805 * 119.99877 * 179.97438 * 11 9 7 14 14 H 1.48504 * 109.47029 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47165 * 120.00059 * 13 11 9 16 16 H 1.48495 * 109.46978 * 240.00192 * 13 11 9 17 17 C 1.48142 * 104.32471 * 320.67329 * 6 5 2 18 18 C 1.53986 * 104.81928 * 39.27867 * 17 6 5 19 19 C 1.52997 * 110.48927 * 217.46726 * 18 17 6 20 20 C 1.52996 * 110.16150 * 95.23363 * 18 17 6 21 21 O 1.42901 * 109.47341 * 64.52457 * 20 18 17 22 22 H 1.09000 * 109.46923 * 180.77384 * 1 2 3 23 23 H 1.08996 * 109.47142 * 300.77665 * 1 2 3 24 24 H 1.09003 * 109.46651 * 60.77607 * 1 2 3 25 25 H 1.08996 * 109.47163 * 59.22324 * 3 2 1 26 26 H 1.09002 * 109.47222 * 179.22206 * 3 2 1 27 27 H 0.96695 * 114.00344 * 179.97438 * 4 3 2 28 28 H 1.08993 * 110.40807 * 146.20775 * 5 2 1 29 29 H 1.09006 * 110.40342 * 23.78013 * 5 2 1 30 30 H 0.97000 * 120.00244 * 179.97438 * 12 11 9 31 31 H 1.09005 * 110.41121 * 158.10753 * 17 6 5 32 32 H 1.08999 * 110.41053 * 280.54111 * 17 6 5 33 33 H 1.09000 * 109.47208 * 175.66664 * 19 18 17 34 34 H 1.09002 * 109.47528 * 295.67055 * 19 18 17 35 35 H 1.09005 * 109.46895 * 55.66906 * 19 18 17 36 36 H 1.09003 * 109.47263 * 184.53032 * 20 18 17 37 37 H 1.09008 * 109.47008 * 304.52177 * 20 18 17 38 38 H 0.96696 * 113.99931 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0631 1.4341 0.0000 4 8 1.6126 2.1098 -1.1758 5 6 2.0668 -0.7721 -1.2245 6 7 2.3140 -2.1438 -0.7226 7 6 2.0774 -3.3106 -1.3546 8 8 1.6039 -3.3103 -2.4755 9 6 2.3951 -4.5778 -0.6947 10 1 2.8195 -4.5780 0.2984 11 6 2.1488 -5.7902 -1.3511 12 7 1.6349 -5.7900 -2.5525 13 14 2.5550 -7.4075 -0.5092 14 1 3.1233 -7.1364 0.8357 15 1 1.3182 -8.2177 -0.3704 16 1 3.5470 -8.1542 -1.3238 17 6 2.8742 -1.9424 0.6339 18 6 2.0664 -0.7716 1.2237 19 6 2.9692 0.1306 2.0675 20 6 0.9062 -1.3035 2.0674 21 8 1.4232 -2.0140 3.1943 22 1 -0.3633 -1.0276 0.0139 23 1 -0.3633 0.5258 0.8829 24 1 -0.3633 0.5018 -0.8969 25 1 1.6968 1.9579 0.8829 26 1 3.1529 1.4167 0.0140 27 1 1.9131 3.0264 -1.2422 28 1 2.9949 -0.3241 -1.5793 29 1 1.3223 -0.7870 -2.0206 30 1 1.4647 -6.6297 -3.0073 31 1 2.7382 -2.8392 1.2384 32 1 3.9304 -1.6800 0.5739 33 1 2.3998 0.9935 2.4129 34 1 3.3398 -0.4279 2.9270 35 1 3.8112 0.4689 1.4635 36 1 0.2956 -0.4692 2.4128 37 1 0.2957 -1.9749 1.4635 38 1 0.7420 -2.3797 3.7751 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705587708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:21:41 Heat of formation + Delta-G solvation = -131.246409 kcal Electronic energy + Delta-G solvation = -20846.417237 eV Core-core repulsion = 17689.103854 eV Total energy + Delta-G solvation = -3157.313384 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 257.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.14386 -36.76719 -36.60177 -35.28183 -32.64715 -32.15664 -31.03168 -27.94628 -26.88255 -25.16730 -24.65673 -24.43912 -21.02868 -19.32868 -17.74845 -17.47822 -16.86567 -16.30864 -15.53473 -15.46415 -15.01958 -14.36608 -14.07303 -13.85829 -13.42101 -13.03801 -12.87729 -12.53332 -12.31822 -12.23108 -11.84565 -11.67370 -11.42464 -11.16845 -11.09427 -10.95037 -10.82909 -10.44987 -10.31110 -10.16778 -10.03587 -9.95061 -9.67623 -9.51323 -8.83885 -7.59366 -7.19728 -6.17123 -4.60737 3.14441 3.22651 3.27865 4.09741 4.11496 4.52590 4.60718 4.67593 4.84956 4.93058 5.17558 5.30440 5.41476 5.44792 5.55428 5.67394 5.69311 5.74054 5.84824 5.95530 6.02173 6.08187 6.20444 6.28827 6.43095 6.48349 6.57073 6.62596 6.68691 6.79252 7.34542 7.47982 7.71245 7.84589 8.15939 8.47547 9.05343 9.57614 10.61126 10.80462 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.024576 B = 0.007171 C = 0.006097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.044251 B = 3903.455777 C = 4591.689536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.065 4.065 3 C 0.092 3.908 4 O -0.568 6.568 5 C 0.128 3.872 6 N -0.645 5.645 7 C 0.577 3.423 8 O -0.576 6.576 9 C -0.537 4.537 10 H 0.070 0.930 11 C 0.087 3.913 12 N -0.769 5.769 13 Si 0.907 3.093 14 H -0.263 1.263 15 H -0.276 1.276 16 H -0.276 1.276 17 C 0.128 3.872 18 C -0.065 4.065 19 C -0.137 4.137 20 C 0.092 3.908 21 O -0.570 6.570 22 H 0.062 0.938 23 H 0.048 0.952 24 H 0.062 0.938 25 H 0.045 0.955 26 H 0.050 0.950 27 H 0.373 0.627 28 H 0.046 0.954 29 H 0.073 0.927 30 H 0.268 0.732 31 H 0.085 0.915 32 H 0.047 0.953 33 H 0.052 0.948 34 H 0.066 0.934 35 H 0.056 0.944 36 H 0.041 0.959 37 H 0.056 0.944 38 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.115 12.302 10.745 16.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.067 4.067 3 C 0.014 3.986 4 O -0.373 6.373 5 C 0.003 3.997 6 N -0.384 5.384 7 C 0.384 3.616 8 O -0.458 6.458 9 C -0.574 4.574 10 H 0.088 0.912 11 C -0.133 4.133 12 N -0.398 5.398 13 Si 0.731 3.269 14 H -0.187 1.187 15 H -0.202 1.202 16 H -0.201 1.201 17 C 0.003 3.997 18 C -0.067 4.067 19 C -0.194 4.194 20 C 0.014 3.986 21 O -0.375 6.375 22 H 0.081 0.919 23 H 0.067 0.933 24 H 0.081 0.919 25 H 0.063 0.937 26 H 0.068 0.932 27 H 0.219 0.781 28 H 0.064 0.936 29 H 0.092 0.908 30 H 0.078 0.922 31 H 0.103 0.897 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.059 0.941 37 H 0.074 0.926 38 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 0.052 11.637 9.484 15.013 hybrid contribution -0.038 -0.306 0.862 0.916 sum 0.014 11.331 10.346 15.344 Atomic orbital electron populations 1.21833 0.93820 1.02132 1.01405 1.21502 0.96558 0.92701 0.95894 1.22368 0.97381 0.92239 0.86630 1.86538 1.77682 1.29056 1.43995 1.21856 0.99062 0.83940 0.94808 1.49278 1.68631 1.04439 1.16095 1.18008 0.77757 0.80979 0.84861 1.90613 1.49346 1.85757 1.20125 1.20921 1.44590 0.88936 1.02942 0.91154 1.25729 0.92977 1.00279 0.94288 1.70034 1.31469 1.27163 1.11137 0.86326 0.78607 0.81735 0.80203 1.18666 1.20169 1.20145 1.21950 0.95058 0.97001 0.85736 1.21426 0.95668 0.96111 0.93470 1.21851 0.98880 0.98682 0.99983 1.22292 0.94861 0.94524 0.86882 1.86438 1.37679 1.74440 1.38965 0.91892 0.93271 0.91924 0.93736 0.93219 0.78111 0.93557 0.90806 0.92170 0.89663 0.93484 0.92927 0.91531 0.92474 0.94101 0.92559 0.77916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.09 7.11 37.16 0.26 -1.83 16 2 C -0.07 -1.04 0.83 -153.10 -0.13 -1.16 16 3 C 0.09 1.15 4.64 37.16 0.17 1.32 16 4 O -0.57 -7.24 12.81 -35.23 -0.45 -7.69 16 5 C 0.13 2.64 5.88 -2.41 -0.01 2.63 16 6 N -0.65 -15.47 3.32 -171.22 -0.57 -16.03 16 7 C 0.58 17.11 7.84 -12.99 -0.10 17.01 16 8 O -0.58 -19.41 15.29 5.20 0.08 -19.33 16 9 C -0.54 -15.60 9.07 -35.63 -0.32 -15.92 16 10 H 0.07 1.91 6.51 -52.49 -0.34 1.57 16 11 C 0.09 2.47 5.50 -17.37 -0.10 2.37 16 12 N -0.77 -23.50 11.83 55.55 0.66 -22.85 16 13 Si 0.91 20.54 29.56 -169.99 -5.02 15.52 16 14 H -0.26 -5.76 7.11 56.52 0.40 -5.36 16 15 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 16 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 17 C 0.13 2.50 5.87 -2.62 -0.02 2.49 16 18 C -0.07 -1.02 0.83 -153.32 -0.13 -1.14 16 19 C -0.14 -1.71 7.14 37.16 0.27 -1.44 16 20 C 0.09 1.35 4.71 37.16 0.17 1.52 16 21 O -0.57 -7.98 12.32 -35.23 -0.43 -8.42 16 22 H 0.06 1.10 6.61 -51.93 -0.34 0.76 16 23 H 0.05 0.63 6.98 -51.93 -0.36 0.27 16 24 H 0.06 1.00 7.79 -51.93 -0.40 0.60 16 25 H 0.04 0.48 6.98 -51.93 -0.36 0.11 16 26 H 0.05 0.59 6.61 -51.93 -0.34 0.25 16 27 H 0.37 2.82 9.12 45.56 0.42 3.24 16 28 H 0.05 0.93 7.86 -51.93 -0.41 0.52 16 29 H 0.07 1.72 7.60 -51.93 -0.39 1.32 16 30 H 0.27 7.38 8.29 -40.82 -0.34 7.04 16 31 H 0.09 1.80 5.97 -51.93 -0.31 1.49 16 32 H 0.05 0.88 7.82 -51.93 -0.41 0.47 16 33 H 0.05 0.56 6.89 -51.93 -0.36 0.21 16 34 H 0.07 0.86 7.62 -51.93 -0.40 0.46 16 35 H 0.06 0.67 6.68 -51.93 -0.35 0.32 16 36 H 0.04 0.51 6.88 -51.93 -0.36 0.15 16 37 H 0.06 0.96 6.72 -51.92 -0.35 0.61 16 38 H 0.37 3.58 9.12 45.56 0.42 3.99 16 LS Contribution 297.93 15.07 4.49 4.49 Total: -1.00 -36.90 297.93 -4.97 -41.87 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -3.79 Total: 6.61 kcal Atomic # 6 Polarization: 5.77 SS G_CDS: 0.07 Total: 5.84 kcal Atomic # 7 Polarization: -38.97 SS G_CDS: 0.09 Total: -38.88 kcal Atomic # 8 Polarization: -34.63 SS G_CDS: -0.81 Total: -35.44 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -36.90 -4.97 -41.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705587708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.378 kcal (2) G-P(sol) polarization free energy of solvation -36.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds