Wall clock time and date at job start Mon Mar 30 2020 21:21:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 110.38939 * 2 1 4 4 O 1.42898 * 109.47384 * 299.22079 * 3 2 1 5 5 C 1.54391 * 110.34456 * 237.76718 * 2 1 3 6 6 N 1.48140 * 104.61805 * 264.99792 * 5 2 1 7 7 C 1.34784 * 127.83841 * 140.41469 * 6 5 2 8 8 O 1.21682 * 119.99954 * 359.97438 * 7 6 5 9 9 C 1.46368 * 119.99916 * 179.72624 * 7 6 5 10 10 H 1.07998 * 120.00437 * 359.97438 * 9 7 6 11 11 C 1.40055 * 119.99853 * 179.97438 * 9 7 6 12 12 N 1.30662 * 119.99894 * 359.97438 * 11 9 7 13 13 Si 1.86805 * 119.99877 * 179.97438 * 11 9 7 14 14 H 1.48504 * 109.47029 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47165 * 120.00059 * 13 11 9 16 16 H 1.48495 * 109.46978 * 240.00192 * 13 11 9 17 17 C 1.48142 * 104.32471 * 320.67329 * 6 5 2 18 18 C 1.53986 * 104.81928 * 39.27867 * 17 6 5 19 19 C 1.52997 * 110.48927 * 217.46726 * 18 17 6 20 20 C 1.52996 * 110.16150 * 95.23363 * 18 17 6 21 21 O 1.42901 * 109.47341 * 64.52457 * 20 18 17 22 22 H 1.09000 * 109.46923 * 180.77384 * 1 2 3 23 23 H 1.08996 * 109.47142 * 300.77665 * 1 2 3 24 24 H 1.09003 * 109.46651 * 60.77607 * 1 2 3 25 25 H 1.08996 * 109.47163 * 59.22324 * 3 2 1 26 26 H 1.09002 * 109.47222 * 179.22206 * 3 2 1 27 27 H 0.96695 * 114.00344 * 179.97438 * 4 3 2 28 28 H 1.08993 * 110.40807 * 146.20775 * 5 2 1 29 29 H 1.09006 * 110.40342 * 23.78013 * 5 2 1 30 30 H 0.97000 * 120.00244 * 179.97438 * 12 11 9 31 31 H 1.09005 * 110.41121 * 158.10753 * 17 6 5 32 32 H 1.08999 * 110.41053 * 280.54111 * 17 6 5 33 33 H 1.09000 * 109.47208 * 175.66664 * 19 18 17 34 34 H 1.09002 * 109.47528 * 295.67055 * 19 18 17 35 35 H 1.09005 * 109.46895 * 55.66906 * 19 18 17 36 36 H 1.09003 * 109.47263 * 184.53032 * 20 18 17 37 37 H 1.09008 * 109.47008 * 304.52177 * 20 18 17 38 38 H 0.96696 * 113.99931 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0631 1.4341 0.0000 4 8 1.6126 2.1098 -1.1758 5 6 2.0668 -0.7721 -1.2245 6 7 2.3140 -2.1438 -0.7226 7 6 2.0774 -3.3106 -1.3546 8 8 1.6039 -3.3103 -2.4755 9 6 2.3951 -4.5778 -0.6947 10 1 2.8195 -4.5780 0.2984 11 6 2.1488 -5.7902 -1.3511 12 7 1.6349 -5.7900 -2.5525 13 14 2.5550 -7.4075 -0.5092 14 1 3.1233 -7.1364 0.8357 15 1 1.3182 -8.2177 -0.3704 16 1 3.5470 -8.1542 -1.3238 17 6 2.8742 -1.9424 0.6339 18 6 2.0664 -0.7716 1.2237 19 6 2.9692 0.1306 2.0675 20 6 0.9062 -1.3035 2.0674 21 8 1.4232 -2.0140 3.1943 22 1 -0.3633 -1.0276 0.0139 23 1 -0.3633 0.5258 0.8829 24 1 -0.3633 0.5018 -0.8969 25 1 1.6968 1.9579 0.8829 26 1 3.1529 1.4167 0.0140 27 1 1.9131 3.0264 -1.2422 28 1 2.9949 -0.3241 -1.5793 29 1 1.3223 -0.7870 -2.0206 30 1 1.4647 -6.6297 -3.0073 31 1 2.7382 -2.8392 1.2384 32 1 3.9304 -1.6800 0.5739 33 1 2.3998 0.9935 2.4129 34 1 3.3398 -0.4279 2.9270 35 1 3.8112 0.4689 1.4635 36 1 0.2956 -0.4692 2.4128 37 1 0.2957 -1.9749 1.4635 38 1 0.7420 -2.3797 3.7751 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705587708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:21:40 Heat of formation + Delta-G solvation = -163.946308 kcal Electronic energy + Delta-G solvation = -20847.835211 eV Core-core repulsion = 17689.103854 eV Total energy + Delta-G solvation = -3158.731358 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 257.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.54251 -38.74879 -37.65471 -36.63146 -34.73283 -33.98830 -32.30763 -29.29764 -28.75455 -26.72174 -26.23891 -25.68690 -22.44276 -21.27177 -19.18866 -18.67884 -18.13561 -17.88269 -17.59748 -16.82628 -16.32910 -15.99842 -15.69168 -15.17054 -14.93040 -14.60815 -14.21742 -13.97800 -13.81504 -13.38216 -13.34755 -13.22529 -13.01143 -12.85717 -12.80287 -12.47396 -12.41155 -12.25273 -11.99828 -11.59031 -11.40880 -11.17149 -10.98806 -10.69993 -10.64548 -9.91119 -9.18932 -8.33851 -6.89238 1.35864 1.36538 1.55037 2.20499 2.40532 2.81152 3.06289 3.38183 3.55075 3.64233 3.85928 4.00135 4.17719 4.24415 4.28859 4.41370 4.54542 4.58028 4.68589 4.69951 4.79860 4.80460 4.84602 4.93026 5.03124 5.13685 5.17284 5.24733 5.31000 5.39815 5.48458 5.62943 5.99311 6.37600 6.82542 6.96382 7.05452 7.47681 8.41717 8.63202 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.024576 B = 0.007171 C = 0.006097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.044251 B = 3903.455777 C = 4591.689536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.058 4.058 3 C 0.097 3.903 4 O -0.592 6.592 5 C 0.124 3.876 6 N -0.654 5.654 7 C 0.558 3.442 8 O -0.635 6.635 9 C -0.562 4.562 10 H 0.083 0.917 11 C 0.028 3.972 12 N -0.823 5.823 13 Si 0.999 3.001 14 H -0.248 1.248 15 H -0.265 1.265 16 H -0.266 1.266 17 C 0.123 3.877 18 C -0.059 4.059 19 C -0.129 4.129 20 C 0.096 3.904 21 O -0.581 6.581 22 H 0.030 0.970 23 H 0.086 0.914 24 H 0.051 0.949 25 H 0.081 0.919 26 H 0.062 0.938 27 H 0.397 0.603 28 H 0.051 0.949 29 H 0.033 0.967 30 H 0.275 0.725 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.083 0.917 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.021 0.979 38 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.889 13.572 13.900 19.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.060 4.060 3 C 0.020 3.980 4 O -0.401 6.401 5 C 0.000 4.000 6 N -0.391 5.391 7 C 0.366 3.634 8 O -0.523 6.523 9 C -0.599 4.599 10 H 0.101 0.899 11 C -0.187 4.187 12 N -0.452 5.452 13 Si 0.817 3.183 14 H -0.171 1.171 15 H -0.189 1.189 16 H -0.190 1.190 17 C 0.000 4.000 18 C -0.060 4.060 19 C -0.187 4.187 20 C 0.019 3.981 21 O -0.389 6.389 22 H 0.050 0.950 23 H 0.105 0.895 24 H 0.070 0.930 25 H 0.099 0.901 26 H 0.080 0.920 27 H 0.247 0.753 28 H 0.070 0.930 29 H 0.052 0.948 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.102 0.898 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.093 0.907 37 H 0.039 0.961 38 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 0.841 12.981 12.698 18.178 hybrid contribution -0.282 -0.635 -0.148 0.710 sum 0.560 12.346 12.550 17.613 Atomic orbital electron populations 1.21786 0.93741 1.00522 1.02640 1.21474 0.96607 0.94652 0.93238 1.22328 0.97966 0.89819 0.87928 1.86491 1.78131 1.31103 1.44334 1.22023 0.98428 0.83118 0.96395 1.49045 1.67756 1.04452 1.17842 1.18369 0.77531 0.83019 0.84524 1.90547 1.51951 1.87222 1.22536 1.21358 1.45201 0.89680 1.03647 0.89914 1.27029 0.91921 1.04970 0.94791 1.70202 1.32652 1.28988 1.13392 0.84966 0.78857 0.75202 0.79248 1.17077 1.18931 1.19031 1.22177 0.96313 0.98318 0.83224 1.21399 0.96025 0.94878 0.93680 1.21831 0.98791 0.98786 0.99242 1.22183 0.94291 0.94918 0.86735 1.86389 1.38966 1.74666 1.38859 0.95049 0.89483 0.93019 0.90129 0.92031 0.75346 0.93047 0.94780 0.91462 0.91599 0.92346 0.89820 0.91704 0.91454 0.90695 0.96104 0.75683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.93 7.11 71.98 0.51 -3.42 16 2 C -0.06 -1.78 0.83 -51.27 -0.04 -1.82 16 3 C 0.10 2.07 4.64 71.98 0.33 2.41 16 4 O -0.59 -13.58 12.81 -148.98 -1.91 -15.49 16 5 C 0.12 5.33 5.88 86.54 0.51 5.83 16 6 N -0.65 -32.77 3.32 -813.83 -2.70 -35.47 16 7 C 0.56 35.08 7.84 86.36 0.68 35.76 16 8 O -0.63 -45.85 15.29 -4.29 -0.07 -45.91 16 9 C -0.56 -33.88 9.07 24.83 0.23 -33.65 16 10 H 0.08 4.60 6.51 -2.91 -0.02 4.58 16 11 C 0.03 1.61 5.50 85.31 0.47 2.08 16 12 N -0.82 -52.43 11.83 21.84 0.26 -52.17 16 13 Si 1.00 42.61 29.56 68.60 2.03 44.64 16 14 H -0.25 -9.85 7.11 99.48 0.71 -9.14 16 15 H -0.26 -10.72 7.11 99.48 0.71 -10.02 16 16 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 17 C 0.12 4.84 5.87 86.40 0.51 5.34 16 18 C -0.06 -1.70 0.83 -51.41 -0.04 -1.74 16 19 C -0.13 -2.65 7.14 71.98 0.51 -2.14 16 20 C 0.10 2.63 4.71 71.98 0.34 2.97 16 21 O -0.58 -14.93 12.32 -148.98 -1.84 -16.76 16 22 H 0.03 1.13 6.61 -2.39 -0.02 1.11 16 23 H 0.09 1.95 6.98 -2.39 -0.02 1.93 16 24 H 0.05 1.66 7.79 -2.39 -0.02 1.64 16 25 H 0.08 1.21 6.98 -2.39 -0.02 1.20 16 26 H 0.06 1.19 6.61 -2.39 -0.02 1.18 16 27 H 0.40 4.71 9.12 -74.06 -0.68 4.04 16 28 H 0.05 2.11 7.86 -2.39 -0.02 2.09 16 29 H 0.03 1.70 7.60 -2.38 -0.02 1.68 16 30 H 0.28 15.76 8.29 -92.71 -0.77 14.99 16 31 H 0.07 2.82 5.97 -2.38 -0.01 2.80 16 32 H 0.06 2.13 7.82 -2.39 -0.02 2.11 16 33 H 0.08 1.26 6.89 -2.39 -0.02 1.24 16 34 H 0.06 1.40 7.62 -2.39 -0.02 1.38 16 35 H 0.07 1.27 6.68 -2.38 -0.02 1.25 16 36 H 0.08 1.56 6.88 -2.39 -0.02 1.54 16 37 H 0.02 0.71 6.72 -2.38 -0.02 0.70 16 38 H 0.39 6.59 9.12 -74.06 -0.68 5.91 16 Total: -1.00 -86.98 297.93 -0.48 -87.46 By element: Atomic # 1 Polarization: 22.35 SS G_CDS: -0.25 Total: 22.10 kcal Atomic # 6 Polarization: 7.61 SS G_CDS: 4.00 Total: 11.61 kcal Atomic # 7 Polarization: -85.20 SS G_CDS: -2.44 Total: -87.64 kcal Atomic # 8 Polarization: -74.35 SS G_CDS: -3.81 Total: -78.16 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.64 kcal Total: -86.98 -0.48 -87.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705587708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.490 kcal (2) G-P(sol) polarization free energy of solvation -86.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds