Wall clock time and date at job start Mon Mar 30 2020 21:23:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.34785 * 119.99845 * 2 1 4 4 O 1.21281 * 119.99712 * 0.02562 * 3 2 1 5 5 C 1.50698 * 119.99809 * 179.97438 * 3 2 1 6 6 C 1.52999 * 109.46885 * 180.02562 * 5 3 2 7 7 N 1.46901 * 109.47403 * 180.02562 * 6 5 3 8 8 C 1.46894 * 111.00335 * 180.02562 * 7 6 5 9 9 H 1.09007 * 109.47039 * 324.99334 * 8 7 6 10 10 C 1.50696 * 109.47789 * 84.99541 * 8 7 6 11 11 H 1.07995 * 120.00571 * 234.80086 * 10 8 7 12 12 C 1.37880 * 119.99684 * 54.79534 * 10 8 7 13 13 N 1.31520 * 120.00156 * 2.52139 * 12 10 8 14 14 Si 1.86802 * 120.00014 * 182.51805 * 12 10 8 15 15 H 1.48499 * 109.47116 * 90.00073 * 14 12 10 16 16 H 1.48503 * 109.47033 * 210.00199 * 14 12 10 17 17 H 1.48499 * 109.47164 * 329.99894 * 14 12 10 18 18 C 1.50699 * 109.47275 * 204.99922 * 8 7 6 19 19 C 1.38239 * 119.99729 * 330.49993 * 18 8 7 20 20 C 1.38232 * 120.00259 * 179.97438 * 19 18 8 21 21 C 1.38237 * 119.99651 * 359.95498 * 20 19 18 22 22 C 1.38232 * 120.00292 * 0.02562 * 21 20 19 23 23 C 1.38226 * 120.00472 * 150.47494 * 18 8 7 24 24 H 1.09000 * 109.47387 * 299.99757 * 1 2 3 25 25 H 1.08996 * 109.47514 * 59.99916 * 1 2 3 26 26 H 1.09003 * 109.47115 * 179.97438 * 1 2 3 27 27 H 0.96994 * 120.00605 * 180.02562 * 2 1 3 28 28 H 1.08997 * 109.47083 * 60.00821 * 5 3 2 29 29 H 1.08996 * 109.47632 * 300.00160 * 5 3 2 30 30 H 1.09000 * 109.46977 * 60.00008 * 6 5 3 31 31 H 1.09008 * 109.47390 * 300.00196 * 6 5 3 32 32 H 1.00908 * 110.99311 * 303.95333 * 7 6 5 33 33 H 0.96999 * 119.99883 * 179.97438 * 13 12 10 34 34 H 1.08003 * 120.00092 * 359.97438 * 19 18 8 35 35 H 1.07995 * 120.00640 * 179.97438 * 20 19 18 36 36 H 1.08006 * 119.99845 * 179.72086 * 21 20 19 37 37 H 1.08003 * 120.00294 * 179.97438 * 22 21 20 38 38 H 1.08004 * 120.00126 * 0.02562 * 23 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5323 2.2176 0.0005 5 6 3.6458 1.1673 0.0006 6 6 4.1557 2.6098 0.0011 7 7 5.6247 2.6099 0.0011 8 6 6.1511 3.9813 0.0022 9 1 5.4954 4.6227 -0.5869 10 6 6.2155 4.4937 1.4179 11 1 5.7246 5.4192 1.6801 12 6 6.9012 3.7807 2.3785 13 7 7.5405 2.6797 2.0489 14 14 6.9221 4.3788 4.1480 15 1 5.7753 3.7884 4.8837 16 1 8.1924 3.9637 4.7958 17 1 6.8156 5.8598 4.1713 18 6 7.5333 3.9894 -0.5983 19 6 8.3417 2.8735 -0.4871 20 6 9.6093 2.8806 -1.0383 21 6 10.0683 4.0033 -1.7016 22 6 9.2598 5.1190 -1.8132 23 6 7.9926 5.1123 -1.2607 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.9500 -0.8399 -0.0004 28 1 4.0094 0.6534 -0.8892 29 1 4.0089 0.6537 0.8907 30 1 3.7920 3.1234 0.8911 31 1 3.7927 3.1239 -0.8889 32 1 5.9863 2.0835 0.7823 33 1 8.0232 2.1784 2.7246 34 1 7.9828 1.9961 0.0304 35 1 10.2410 2.0090 -0.9511 36 1 11.0604 4.0105 -2.1284 37 1 9.6185 5.9962 -2.3310 38 1 7.3611 5.9841 -1.3476 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055018708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:23:59 Heat of formation + Delta-G solvation = -13.608447 kcal Electronic energy + Delta-G solvation = -19476.328703 eV Core-core repulsion = 16511.376536 eV Total energy + Delta-G solvation = -2964.952167 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.41038 -38.16980 -35.59397 -34.44382 -32.68550 -30.90952 -29.70856 -28.97652 -26.84412 -25.69952 -22.90968 -21.83369 -20.97650 -20.06313 -19.76031 -17.01494 -16.47961 -15.99276 -15.56036 -15.45308 -14.94762 -14.07507 -14.03005 -13.82430 -13.37479 -13.25943 -12.60341 -12.38958 -12.35015 -12.28787 -11.87755 -11.63926 -11.39032 -11.00749 -10.99242 -10.72963 -10.62308 -10.28236 -9.95069 -9.64101 -9.61355 -9.46110 -9.06403 -8.69345 -7.74906 -7.38399 -7.03130 -6.04327 -4.30439 2.57567 2.69042 2.89620 3.21386 3.28937 3.33286 3.36260 4.30275 4.93578 5.03965 5.14043 5.24652 5.43316 5.49282 5.66530 5.72089 5.87598 5.95998 6.04377 6.14532 6.23301 6.45005 6.50549 6.63767 6.79625 6.88083 6.92718 6.98151 7.21508 7.35177 7.56893 7.59112 7.67760 7.82838 8.01387 8.09161 8.30377 8.39515 8.45359 8.84461 9.08161 9.41679 10.80755 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.016816 B = 0.005876 C = 0.004839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.639122 B = 4764.030938 C = 5785.189230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.744 5.744 3 C 0.513 3.487 4 O -0.538 6.538 5 C -0.136 4.136 6 C 0.083 3.917 7 N -0.691 5.691 8 C 0.238 3.762 9 H 0.037 0.963 10 C -0.536 4.536 11 H 0.058 0.942 12 C 0.071 3.929 13 N -0.880 5.880 14 Si 0.893 3.107 15 H -0.280 1.280 16 H -0.285 1.285 17 H -0.274 1.274 18 C -0.017 4.017 19 C -0.051 4.051 20 C -0.149 4.149 21 C -0.154 4.154 22 C -0.144 4.144 23 C -0.135 4.135 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.070 0.930 27 H 0.401 0.599 28 H 0.096 0.904 29 H 0.089 0.911 30 H 0.033 0.967 31 H 0.058 0.942 32 H 0.363 0.637 33 H 0.266 0.734 34 H 0.144 0.856 35 H 0.100 0.900 36 H 0.098 0.902 37 H 0.100 0.900 38 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.032 -7.277 -4.050 9.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.397 5.397 3 C 0.301 3.699 4 O -0.414 6.414 5 C -0.176 4.176 6 C -0.048 4.048 7 N -0.327 5.327 8 C 0.129 3.871 9 H 0.055 0.945 10 C -0.575 4.575 11 H 0.076 0.924 12 C -0.131 4.131 13 N -0.519 5.519 14 Si 0.721 3.279 15 H -0.206 1.206 16 H -0.210 1.210 17 H -0.199 1.199 18 C -0.018 4.018 19 C -0.070 4.070 20 C -0.167 4.167 21 C -0.172 4.172 22 C -0.163 4.163 23 C -0.154 4.154 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.089 0.911 27 H 0.234 0.766 28 H 0.114 0.886 29 H 0.107 0.893 30 H 0.051 0.949 31 H 0.076 0.924 32 H 0.188 0.812 33 H 0.076 0.924 34 H 0.162 0.838 35 H 0.118 0.882 36 H 0.116 0.884 37 H 0.118 0.882 38 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -5.326 -6.722 -4.623 9.743 hybrid contribution 0.243 0.220 2.074 2.100 sum -5.083 -6.502 -2.548 8.638 Atomic orbital electron populations 1.21466 0.80369 1.01671 1.02115 1.45904 1.07415 1.09058 1.77358 1.21063 0.90913 0.83175 0.74792 1.90689 1.70762 1.31358 1.48615 1.21654 0.89743 1.01934 1.04265 1.21401 0.90782 0.91994 1.00639 1.60938 1.03632 1.16496 1.51645 1.18067 0.88563 0.86896 0.93549 0.94516 1.21735 1.33321 1.08813 0.93617 0.92386 1.24988 0.93901 0.95142 0.99110 1.69606 1.32675 1.16198 1.33398 0.86566 0.77430 0.79377 0.84555 1.20629 1.21022 1.19901 1.20168 0.98080 0.92054 0.91508 1.21315 0.91867 0.99959 0.93817 1.21082 0.97380 0.97542 1.00695 1.20757 0.98800 0.94760 1.02892 1.20743 0.95151 0.97696 1.02665 1.20849 0.95959 0.98270 1.00300 0.92516 0.92514 0.91077 0.76574 0.88615 0.89282 0.94881 0.92365 0.81211 0.92362 0.83822 0.88186 0.88402 0.88184 0.87889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.86 10.70 59.84 0.64 1.50 16 2 N -0.74 -8.44 5.71 -67.08 -0.38 -8.82 16 3 C 0.51 8.09 7.83 -10.98 -0.09 8.01 16 4 O -0.54 -10.74 15.98 5.56 0.09 -10.65 16 5 C -0.14 -2.13 5.96 -27.88 -0.17 -2.30 16 6 C 0.08 1.68 4.77 -3.82 -0.02 1.66 16 7 N -0.69 -15.40 5.39 -109.19 -0.59 -15.99 16 8 C 0.24 5.80 2.50 -70.02 -0.18 5.62 16 9 H 0.04 0.90 7.75 -51.92 -0.40 0.49 16 10 C -0.54 -14.09 8.63 -34.44 -0.30 -14.39 16 11 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 12 C 0.07 1.83 5.05 -17.82 -0.09 1.74 16 13 N -0.88 -22.15 7.97 55.43 0.44 -21.71 16 14 Si 0.89 20.61 29.54 -169.99 -5.02 15.59 16 15 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 16 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 17 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 18 C -0.02 -0.40 4.79 -104.63 -0.50 -0.90 16 19 C -0.05 -1.17 7.66 -39.58 -0.30 -1.48 16 20 C -0.15 -3.08 10.05 -39.58 -0.40 -3.48 16 21 C -0.15 -3.00 10.05 -39.58 -0.40 -3.40 16 22 C -0.14 -2.87 10.05 -39.58 -0.40 -3.27 16 23 C -0.14 -2.97 9.70 -39.59 -0.38 -3.35 16 24 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.40 3.26 8.83 -40.82 -0.36 2.90 16 28 H 0.10 1.34 8.14 -51.93 -0.42 0.91 16 29 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 30 H 0.03 0.76 7.96 -51.93 -0.41 0.34 16 31 H 0.06 1.21 8.01 -51.92 -0.42 0.80 16 32 H 0.36 8.51 5.52 -39.29 -0.22 8.29 16 33 H 0.27 6.48 8.31 -40.82 -0.34 6.14 16 34 H 0.14 3.43 5.59 -52.48 -0.29 3.14 16 35 H 0.10 1.84 8.06 -52.49 -0.42 1.41 16 36 H 0.10 1.62 8.06 -52.48 -0.42 1.20 16 37 H 0.10 1.70 8.06 -52.48 -0.42 1.27 16 38 H 0.10 2.12 8.06 -52.48 -0.42 1.70 16 LS Contribution 316.39 15.07 4.77 4.77 Total: -1.00 -29.35 316.39 -8.72 -38.08 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: -5.45 Total: 12.79 kcal Atomic # 6 Polarization: -11.48 SS G_CDS: -2.57 Total: -14.05 kcal Atomic # 7 Polarization: -45.99 SS G_CDS: -0.53 Total: -46.52 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.09 Total: -10.65 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.35 -8.72 -38.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055018708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.467 kcal (2) G-P(sol) polarization free energy of solvation -29.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds