Wall clock time and date at job start Mon Mar 30 2020 21:23:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.34785 * 119.99845 * 2 1 4 4 O 1.21281 * 119.99712 * 0.02562 * 3 2 1 5 5 C 1.50698 * 119.99809 * 179.97438 * 3 2 1 6 6 C 1.52999 * 109.46885 * 180.02562 * 5 3 2 7 7 N 1.46901 * 109.47403 * 180.02562 * 6 5 3 8 8 C 1.46894 * 111.00335 * 180.02562 * 7 6 5 9 9 H 1.09007 * 109.47039 * 324.99334 * 8 7 6 10 10 C 1.50696 * 109.47789 * 84.99541 * 8 7 6 11 11 H 1.07995 * 120.00571 * 234.80086 * 10 8 7 12 12 C 1.37880 * 119.99684 * 54.79534 * 10 8 7 13 13 N 1.31520 * 120.00156 * 2.52139 * 12 10 8 14 14 Si 1.86802 * 120.00014 * 182.51805 * 12 10 8 15 15 H 1.48499 * 109.47116 * 90.00073 * 14 12 10 16 16 H 1.48503 * 109.47033 * 210.00199 * 14 12 10 17 17 H 1.48499 * 109.47164 * 329.99894 * 14 12 10 18 18 C 1.50699 * 109.47275 * 204.99922 * 8 7 6 19 19 C 1.38239 * 119.99729 * 330.49993 * 18 8 7 20 20 C 1.38232 * 120.00259 * 179.97438 * 19 18 8 21 21 C 1.38237 * 119.99651 * 359.95498 * 20 19 18 22 22 C 1.38232 * 120.00292 * 0.02562 * 21 20 19 23 23 C 1.38226 * 120.00472 * 150.47494 * 18 8 7 24 24 H 1.09000 * 109.47387 * 299.99757 * 1 2 3 25 25 H 1.08996 * 109.47514 * 59.99916 * 1 2 3 26 26 H 1.09003 * 109.47115 * 179.97438 * 1 2 3 27 27 H 0.96994 * 120.00605 * 180.02562 * 2 1 3 28 28 H 1.08997 * 109.47083 * 60.00821 * 5 3 2 29 29 H 1.08996 * 109.47632 * 300.00160 * 5 3 2 30 30 H 1.09000 * 109.46977 * 60.00008 * 6 5 3 31 31 H 1.09008 * 109.47390 * 300.00196 * 6 5 3 32 32 H 1.00908 * 110.99311 * 303.95333 * 7 6 5 33 33 H 0.96999 * 119.99883 * 179.97438 * 13 12 10 34 34 H 1.08003 * 120.00092 * 359.97438 * 19 18 8 35 35 H 1.07995 * 120.00640 * 179.97438 * 20 19 18 36 36 H 1.08006 * 119.99845 * 179.72086 * 21 20 19 37 37 H 1.08003 * 120.00294 * 179.97438 * 22 21 20 38 38 H 1.08004 * 120.00126 * 0.02562 * 23 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5323 2.2176 0.0005 5 6 3.6458 1.1673 0.0006 6 6 4.1557 2.6098 0.0011 7 7 5.6247 2.6099 0.0011 8 6 6.1511 3.9813 0.0022 9 1 5.4954 4.6227 -0.5869 10 6 6.2155 4.4937 1.4179 11 1 5.7246 5.4192 1.6801 12 6 6.9012 3.7807 2.3785 13 7 7.5405 2.6797 2.0489 14 14 6.9221 4.3788 4.1480 15 1 5.7753 3.7884 4.8837 16 1 8.1924 3.9637 4.7958 17 1 6.8156 5.8598 4.1713 18 6 7.5333 3.9894 -0.5983 19 6 8.3417 2.8735 -0.4871 20 6 9.6093 2.8806 -1.0383 21 6 10.0683 4.0033 -1.7016 22 6 9.2598 5.1190 -1.8132 23 6 7.9926 5.1123 -1.2607 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.9500 -0.8399 -0.0004 28 1 4.0094 0.6534 -0.8892 29 1 4.0089 0.6537 0.8907 30 1 3.7920 3.1234 0.8911 31 1 3.7927 3.1239 -0.8889 32 1 5.9863 2.0835 0.7823 33 1 8.0232 2.1784 2.7246 34 1 7.9828 1.9961 0.0304 35 1 10.2410 2.0090 -0.9511 36 1 11.0604 4.0105 -2.1284 37 1 9.6185 5.9962 -2.3310 38 1 7.3611 5.9841 -1.3476 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055018708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:23:59 Heat of formation + Delta-G solvation = -32.947225 kcal Electronic energy + Delta-G solvation = -19477.167295 eV Core-core repulsion = 16511.376536 eV Total energy + Delta-G solvation = -2965.790759 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.68802 -39.84539 -37.31510 -35.57848 -34.44641 -32.64394 -31.34227 -30.48176 -28.36678 -27.13198 -24.62224 -23.44619 -22.55095 -21.56067 -21.27369 -18.59552 -18.04884 -17.54355 -16.91467 -16.76691 -16.67000 -15.69287 -15.62563 -15.39884 -14.81496 -14.70174 -14.24078 -13.92462 -13.78840 -13.58816 -13.33019 -13.14028 -13.07462 -12.82101 -12.57640 -12.51590 -12.33353 -12.00881 -11.71474 -11.41935 -11.24595 -10.94004 -10.62442 -10.11242 -9.40665 -9.09709 -8.88554 -7.97070 -6.31945 0.90854 1.05157 1.35847 1.39291 1.46790 1.64523 2.31098 2.37995 3.06623 3.41440 3.80986 3.98902 4.23353 4.37659 4.41893 4.44194 4.54799 4.62086 4.65461 4.78782 4.82158 4.91759 4.95063 5.06546 5.19439 5.24762 5.25996 5.48220 5.54358 5.64460 5.71682 5.94746 6.07065 6.11561 6.36177 6.50358 6.57363 6.62092 6.92065 7.19721 7.29577 7.42226 8.83260 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.016816 B = 0.005876 C = 0.004839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.639122 B = 4764.030938 C = 5785.189230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.723 5.723 3 C 0.512 3.488 4 O -0.589 6.589 5 C -0.124 4.124 6 C 0.087 3.913 7 N -0.681 5.681 8 C 0.237 3.763 9 H 0.018 0.982 10 C -0.563 4.563 11 H 0.036 0.964 12 C 0.043 3.957 13 N -0.879 5.879 14 Si 0.942 3.058 15 H -0.277 1.277 16 H -0.277 1.277 17 H -0.283 1.283 18 C -0.043 4.043 19 C -0.068 4.068 20 C -0.153 4.153 21 C -0.149 4.149 22 C -0.142 4.142 23 C -0.155 4.155 24 H 0.044 0.956 25 H 0.048 0.952 26 H 0.115 0.885 27 H 0.420 0.580 28 H 0.120 0.880 29 H 0.102 0.898 30 H -0.002 1.002 31 H 0.045 0.955 32 H 0.358 0.642 33 H 0.269 0.731 34 H 0.130 0.870 35 H 0.125 0.875 36 H 0.136 0.864 37 H 0.133 0.867 38 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.785 -8.940 -4.454 10.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.376 5.376 3 C 0.299 3.701 4 O -0.470 6.470 5 C -0.164 4.164 6 C -0.044 4.044 7 N -0.316 5.316 8 C 0.128 3.872 9 H 0.036 0.964 10 C -0.603 4.603 11 H 0.055 0.945 12 C -0.159 4.159 13 N -0.516 5.516 14 Si 0.768 3.232 15 H -0.203 1.203 16 H -0.202 1.202 17 H -0.209 1.209 18 C -0.044 4.044 19 C -0.087 4.087 20 C -0.171 4.171 21 C -0.167 4.167 22 C -0.160 4.160 23 C -0.174 4.174 24 H 0.063 0.937 25 H 0.067 0.933 26 H 0.133 0.867 27 H 0.257 0.743 28 H 0.138 0.862 29 H 0.120 0.880 30 H 0.017 0.983 31 H 0.064 0.936 32 H 0.181 0.819 33 H 0.079 0.921 34 H 0.148 0.852 35 H 0.142 0.858 36 H 0.154 0.846 37 H 0.151 0.849 38 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -4.080 -8.454 -5.037 10.653 hybrid contribution -0.138 0.718 2.142 2.264 sum -4.218 -7.736 -2.895 9.274 Atomic orbital electron populations 1.21666 0.78928 1.04265 1.01174 1.45737 1.08355 1.08489 1.75030 1.21017 0.90847 0.83687 0.74551 1.90675 1.71507 1.33404 1.51399 1.21499 0.90107 0.98738 1.06032 1.21332 0.89739 0.94975 0.98370 1.60959 1.04462 1.15288 1.50913 1.18000 0.89286 0.87424 0.92507 0.96373 1.21800 1.34488 1.08659 0.95303 0.94521 1.25426 0.93638 0.95423 1.01424 1.69696 1.31988 1.15986 1.33967 0.85821 0.77627 0.78293 0.81414 1.20302 1.20180 1.20894 1.20195 0.97772 0.93348 0.93111 1.21243 0.93124 0.99302 0.94993 1.21388 0.96630 0.99057 1.00030 1.21193 1.00196 0.93722 1.01546 1.21126 0.94024 0.99139 1.01669 1.21058 0.97388 0.97949 1.00957 0.93698 0.93311 0.86664 0.74298 0.86217 0.87956 0.98325 0.93614 0.81851 0.92078 0.85210 0.85753 0.84591 0.84898 0.87789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.47 10.70 127.77 1.37 2.84 16 2 N -0.72 -15.05 5.71 -484.53 -2.77 -17.82 16 3 C 0.51 16.01 7.83 87.65 0.69 16.69 16 4 O -0.59 -24.29 15.98 -3.03 -0.05 -24.34 16 5 C -0.12 -3.85 5.96 29.85 0.18 -3.67 16 6 C 0.09 3.68 4.77 86.30 0.41 4.10 16 7 N -0.68 -31.38 5.39 -499.36 -2.69 -34.07 16 8 C 0.24 12.07 2.50 43.42 0.11 12.18 16 9 H 0.02 0.95 7.75 -2.38 -0.02 0.93 16 10 C -0.56 -30.90 8.63 25.60 0.22 -30.68 16 11 H 0.04 2.09 7.81 -2.91 -0.02 2.07 16 12 C 0.04 2.26 5.05 84.65 0.43 2.68 16 13 N -0.88 -44.31 7.97 21.45 0.17 -44.13 16 14 Si 0.94 42.67 29.54 68.60 2.03 44.69 16 15 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 16 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 17 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 18 C -0.04 -2.08 4.79 -19.87 -0.10 -2.18 16 19 C -0.07 -3.11 7.66 22.27 0.17 -2.94 16 20 C -0.15 -6.00 10.05 22.27 0.22 -5.78 16 21 C -0.15 -5.30 10.05 22.27 0.22 -5.08 16 22 C -0.14 -5.29 10.05 22.27 0.22 -5.07 16 23 C -0.15 -6.80 9.70 22.27 0.22 -6.59 16 24 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.42 5.57 8.83 -92.71 -0.82 4.75 16 28 H 0.12 3.16 8.14 -2.39 -0.02 3.14 16 29 H 0.10 2.93 8.14 -2.39 -0.02 2.91 16 30 H 0.00 -0.08 7.96 -2.39 -0.02 -0.10 16 31 H 0.05 2.02 8.01 -2.38 -0.02 2.00 16 32 H 0.36 17.12 5.52 -89.69 -0.50 16.62 16 33 H 0.27 12.94 8.31 -92.71 -0.77 12.17 16 34 H 0.13 6.22 5.59 -2.91 -0.02 6.21 16 35 H 0.12 4.19 8.06 -2.91 -0.02 4.17 16 36 H 0.14 3.82 8.06 -2.91 -0.02 3.79 16 37 H 0.13 4.03 8.06 -2.91 -0.02 4.01 16 38 H 0.10 4.39 8.06 -2.91 -0.02 4.37 16 Total: -1.00 -65.61 316.39 0.80 -64.81 By element: Atomic # 1 Polarization: 34.59 SS G_CDS: -0.25 Total: 34.34 kcal Atomic # 6 Polarization: -27.84 SS G_CDS: 4.36 Total: -23.48 kcal Atomic # 7 Polarization: -90.73 SS G_CDS: -5.29 Total: -96.03 kcal Atomic # 8 Polarization: -24.29 SS G_CDS: -0.05 Total: -24.34 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.69 kcal Total: -65.61 0.80 -64.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055018708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.860 kcal (2) G-P(sol) polarization free energy of solvation -65.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds